Wall clock time and date at job start Mon Mar 30 2020 07:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.50695 * 109.47368 * 119.99981 * 2 1 3 5 5 C 1.38310 * 119.96195 * 300.00310 * 4 2 1 6 6 C 1.38260 * 120.15265 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07369 * 359.97438 * 6 5 4 8 8 C 1.38885 * 119.92502 * 0.02562 * 7 6 5 9 9 N 1.39678 * 120.07762 * 180.02562 * 8 7 6 10 10 C 1.46498 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.47167 * 180.02562 * 10 9 8 12 12 O 1.42902 * 109.46785 * 64.99807 * 11 10 9 13 13 C 1.42904 * 113.99528 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46952 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99732 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00179 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00237 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99573 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46753 * 90.00615 * 18 16 14 20 20 H 1.48505 * 109.46979 * 210.00026 * 18 16 14 21 21 H 1.48494 * 109.47599 * 330.00383 * 18 16 14 22 22 C 1.38082 * 119.96621 * 119.99723 * 4 2 1 23 23 H 1.08999 * 109.47229 * 299.99878 * 1 2 3 24 24 H 1.09001 * 109.47171 * 60.00334 * 1 2 3 25 25 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47229 * 240.00122 * 2 1 3 27 27 H 1.08999 * 109.47074 * 60.00027 * 3 2 1 28 28 H 1.09006 * 109.46985 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46931 * 299.99814 * 3 2 1 30 30 H 1.08007 * 119.92501 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.96798 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.03668 * 180.02562 * 7 6 5 33 33 H 0.96998 * 120.00208 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47505 * 300.00116 * 10 9 8 35 35 H 1.09004 * 109.47031 * 60.00317 * 10 9 8 36 36 H 1.08992 * 109.47430 * 185.00221 * 11 10 9 37 37 H 1.09004 * 109.46544 * 305.00345 * 11 10 9 38 38 H 1.08998 * 109.47453 * 300.00053 * 13 12 11 39 39 H 1.08998 * 109.46909 * 60.00496 * 13 12 11 40 40 H 0.97001 * 120.00075 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03311 * 0.28109 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6977 -0.2372 2.4862 6 6 2.1569 -0.8856 3.6178 7 6 2.9514 -2.0090 3.4973 8 6 3.2894 -2.4869 2.2378 9 7 4.0922 -3.6230 2.1124 10 6 4.5792 -4.3116 3.3102 11 6 5.4298 -5.5143 2.8967 12 8 6.6026 -5.0580 2.2198 13 6 7.4703 -6.1083 1.7884 14 6 8.6681 -5.5160 1.0914 15 1 8.7574 -4.4447 0.9879 16 6 9.6492 -6.3418 0.5850 17 7 10.6942 -5.8249 -0.0235 18 14 9.4942 -8.1948 0.7635 19 1 8.7717 -8.7463 -0.4109 20 1 10.8482 -8.7997 0.8405 21 1 8.7394 -8.5114 2.0025 22 6 2.8261 -1.8330 1.1029 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.0770 0.6413 2.5832 31 1 1.8941 -0.5133 4.5969 32 1 3.3095 -2.5153 4.3817 33 1 4.3272 -3.9560 1.2322 34 1 5.1844 -3.6257 3.9030 35 1 3.7307 -4.6529 3.9033 36 1 5.7183 -6.0776 3.7841 37 1 4.8524 -6.1559 2.2310 38 1 7.8013 -6.6843 2.6526 39 1 6.9351 -6.7618 1.0995 40 1 11.3846 -6.4059 -0.3795 41 1 3.0907 -2.1994 0.1219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385372544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:47 Heat of formation + Delta-G solvation = -58.716380 kcal Electronic energy + Delta-G solvation = -18950.482197 eV Core-core repulsion = 16021.688436 eV Total energy + Delta-G solvation = -2928.793761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58784 -38.97119 -37.26603 -35.33550 -34.77389 -32.02541 -30.77886 -29.78317 -28.20944 -27.93942 -24.59180 -23.99165 -23.27159 -22.78426 -20.49414 -19.12316 -17.99091 -17.54746 -17.24246 -16.87229 -16.41760 -16.18674 -15.45329 -15.15630 -15.08158 -14.67738 -14.40561 -14.30535 -14.22258 -14.15290 -13.49239 -13.23176 -13.01815 -12.81858 -12.78639 -12.60173 -12.40673 -12.14191 -12.02071 -11.85120 -11.55120 -11.43158 -11.41114 -10.96505 -10.85175 -10.42999 -9.58418 -8.40144 -8.25438 -6.48943 0.58401 0.80089 1.31720 1.35038 1.45819 2.26951 2.53163 2.92558 2.99172 3.04177 3.80446 3.98483 4.02358 4.17068 4.23415 4.36828 4.39007 4.46562 4.52603 4.56297 4.62631 4.64168 4.74174 4.80964 4.85225 4.88544 4.97677 5.02501 5.10151 5.11382 5.29214 5.37410 5.39968 5.42887 5.49140 5.71198 5.86652 5.88945 6.07754 6.50000 6.55584 6.69163 6.81036 7.15655 8.77183 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027389 B = 0.003319 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.047717 B = 8434.561432 C = 9001.489308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.034 4.034 5 C -0.185 4.185 6 C -0.073 4.073 7 C -0.221 4.221 8 C 0.207 3.793 9 N -0.747 5.747 10 C 0.137 3.863 11 C 0.039 3.961 12 O -0.406 6.406 13 C 0.180 3.820 14 C -0.548 4.548 15 H 0.026 0.974 16 C 0.011 3.989 17 N -0.943 5.943 18 Si 0.959 3.041 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.243 1.243 22 C -0.218 4.218 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.273 0.727 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.731 7.428 5.614 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C -0.197 4.197 4 C -0.035 4.035 5 C -0.205 4.205 6 C -0.091 4.091 7 C -0.243 4.243 8 C 0.103 3.897 9 N -0.376 5.376 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.326 6.326 13 C 0.104 3.896 14 C -0.586 4.586 15 H 0.045 0.955 16 C -0.187 4.187 17 N -0.582 5.582 18 Si 0.780 3.220 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.166 1.166 22 C -0.240 4.240 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.452 7.488 5.693 24.342 hybrid contribution 0.847 -1.019 -0.565 1.441 sum -21.604 6.468 5.128 23.128 Atomic orbital electron populations 1.21798 0.93063 1.01833 1.02730 1.20189 0.96916 0.96278 0.94496 1.21823 1.00513 0.94624 1.02777 1.19812 0.94552 0.93399 0.95753 1.20903 1.05367 1.02720 0.91490 1.21155 0.94832 0.93653 0.99457 1.20823 1.06656 1.01512 0.95339 1.18089 0.90036 0.86997 0.94566 1.44784 1.54946 1.29114 1.08725 1.21386 0.96568 0.92929 0.87874 1.22891 0.86821 0.96647 0.97458 1.87916 1.33797 1.34485 1.76358 1.20324 0.88343 0.87270 0.93633 1.21171 1.05368 0.94308 1.37766 0.95541 1.25889 0.93868 1.05379 0.93525 1.70037 1.11186 1.38264 1.38726 0.85565 0.78687 0.77297 0.80496 1.18406 1.19933 1.16581 1.20645 1.06300 1.00194 0.96895 0.91751 0.91211 0.93259 0.91233 0.91700 0.93876 0.91110 0.84829 0.84031 0.85585 0.76721 0.92564 0.88367 0.90669 0.92320 0.96688 0.96904 0.91759 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 2 C -0.06 -1.13 3.09 -11.54 -0.04 -1.16 16 3 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 4 C -0.03 -0.81 4.78 -19.89 -0.10 -0.90 16 5 C -0.18 -3.91 8.71 22.29 0.19 -3.72 16 6 C -0.07 -1.56 10.04 22.25 0.22 -1.34 16 7 C -0.22 -5.55 9.31 22.40 0.21 -5.34 16 8 C 0.21 5.92 6.65 38.21 0.25 6.18 16 9 N -0.75 -22.13 5.68 -339.41 -1.93 -24.06 16 10 C 0.14 3.67 5.30 86.38 0.46 4.12 16 11 C 0.04 1.20 6.07 71.98 0.44 1.64 16 12 O -0.41 -18.22 10.27 -148.98 -1.53 -19.75 16 13 C 0.18 8.82 4.76 71.24 0.34 9.16 16 14 C -0.55 -33.41 9.99 25.60 0.26 -33.15 16 15 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 16 C 0.01 0.67 5.47 84.66 0.46 1.13 16 17 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 18 Si 0.96 42.88 27.47 68.60 1.88 44.76 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 22 C -0.22 -6.00 9.52 22.40 0.21 -5.79 16 23 H 0.06 0.87 7.38 -2.39 -0.02 0.85 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 27 H 0.06 0.97 7.38 -2.39 -0.02 0.95 16 28 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.13 2.21 7.09 -2.91 -0.02 2.19 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.13 2.84 6.73 -2.91 -0.02 2.82 16 33 H 0.40 12.51 8.49 -92.71 -0.79 11.72 16 34 H 0.06 1.62 7.95 -2.39 -0.02 1.60 16 35 H 0.10 2.02 7.95 -2.38 -0.02 2.00 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.02 0.71 7.20 -2.39 -0.02 0.70 16 39 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.11 3.07 7.94 -2.91 -0.02 3.04 16 Total: -1.00 -70.41 336.67 3.09 -67.32 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.15 Total: 23.24 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.21 Total: -32.25 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.63 Total: -83.32 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.53 Total: -19.75 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -70.41 3.09 -67.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385372544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.605 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds