Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00219 * 2 1 4 4 C 1.38212 * 120.00284 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99859 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00248 * 179.70563 * 6 5 4 8 8 H 1.08996 * 109.46956 * 200.00252 * 7 6 5 9 9 C 1.52998 * 109.47165 * 79.99757 * 7 6 5 10 10 N 1.46902 * 109.46714 * 319.99822 * 7 6 5 11 11 C 1.46904 * 110.99625 * 205.00178 * 10 7 6 12 12 C 1.52997 * 109.46829 * 179.97438 * 11 10 7 13 13 O 1.42901 * 109.47273 * 64.99907 * 12 11 10 14 14 C 1.42896 * 114.00475 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47444 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00014 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47451 * 59.99318 * 19 17 15 21 21 H 1.48493 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47112 * 299.99882 * 19 17 15 23 23 C 1.38217 * 120.00041 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.46847 * 90.00471 * 1 2 3 25 25 H 1.08998 * 109.47421 * 209.99712 * 1 2 3 26 26 H 1.08993 * 109.47234 * 330.00366 * 1 2 3 27 27 H 1.08000 * 119.99755 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99776 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.00399 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46998 * 60.00137 * 9 7 6 31 31 H 1.09003 * 109.46940 * 180.02562 * 9 7 6 32 32 H 1.08992 * 109.47129 * 299.99904 * 9 7 6 33 33 H 1.00901 * 111.00054 * 328.95576 * 10 7 6 34 34 H 1.08993 * 109.46991 * 299.99865 * 11 10 7 35 35 H 1.09000 * 109.46901 * 60.00518 * 11 10 7 36 36 H 1.09000 * 109.47441 * 184.99705 * 12 11 10 37 37 H 1.08999 * 109.47675 * 304.99979 * 12 11 10 38 38 H 1.09003 * 109.47186 * 300.00293 * 14 13 12 39 39 H 1.09000 * 109.47085 * 59.99743 * 14 13 12 40 40 H 0.96992 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99701 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0095 8 1 3.6777 -3.2985 -0.3600 9 6 4.8135 -2.8228 1.4076 10 7 5.4931 -2.3929 -0.9055 11 6 5.8959 -3.7131 -1.4084 12 6 7.1025 -3.5590 -2.3364 13 8 8.2219 -3.0821 -1.5870 14 6 9.4078 -2.9032 -2.3639 15 6 10.5183 -2.4012 -1.4774 16 1 10.3366 -2.2357 -0.4257 17 6 11.7661 -2.1531 -2.0089 18 7 11.9874 -2.3550 -3.2895 19 14 13.1422 -1.5301 -0.9101 20 1 13.4013 -2.5185 0.1675 21 1 14.3743 -1.3431 -1.7177 22 1 12.7449 -0.2327 -0.3066 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 -0.0001 -0.0024 30 1 3.9535 -2.9038 2.0725 31 1 5.3589 -3.7666 1.4018 32 1 5.4700 -2.0264 1.7580 33 1 5.3031 -1.7585 -1.6668 34 1 6.1622 -4.3557 -0.5693 35 1 5.0686 -4.1597 -1.9599 36 1 7.3463 -4.5248 -2.7789 37 1 6.8645 -2.8470 -3.1267 38 1 9.6993 -3.8557 -2.8067 39 1 9.2179 -2.1779 -3.1551 40 1 12.8651 -2.1801 -3.6634 41 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385375540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -37.055082 kcal Electronic energy + Delta-G solvation = -19107.578753 eV Core-core repulsion = 16179.724296 eV Total energy + Delta-G solvation = -2927.854457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.73024 -37.28776 -35.98604 -33.00751 -32.54852 -31.82030 -29.47228 -27.87529 -27.00774 -26.37259 -23.40726 -22.24900 -22.09797 -21.31732 -19.79650 -16.77401 -16.31013 -16.00742 -15.74164 -15.34153 -14.85457 -14.59351 -14.19395 -14.07704 -13.76810 -13.53810 -13.16324 -13.06110 -12.58133 -12.44350 -12.36229 -12.04853 -11.92516 -11.56002 -11.42509 -11.21927 -11.04137 -10.79898 -10.76008 -10.55767 -10.39898 -9.94496 -9.04499 -8.86576 -8.74885 -8.63221 -8.18529 -8.07784 -6.05334 -4.06241 1.28790 1.34004 3.36331 3.38452 3.42936 3.68820 4.25159 4.40062 4.60235 4.73534 4.84598 4.94965 5.09152 5.14695 5.25669 5.31006 5.35641 5.40540 5.47234 5.58030 5.61661 5.65786 5.71173 5.81487 5.91906 6.01557 6.06794 6.07490 6.14217 6.33471 6.41260 6.45960 6.50724 6.58625 6.97532 7.16245 7.26062 7.49683 7.59397 7.86391 8.22940 8.67973 9.08391 9.58388 11.06378 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.003457 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.388690 B = 8097.069702 C = 8552.399252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.083 4.083 7 C 0.124 3.876 8 H 0.046 0.954 9 C -0.134 4.134 10 N -0.669 5.669 11 C 0.065 3.935 12 C 0.065 3.935 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.117 4.117 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.263 0.737 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.309 2.748 5.543 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.083 4.083 7 C 0.015 3.985 8 H 0.063 0.937 9 C -0.192 4.192 10 N -0.301 5.301 11 C -0.064 4.064 12 C -0.013 4.013 13 O -0.299 6.299 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.136 4.136 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.700 2.783 6.112 22.716 hybrid contribution 0.137 0.096 -0.596 0.619 sum -21.563 2.879 5.516 22.443 Atomic orbital electron populations 1.20764 0.91442 1.02545 1.02138 1.19838 0.95829 0.93177 1.00495 1.21017 0.94397 0.97281 1.01613 1.21205 0.94146 0.98302 0.99886 1.21212 1.01140 0.91377 0.98292 1.19990 0.93271 0.95200 0.99871 1.20442 0.90109 0.92701 0.95276 0.93661 1.21765 1.00647 1.02544 0.94216 1.60466 1.35629 1.11169 1.22821 1.22036 0.95159 0.90750 0.98452 1.22221 0.88203 0.97395 0.93457 1.87953 1.19419 1.86301 1.36230 1.20172 0.81281 0.94965 0.91625 1.21033 0.93989 1.43726 0.96112 0.91557 1.24951 0.98616 0.95737 0.95297 1.69959 1.23143 1.49180 1.11781 0.86401 0.80501 0.79471 0.80123 1.20051 1.21245 1.20006 1.20882 0.93477 0.97442 1.01753 0.91381 0.91727 0.91708 0.86455 0.86002 0.84598 0.93046 0.92211 0.91540 0.84001 0.90287 0.94902 0.94223 0.94832 0.98056 0.97934 0.92700 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.32 10.05 -39.59 -0.40 -1.71 16 5 C -0.10 -1.29 9.00 -39.58 -0.36 -1.65 16 6 C -0.08 -1.01 4.71 -104.62 -0.49 -1.50 16 7 C 0.12 1.56 2.82 -68.86 -0.19 1.36 16 8 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 9 C -0.13 -1.68 9.39 37.16 0.35 -1.33 16 10 N -0.67 -9.98 5.65 -107.95 -0.61 -10.59 16 11 C 0.06 0.98 5.87 -3.82 -0.02 0.96 16 12 C 0.07 1.23 6.22 37.16 0.23 1.46 16 13 O -0.38 -9.37 10.27 -35.23 -0.36 -9.73 16 14 C 0.19 5.45 5.69 36.01 0.20 5.65 16 15 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 19 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.12 -1.27 9.32 -39.58 -0.37 -1.63 16 24 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.88 7.72 -52.49 -0.41 1.47 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.34 4.99 7.99 -39.29 -0.31 4.68 16 34 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 35 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -32.01 343.38 -9.11 -41.12 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.92 Total: -0.27 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.11 Total: -16.24 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.13 Total: -37.29 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.01 -9.11 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385375540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.067 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds