Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00219 * 2 1 4 4 C 1.38212 * 120.00284 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99859 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00248 * 179.70563 * 6 5 4 8 8 H 1.08996 * 109.46956 * 200.00252 * 7 6 5 9 9 C 1.52998 * 109.47165 * 79.99757 * 7 6 5 10 10 N 1.46902 * 109.46714 * 319.99822 * 7 6 5 11 11 C 1.46904 * 110.99625 * 205.00178 * 10 7 6 12 12 C 1.52997 * 109.46829 * 179.97438 * 11 10 7 13 13 O 1.42901 * 109.47273 * 64.99907 * 12 11 10 14 14 C 1.42896 * 114.00475 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47444 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00014 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47451 * 59.99318 * 19 17 15 21 21 H 1.48493 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47112 * 299.99882 * 19 17 15 23 23 C 1.38217 * 120.00041 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.46847 * 90.00471 * 1 2 3 25 25 H 1.08998 * 109.47421 * 209.99712 * 1 2 3 26 26 H 1.08993 * 109.47234 * 330.00366 * 1 2 3 27 27 H 1.08000 * 119.99755 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99776 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.00399 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46998 * 60.00137 * 9 7 6 31 31 H 1.09003 * 109.46940 * 180.02562 * 9 7 6 32 32 H 1.08992 * 109.47129 * 299.99904 * 9 7 6 33 33 H 1.00901 * 111.00054 * 328.95576 * 10 7 6 34 34 H 1.08993 * 109.46991 * 299.99865 * 11 10 7 35 35 H 1.09000 * 109.46901 * 60.00518 * 11 10 7 36 36 H 1.09000 * 109.47441 * 184.99705 * 12 11 10 37 37 H 1.08999 * 109.47675 * 304.99979 * 12 11 10 38 38 H 1.09003 * 109.47186 * 300.00293 * 14 13 12 39 39 H 1.09000 * 109.47085 * 59.99743 * 14 13 12 40 40 H 0.96992 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99701 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0095 8 1 3.6777 -3.2985 -0.3600 9 6 4.8135 -2.8228 1.4076 10 7 5.4931 -2.3929 -0.9055 11 6 5.8959 -3.7131 -1.4084 12 6 7.1025 -3.5590 -2.3364 13 8 8.2219 -3.0821 -1.5870 14 6 9.4078 -2.9032 -2.3639 15 6 10.5183 -2.4012 -1.4774 16 1 10.3366 -2.2357 -0.4257 17 6 11.7661 -2.1531 -2.0089 18 7 11.9874 -2.3550 -3.2895 19 14 13.1422 -1.5301 -0.9101 20 1 13.4013 -2.5185 0.1675 21 1 14.3743 -1.3431 -1.7177 22 1 12.7449 -0.2327 -0.3066 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 -0.0001 -0.0024 30 1 3.9535 -2.9038 2.0725 31 1 5.3589 -3.7666 1.4018 32 1 5.4700 -2.0264 1.7580 33 1 5.3031 -1.7585 -1.6668 34 1 6.1622 -4.3557 -0.5693 35 1 5.0686 -4.1597 -1.9599 36 1 7.3463 -4.5248 -2.7789 37 1 6.8645 -2.8470 -3.1267 38 1 9.6993 -3.8557 -2.8067 39 1 9.2179 -2.1779 -3.1551 40 1 12.8651 -2.1801 -3.6634 41 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385375540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -56.573732 kcal Electronic energy + Delta-G solvation = -19108.425145 eV Core-core repulsion = 16179.724296 eV Total energy + Delta-G solvation = -2928.700849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59987 -38.82438 -37.37917 -34.95860 -33.70813 -32.87656 -30.55605 -29.55516 -28.22310 -27.61159 -24.57635 -24.31408 -22.97570 -22.60226 -20.71317 -18.64090 -17.70306 -17.41864 -17.05617 -16.62052 -16.28004 -16.17504 -15.43203 -15.13610 -15.04385 -14.65834 -14.41190 -13.99676 -13.93644 -13.70234 -13.41295 -13.14364 -12.99401 -12.88720 -12.81119 -12.69475 -12.53704 -12.36761 -12.21347 -11.90297 -11.73859 -11.51291 -11.26549 -10.85092 -10.18390 -9.70704 -9.47064 -9.29035 -8.31334 -6.43314 0.43810 0.49952 1.39516 1.44679 1.53040 2.35516 2.83344 3.02136 3.15252 3.27182 3.69826 3.99518 4.06316 4.18826 4.23485 4.32376 4.34594 4.48781 4.54511 4.57397 4.63499 4.67311 4.76044 4.81029 4.86305 4.89975 4.97367 4.99971 5.04118 5.18491 5.20049 5.32640 5.37639 5.55977 5.60906 5.66477 5.70553 5.98251 6.12921 6.19781 6.44208 6.58424 6.87144 7.28882 8.80933 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.003457 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.388690 B = 8097.069702 C = 8552.399252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.091 4.091 7 C 0.129 3.871 8 H 0.063 0.937 9 C -0.131 4.131 10 N -0.689 5.689 11 C 0.075 3.925 12 C 0.055 3.945 13 O -0.395 6.395 14 C 0.209 3.791 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.266 1.266 23 C -0.122 4.122 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.340 0.660 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.037 0.963 38 H -0.016 1.016 39 H -0.018 1.018 40 H 0.271 0.729 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.788 3.008 6.335 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.092 4.092 7 C 0.020 3.980 8 H 0.081 0.919 9 C -0.189 4.189 10 N -0.322 5.322 11 C -0.054 4.054 12 C -0.022 4.022 13 O -0.315 6.315 14 C 0.134 3.866 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.140 4.140 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.079 0.921 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.207 3.033 6.903 24.401 hybrid contribution 0.490 0.014 -0.884 1.011 sum -22.718 3.047 6.019 23.698 Atomic orbital electron populations 1.20818 0.89214 1.03671 1.03018 1.20231 0.97502 0.92751 0.99024 1.21322 0.93969 0.98553 1.00837 1.21383 0.95011 0.98171 0.99893 1.21127 1.00201 0.92596 1.00251 1.19978 0.93984 0.94554 1.00660 1.20441 0.89506 0.93630 0.94465 0.91934 1.21742 1.00964 1.01320 0.94847 1.60421 1.37459 1.11049 1.23232 1.21938 0.94360 0.91136 0.97917 1.22586 0.87618 0.97602 0.94389 1.87911 1.19841 1.86766 1.36966 1.19783 0.82572 0.93222 0.91023 1.21358 0.95517 1.45357 0.96168 0.92221 1.25967 1.01191 0.95193 0.96933 1.70066 1.24231 1.49252 1.13570 0.85242 0.76897 0.79131 0.78193 1.18984 1.19855 1.19098 1.21112 0.92861 0.98693 1.01383 0.90489 0.90736 0.90544 0.84240 0.85115 0.86913 0.91079 0.92778 0.93681 0.84078 0.90700 0.91409 0.93324 0.94485 0.99861 1.00021 0.92057 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 4 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 5 C -0.12 -3.19 9.00 22.27 0.20 -2.99 16 6 C -0.09 -2.16 4.71 -19.86 -0.09 -2.25 16 7 C 0.13 3.12 2.82 44.17 0.12 3.24 16 8 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 9 C -0.13 -3.23 9.39 71.98 0.68 -2.56 16 10 N -0.69 -20.60 5.65 -495.45 -2.80 -23.40 16 11 C 0.08 2.22 5.87 86.30 0.51 2.73 16 12 C 0.06 2.10 6.22 71.98 0.45 2.55 16 13 O -0.40 -20.10 10.27 -148.98 -1.53 -21.63 16 14 C 0.21 12.20 5.69 71.24 0.41 12.60 16 15 C -0.55 -33.70 9.43 25.60 0.24 -33.46 16 16 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 17 C 0.01 0.32 5.46 84.65 0.46 0.78 16 18 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 19 Si 0.98 45.55 29.54 68.60 2.03 47.57 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 C -0.12 -2.40 9.32 22.27 0.21 -2.20 16 24 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 26 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 27 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 28 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.11 3.37 7.72 -2.91 -0.02 3.34 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.37 7.45 -2.39 -0.02 1.35 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.34 10.11 7.99 -89.69 -0.72 9.39 16 34 H 0.07 2.28 7.43 -2.39 -0.02 2.26 16 35 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.14 2.10 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -69.55 343.38 2.47 -67.08 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.27 Total: 16.11 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.21 Total: -28.71 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.51 Total: -80.42 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.53 Total: -21.63 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.55 2.47 -67.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385375540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds