Wall clock time and date at job start Mon Mar 30 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.50695 * 109.47368 * 119.99981 * 2 1 3 5 5 C 1.38310 * 119.96195 * 300.00310 * 4 2 1 6 6 C 1.38260 * 120.15265 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07369 * 359.97438 * 6 5 4 8 8 C 1.38885 * 119.92502 * 0.02562 * 7 6 5 9 9 N 1.39678 * 120.07762 * 180.02562 * 8 7 6 10 10 C 1.46498 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.47167 * 180.02562 * 10 9 8 12 12 O 1.42902 * 109.46785 * 64.99807 * 11 10 9 13 13 C 1.42904 * 113.99528 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46952 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99732 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00179 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00237 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99573 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46753 * 90.00615 * 18 16 14 20 20 H 1.48505 * 109.46979 * 210.00026 * 18 16 14 21 21 H 1.48494 * 109.47599 * 330.00383 * 18 16 14 22 22 C 1.38082 * 119.96621 * 119.99723 * 4 2 1 23 23 H 1.08999 * 109.47229 * 299.99878 * 1 2 3 24 24 H 1.09001 * 109.47171 * 60.00334 * 1 2 3 25 25 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47229 * 240.00122 * 2 1 3 27 27 H 1.08999 * 109.47074 * 60.00027 * 3 2 1 28 28 H 1.09006 * 109.46985 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46931 * 299.99814 * 3 2 1 30 30 H 1.08007 * 119.92501 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.96798 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.03668 * 180.02562 * 7 6 5 33 33 H 0.96998 * 120.00208 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47505 * 300.00116 * 10 9 8 35 35 H 1.09004 * 109.47031 * 60.00317 * 10 9 8 36 36 H 1.08992 * 109.47430 * 185.00221 * 11 10 9 37 37 H 1.09004 * 109.46544 * 305.00345 * 11 10 9 38 38 H 1.08998 * 109.47453 * 300.00053 * 13 12 11 39 39 H 1.08998 * 109.46909 * 60.00496 * 13 12 11 40 40 H 0.97001 * 120.00075 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03311 * 0.28109 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6977 -0.2372 2.4862 6 6 2.1569 -0.8856 3.6178 7 6 2.9514 -2.0090 3.4973 8 6 3.2894 -2.4869 2.2378 9 7 4.0922 -3.6230 2.1124 10 6 4.5792 -4.3116 3.3102 11 6 5.4298 -5.5143 2.8967 12 8 6.6026 -5.0580 2.2198 13 6 7.4703 -6.1083 1.7884 14 6 8.6681 -5.5160 1.0914 15 1 8.7574 -4.4447 0.9879 16 6 9.6492 -6.3418 0.5850 17 7 10.6942 -5.8249 -0.0235 18 14 9.4942 -8.1948 0.7635 19 1 8.7717 -8.7463 -0.4109 20 1 10.8482 -8.7997 0.8405 21 1 8.7394 -8.5114 2.0025 22 6 2.8261 -1.8330 1.1029 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.0770 0.6413 2.5832 31 1 1.8941 -0.5133 4.5969 32 1 3.3095 -2.5153 4.3817 33 1 4.3272 -3.9560 1.2322 34 1 5.1844 -3.6257 3.9030 35 1 3.7307 -4.6529 3.9033 36 1 5.7183 -6.0776 3.7841 37 1 4.8524 -6.1559 2.2310 38 1 7.8013 -6.6843 2.6526 39 1 6.9351 -6.7618 1.0995 40 1 11.3846 -6.4059 -0.3795 41 1 3.0907 -2.1994 0.1219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385372544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:48 Heat of formation + Delta-G solvation = -39.425693 kcal Electronic energy + Delta-G solvation = -18949.645690 eV Core-core repulsion = 16021.688436 eV Total energy + Delta-G solvation = -2927.957254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62908 -37.50215 -36.15693 -34.27075 -32.68598 -30.86640 -29.64261 -28.09639 -27.25809 -26.93798 -23.54140 -22.33745 -21.95258 -21.68174 -19.57991 -17.10841 -16.90553 -16.14569 -15.86845 -15.70019 -15.13147 -14.54917 -14.29282 -14.16502 -13.87780 -13.46583 -13.40825 -13.28678 -12.86856 -12.49142 -12.44223 -12.15936 -11.95595 -11.72257 -11.48776 -11.28350 -11.08901 -10.87877 -10.74021 -10.66172 -10.56808 -9.96757 -9.83297 -9.26263 -8.97268 -8.63302 -8.56946 -7.21109 -6.16994 -4.16915 1.54302 1.77627 3.19861 3.27230 3.27809 3.61470 3.99290 4.29798 4.48217 4.64264 4.77183 5.07815 5.10301 5.13939 5.21057 5.27408 5.34763 5.42431 5.48886 5.51201 5.61651 5.66456 5.69460 5.76821 5.81177 5.86700 5.93778 6.04462 6.12076 6.13804 6.16899 6.47263 6.49401 6.64510 6.80352 6.89969 7.01047 7.51553 7.53664 7.89655 7.94886 8.57514 8.94041 9.41455 10.95955 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027389 B = 0.003319 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.047717 B = 8434.561432 C = 9001.489308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.030 4.030 5 C -0.184 4.184 6 C -0.071 4.071 7 C -0.208 4.208 8 C 0.228 3.772 9 N -0.736 5.736 10 C 0.130 3.870 11 C 0.045 3.955 12 O -0.378 6.378 13 C 0.169 3.831 14 C -0.522 4.522 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.196 4.196 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.406 0.594 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.004 0.996 39 H -0.001 1.001 40 H 0.267 0.733 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 8.473 4.465 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.031 4.031 5 C -0.204 4.204 6 C -0.090 4.090 7 C -0.231 4.231 8 C 0.123 3.877 9 N -0.365 5.365 10 C 0.006 3.994 11 C -0.033 4.033 12 O -0.297 6.297 13 C 0.094 3.906 14 C -0.559 4.559 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.219 4.219 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.016 0.984 40 H 0.077 0.923 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.298 8.505 4.525 22.468 hybrid contribution 0.225 -1.518 -0.201 1.548 sum -20.072 6.987 4.323 21.689 Atomic orbital electron populations 1.21830 0.94499 1.01900 1.01647 1.20133 0.95775 0.96076 0.95711 1.21838 1.01469 0.95074 1.01615 1.19505 0.95245 0.93922 0.94413 1.20593 1.05655 1.02287 0.91867 1.20799 0.95750 0.94354 0.98060 1.20599 1.06173 1.00775 0.95561 1.17854 0.89413 0.86730 0.93738 1.44720 1.54353 1.28490 1.08898 1.21367 0.96079 0.93977 0.88009 1.22559 0.88654 0.95147 0.96931 1.87964 1.31942 1.34346 1.75450 1.20624 0.89409 0.87058 0.93518 1.20872 1.02452 0.96508 1.36108 0.89963 1.24772 0.94846 0.98724 0.94598 1.69870 1.10019 1.35575 1.37701 0.86843 0.77935 0.85770 0.79128 1.19915 1.20704 1.19134 1.20486 1.05201 0.99150 0.97082 0.92471 0.92655 0.92618 0.90606 0.92473 0.92394 0.92644 0.86992 0.86657 0.86459 0.75906 0.91506 0.91566 0.92705 0.93725 0.97836 0.98359 0.92282 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.01 37.16 0.33 -0.85 16 2 C -0.06 -0.57 3.09 -91.77 -0.28 -0.86 16 3 C -0.14 -1.28 9.01 37.16 0.33 -0.94 16 4 C -0.03 -0.36 4.78 -104.66 -0.50 -0.86 16 5 C -0.18 -2.11 8.71 -39.55 -0.34 -2.45 16 6 C -0.07 -0.83 10.04 -39.61 -0.40 -1.23 16 7 C -0.21 -2.72 9.31 -39.38 -0.37 -3.09 16 8 C 0.23 3.24 6.65 -83.79 -0.56 2.68 16 9 N -0.74 -10.83 5.68 -58.63 -0.33 -11.16 16 10 C 0.13 1.82 5.30 -4.04 -0.02 1.79 16 11 C 0.05 0.73 6.07 37.16 0.23 0.96 16 12 O -0.38 -8.45 10.27 -35.23 -0.36 -8.81 16 13 C 0.17 4.20 4.76 36.01 0.17 4.37 16 14 C -0.52 -15.38 9.99 -34.44 -0.34 -15.73 16 15 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -27.45 13.96 55.43 0.77 -26.67 16 18 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 22 C -0.20 -2.65 9.52 -39.38 -0.37 -3.02 16 23 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 27 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.11 1.08 7.09 -52.48 -0.37 0.71 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.40 6.73 -52.48 -0.35 1.05 16 33 H 0.41 6.16 8.49 -40.82 -0.35 5.81 16 34 H 0.07 0.98 7.95 -51.93 -0.41 0.56 16 35 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 39 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.12 1.51 7.94 -52.48 -0.42 1.09 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -31.46 336.67 -8.54 -40.00 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.81 Total: 2.30 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.22 Total: -17.19 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.83 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.36 Total: -8.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.46 -8.54 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385372544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.574 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds