Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46970 * 2 1 4 4 C 1.38233 * 120.00019 * 90.00580 * 3 2 1 5 5 C 1.38231 * 120.00191 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99606 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99465 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46656 * 90.00471 * 7 6 5 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 O 1.42906 * 109.47024 * 64.99964 * 10 9 8 12 12 C 1.42895 * 114.00010 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47575 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99318 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00352 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99888 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46979 * 89.99992 * 17 15 13 19 19 H 1.48499 * 109.47216 * 209.99873 * 17 15 13 20 20 H 1.48495 * 109.47544 * 330.00102 * 17 15 13 21 21 C 1.38225 * 120.00133 * 0.26011 * 6 5 4 22 22 C 1.38235 * 120.00171 * 359.48495 * 21 6 5 23 23 H 1.08998 * 109.47145 * 59.99281 * 1 2 3 24 24 H 1.08991 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46770 * 299.99950 * 1 2 3 26 26 H 1.08999 * 109.47026 * 240.00505 * 2 1 3 27 27 H 1.08995 * 109.47405 * 120.00272 * 2 1 3 28 28 H 1.08005 * 119.99907 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.00082 * 180.02562 * 5 4 3 30 30 H 1.08990 * 109.47142 * 330.00456 * 7 6 5 31 31 H 1.09004 * 109.46726 * 210.00353 * 7 6 5 32 32 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 33 33 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 34 34 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 35 35 H 1.08999 * 109.47322 * 185.00065 * 10 9 8 36 36 H 1.09001 * 109.47293 * 305.00104 * 10 9 8 37 37 H 1.09005 * 109.47322 * 300.00292 * 12 11 10 38 38 H 1.09002 * 109.47410 * 59.99743 * 12 11 10 39 39 H 0.96994 * 119.99762 * 180.02562 * 16 15 13 40 40 H 1.08008 * 119.99963 * 179.72915 * 21 6 5 41 41 H 1.08001 * 120.00577 * 180.25037 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4482 0.0000 8 7 4.9256 5.4481 -0.0002 9 6 5.4521 6.8196 -0.0007 10 6 6.9815 6.7788 -0.0003 11 8 7.4428 6.1962 -1.2210 12 6 8.8655 6.1110 -1.3231 13 6 9.2380 5.4854 -2.6426 14 1 8.4654 5.1835 -3.3342 15 6 10.5650 5.2994 -2.9672 16 7 10.8900 4.7539 -4.1190 17 14 11.9013 5.8237 -1.7719 18 1 12.2227 4.6945 -0.8625 19 1 13.1186 6.2113 -2.5291 20 1 11.4251 6.9818 -0.9738 21 6 2.7182 3.3777 -1.1971 22 6 2.2620 2.0728 -1.1972 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0825 1.5634 2.1325 29 1 2.9045 3.8845 2.1325 30 1 3.0934 5.9618 0.8900 31 1 3.0931 5.9620 -0.8899 32 1 5.2873 4.9219 0.7810 33 1 5.1024 7.3426 -0.8909 34 1 5.1027 7.3432 0.8891 35 1 7.3720 7.7925 0.0889 36 1 7.3288 6.1802 0.8419 37 1 9.2948 7.1111 -1.2616 38 1 9.2523 5.4990 -0.5083 39 1 11.8235 4.6228 -4.3472 40 1 2.8939 3.8884 -2.1325 41 1 2.0813 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385406007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -57.576646 kcal Electronic energy + Delta-G solvation = -18731.309548 eV Core-core repulsion = 15802.565209 eV Total energy + Delta-G solvation = -2928.744339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45110 -38.86043 -37.08501 -35.06288 -34.64608 -31.80198 -31.77096 -30.22861 -28.72044 -25.93319 -23.95570 -23.62786 -23.48631 -22.85774 -21.35374 -19.06937 -17.63637 -17.30457 -16.84176 -16.70971 -16.41953 -16.12032 -15.63839 -15.32694 -14.88459 -14.68786 -14.50832 -14.42733 -14.16471 -13.98791 -13.62812 -13.29407 -13.12595 -12.81317 -12.74029 -12.50501 -12.38868 -12.05659 -12.02465 -11.80870 -11.64388 -11.59590 -11.31159 -10.91845 -10.30192 -9.79370 -9.50698 -9.20091 -8.36586 -6.44319 0.41477 0.53579 1.32688 1.36589 1.47442 2.29919 2.77955 2.95720 3.13475 3.44176 3.83485 3.90373 4.02568 4.14954 4.17883 4.26978 4.29937 4.48724 4.51667 4.54722 4.58658 4.60452 4.67273 4.68191 4.76050 4.80898 4.95372 5.04989 5.06868 5.09369 5.18380 5.24209 5.38764 5.45519 5.53084 5.74373 5.74981 5.94818 6.08217 6.17601 6.47353 6.60298 6.82599 7.20458 8.81028 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.003346 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.575591 B = 8366.702207 C = 9120.763223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.098 4.098 7 C 0.105 3.895 8 N -0.697 5.697 9 C 0.072 3.928 10 C 0.050 3.950 11 O -0.396 6.396 12 C 0.179 3.821 13 C -0.544 4.544 14 H 0.026 0.974 15 C 0.010 3.990 16 N -0.944 5.944 17 Si 0.959 3.041 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.244 1.244 21 C -0.114 4.114 22 C -0.133 4.133 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.343 0.657 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.273 0.727 40 H 0.114 0.886 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -3.200 15.675 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.023 4.023 8 N -0.330 5.330 9 C -0.057 4.057 10 C -0.027 4.027 11 O -0.315 6.315 12 C 0.103 3.897 13 C -0.582 4.582 14 H 0.044 0.956 15 C -0.188 4.188 16 N -0.584 5.584 17 Si 0.780 3.220 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.132 4.132 22 C -0.151 4.151 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.848 -3.362 14.726 24.942 hybrid contribution 0.761 0.407 0.673 1.094 sum -19.088 -2.955 15.399 24.702 Atomic orbital electron populations 1.21717 0.93898 1.02423 1.01923 1.20593 0.96800 0.91425 1.03431 1.20197 0.98654 0.97196 0.93013 1.21261 1.00053 0.94832 0.98236 1.21250 0.99259 0.95281 0.97609 1.19896 0.99890 0.96480 0.93574 1.20844 0.87170 0.92686 1.01622 1.60286 1.07033 1.14553 1.51124 1.21937 0.92178 0.89763 1.01804 1.22718 0.95279 0.97395 0.87325 1.87979 1.22340 1.82703 1.38503 1.20288 0.79357 0.94911 0.95148 1.21184 0.92988 1.41309 1.02728 0.95577 1.25897 1.01059 0.94236 0.97580 1.70045 1.19230 1.44880 1.24230 0.85555 0.77514 0.80175 0.78740 1.18435 1.19750 1.16773 1.21182 0.98620 0.95375 0.98052 1.21232 1.00528 0.94771 0.98540 0.93157 0.91087 0.92529 0.90952 0.90074 0.84136 0.84511 0.92594 0.90903 0.83877 0.91218 0.90761 0.92229 0.93325 0.97086 0.97442 0.91816 0.86821 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.09 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 5 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 6 C -0.10 -2.41 5.39 -19.86 -0.11 -2.52 16 7 C 0.10 2.47 5.81 85.56 0.50 2.97 16 8 N -0.70 -20.16 6.44 -517.91 -3.33 -23.49 16 9 C 0.07 1.96 6.07 86.30 0.52 2.48 16 10 C 0.05 1.68 6.22 71.98 0.45 2.13 16 11 O -0.40 -19.12 10.27 -148.98 -1.53 -20.65 16 12 C 0.18 9.28 4.76 71.24 0.34 9.62 16 13 C -0.54 -34.42 9.99 25.60 0.26 -34.16 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.01 0.60 5.47 84.65 0.46 1.06 16 16 N -0.94 -60.96 13.96 21.45 0.30 -60.66 16 17 Si 0.96 44.29 27.47 68.60 1.88 46.18 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 21 C -0.11 -3.03 9.70 22.27 0.22 -2.82 16 22 C -0.13 -3.17 9.70 22.27 0.22 -2.96 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 28 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 31 H 0.07 1.78 8.08 -2.38 -0.02 1.76 16 32 H 0.34 9.30 8.72 -89.70 -0.78 8.52 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.01 0.56 7.20 -2.38 -0.02 0.55 16 38 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 39 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.45 343.93 1.54 -72.91 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.15 Total: 18.64 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.07 Total: -32.92 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.04 Total: -84.16 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.53 Total: -20.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -74.45 1.54 -72.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.334 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds