Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46970 * 2 1 4 4 C 1.38233 * 120.00019 * 90.00580 * 3 2 1 5 5 C 1.38231 * 120.00191 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99606 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99465 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46656 * 90.00471 * 7 6 5 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 O 1.42906 * 109.47024 * 64.99964 * 10 9 8 12 12 C 1.42895 * 114.00010 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47575 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99318 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00352 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99888 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46979 * 89.99992 * 17 15 13 19 19 H 1.48499 * 109.47216 * 209.99873 * 17 15 13 20 20 H 1.48495 * 109.47544 * 330.00102 * 17 15 13 21 21 C 1.38225 * 120.00133 * 0.26011 * 6 5 4 22 22 C 1.38235 * 120.00171 * 359.48495 * 21 6 5 23 23 H 1.08998 * 109.47145 * 59.99281 * 1 2 3 24 24 H 1.08991 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46770 * 299.99950 * 1 2 3 26 26 H 1.08999 * 109.47026 * 240.00505 * 2 1 3 27 27 H 1.08995 * 109.47405 * 120.00272 * 2 1 3 28 28 H 1.08005 * 119.99907 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.00082 * 180.02562 * 5 4 3 30 30 H 1.08990 * 109.47142 * 330.00456 * 7 6 5 31 31 H 1.09004 * 109.46726 * 210.00353 * 7 6 5 32 32 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 33 33 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 34 34 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 35 35 H 1.08999 * 109.47322 * 185.00065 * 10 9 8 36 36 H 1.09001 * 109.47293 * 305.00104 * 10 9 8 37 37 H 1.09005 * 109.47322 * 300.00292 * 12 11 10 38 38 H 1.09002 * 109.47410 * 59.99743 * 12 11 10 39 39 H 0.96994 * 119.99762 * 180.02562 * 16 15 13 40 40 H 1.08008 * 119.99963 * 179.72915 * 21 6 5 41 41 H 1.08001 * 120.00577 * 180.25037 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4482 0.0000 8 7 4.9256 5.4481 -0.0002 9 6 5.4521 6.8196 -0.0007 10 6 6.9815 6.7788 -0.0003 11 8 7.4428 6.1962 -1.2210 12 6 8.8655 6.1110 -1.3231 13 6 9.2380 5.4854 -2.6426 14 1 8.4654 5.1835 -3.3342 15 6 10.5650 5.2994 -2.9672 16 7 10.8900 4.7539 -4.1190 17 14 11.9013 5.8237 -1.7719 18 1 12.2227 4.6945 -0.8625 19 1 13.1186 6.2113 -2.5291 20 1 11.4251 6.9818 -0.9738 21 6 2.7182 3.3777 -1.1971 22 6 2.2620 2.0728 -1.1972 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0825 1.5634 2.1325 29 1 2.9045 3.8845 2.1325 30 1 3.0934 5.9618 0.8900 31 1 3.0931 5.9620 -0.8899 32 1 5.2873 4.9219 0.7810 33 1 5.1024 7.3426 -0.8909 34 1 5.1027 7.3432 0.8891 35 1 7.3720 7.7925 0.0889 36 1 7.3288 6.1802 0.8419 37 1 9.2948 7.1111 -1.2616 38 1 9.2523 5.4990 -0.5083 39 1 11.8235 4.6228 -4.3472 40 1 2.8939 3.8884 -2.1325 41 1 2.0813 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385406007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -35.767162 kcal Electronic energy + Delta-G solvation = -18730.363818 eV Core-core repulsion = 15802.565209 eV Total energy + Delta-G solvation = -2927.798609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58621 -37.31263 -35.86961 -34.02014 -32.55733 -30.92462 -30.69024 -28.61788 -27.19055 -24.97355 -22.77851 -22.66268 -21.81359 -21.57825 -20.50720 -16.91986 -16.39294 -16.01690 -15.58288 -15.44307 -15.35948 -14.69209 -14.21605 -14.02436 -13.95299 -13.69140 -13.45289 -13.26322 -12.88484 -12.61117 -12.27012 -12.09322 -11.94314 -11.73856 -11.41869 -11.33356 -10.92435 -10.90948 -10.84418 -10.68382 -10.41396 -9.81994 -9.11394 -8.90453 -8.79135 -8.61090 -8.39590 -8.17391 -6.06175 -4.04326 1.29598 1.42626 3.27806 3.34345 3.35972 3.68060 4.39769 4.44299 4.60566 4.69059 4.70717 4.91809 4.94951 4.99773 5.15661 5.25000 5.25614 5.35346 5.45024 5.46524 5.51020 5.61235 5.67774 5.68209 5.79726 5.87664 5.92909 5.94832 6.06285 6.08820 6.20678 6.40032 6.59142 6.65311 6.65641 6.99580 7.05531 7.14504 7.52344 7.66071 8.11076 8.74571 9.07380 9.53605 11.07104 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.003346 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.575591 B = 8366.702207 C = 9120.763223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.083 4.083 7 C 0.099 3.901 8 N -0.671 5.671 9 C 0.065 3.935 10 C 0.061 3.939 11 O -0.364 6.364 12 C 0.167 3.833 13 C -0.514 4.514 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.090 4.090 22 C -0.118 4.118 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.340 0.660 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.000 1.000 38 H -0.004 1.004 39 H 0.266 0.734 40 H 0.125 0.875 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.113 -3.638 12.531 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.139 4.139 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.030 4.030 8 N -0.302 5.302 9 C -0.064 4.064 10 C -0.018 4.018 11 O -0.283 6.283 12 C 0.092 3.908 13 C -0.552 4.552 14 H 0.101 0.899 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.108 4.108 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.018 -3.806 11.576 23.435 hybrid contribution 0.945 0.601 1.715 2.048 sum -19.073 -3.205 13.291 23.467 Atomic orbital electron populations 1.21742 0.94885 1.01529 1.02141 1.20540 0.96009 0.92886 1.02852 1.19872 0.99353 0.96075 0.93293 1.20918 1.00807 0.94854 0.97357 1.20989 0.99885 0.94953 0.97359 1.19778 0.99199 0.96133 0.93225 1.20883 0.88672 0.92518 1.00903 1.60337 1.05328 1.14112 1.50445 1.21986 0.94421 0.89486 1.00497 1.22316 0.93192 0.96719 0.89527 1.88025 1.23722 1.81686 1.34883 1.20589 0.77722 0.94889 0.97618 1.20906 0.93440 1.39757 1.01121 0.89901 1.24774 0.98128 0.94860 0.95313 1.69880 1.17999 1.43921 1.21767 0.86849 0.81808 0.79563 0.81498 1.19991 1.20844 1.19186 1.21079 0.97235 0.94527 0.97971 1.21041 1.00178 0.94932 0.97481 0.92546 0.92533 0.92695 0.90989 0.91179 0.86465 0.86560 0.94981 0.90185 0.84175 0.90136 0.94735 0.93985 0.94658 0.98242 0.98602 0.92448 0.85666 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.09 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.29 9.70 -39.59 -0.38 -1.68 16 5 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 6 C -0.08 -1.03 5.39 -104.62 -0.56 -1.59 16 7 C 0.10 1.20 5.81 -4.97 -0.03 1.17 16 8 N -0.67 -9.96 6.44 -115.05 -0.74 -10.70 16 9 C 0.07 0.94 6.07 -3.82 -0.02 0.92 16 10 C 0.06 1.08 6.22 37.16 0.23 1.31 16 11 O -0.36 -8.78 10.27 -35.23 -0.36 -9.14 16 12 C 0.17 4.38 4.76 36.01 0.17 4.56 16 13 C -0.51 -15.75 9.99 -34.44 -0.34 -16.09 16 14 H 0.08 2.79 8.06 -52.49 -0.42 2.36 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 17 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C -0.09 -1.15 9.70 -39.59 -0.38 -1.53 16 22 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.34 4.82 8.72 -39.29 -0.34 4.48 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 38 H 0.00 -0.09 7.57 -51.93 -0.39 -0.49 16 39 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -33.31 343.93 -9.38 -42.69 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.03 Total: -0.36 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.53 Total: -17.37 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.03 Total: -38.18 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.36 Total: -9.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.31 -9.38 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds