Wall clock time and date at job start Mon Mar 30 2020 06:57:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50707 * 109.46970 * 2 1
4 4 C 1.38233 * 120.00019 * 90.00580 * 3 2 1
5 5 C 1.38231 * 120.00191 * 179.97438 * 4 3 2
6 6 C 1.38240 * 119.99606 * 0.02562 * 5 4 3
7 7 C 1.50707 * 119.99465 * 179.97438 * 6 5 4
8 8 N 1.46902 * 109.46656 * 90.00471 * 7 6 5
9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6
10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7
11 11 O 1.42906 * 109.47024 * 64.99964 * 10 9 8
12 12 C 1.42895 * 114.00010 * 179.97438 * 11 10 9
13 13 C 1.50702 * 109.47575 * 180.02562 * 12 11 10
14 14 H 1.08002 * 119.99318 * 0.02562 * 13 12 11
15 15 C 1.37875 * 120.00352 * 179.97438 * 13 12 11
16 16 N 1.31516 * 119.99888 * 180.02562 * 15 13 12
17 17 Si 1.86798 * 119.99912 * 359.97438 * 15 13 12
18 18 H 1.48498 * 109.46979 * 89.99992 * 17 15 13
19 19 H 1.48499 * 109.47216 * 209.99873 * 17 15 13
20 20 H 1.48495 * 109.47544 * 330.00102 * 17 15 13
21 21 C 1.38225 * 120.00133 * 0.26011 * 6 5 4
22 22 C 1.38235 * 120.00171 * 359.48495 * 21 6 5
23 23 H 1.08998 * 109.47145 * 59.99281 * 1 2 3
24 24 H 1.08991 * 109.47267 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.46770 * 299.99950 * 1 2 3
26 26 H 1.08999 * 109.47026 * 240.00505 * 2 1 3
27 27 H 1.08995 * 109.47405 * 120.00272 * 2 1 3
28 28 H 1.08005 * 119.99907 * 359.97438 * 4 3 2
29 29 H 1.07996 * 120.00082 * 180.02562 * 5 4 3
30 30 H 1.08990 * 109.47142 * 330.00456 * 7 6 5
31 31 H 1.09004 * 109.46726 * 210.00353 * 7 6 5
32 32 H 1.00896 * 111.00219 * 303.95295 * 8 7 6
33 33 H 1.09002 * 109.46991 * 299.99841 * 9 8 7
34 34 H 1.09000 * 109.47202 * 60.00133 * 9 8 7
35 35 H 1.08999 * 109.47322 * 185.00065 * 10 9 8
36 36 H 1.09001 * 109.47293 * 305.00104 * 10 9 8
37 37 H 1.09005 * 109.47322 * 300.00292 * 12 11 10
38 38 H 1.09002 * 109.47410 * 59.99743 * 12 11 10
39 39 H 0.96994 * 119.99762 * 180.02562 * 16 15 13
40 40 H 1.08008 * 119.99963 * 179.72915 * 21 6 5
41 41 H 1.08001 * 120.00577 * 180.25037 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.2628 2.0725 1.1971
5 6 2.7240 3.3756 1.1972
6 6 2.9543 4.0273 -0.0001
7 6 3.4566 5.4482 0.0000
8 7 4.9256 5.4481 -0.0002
9 6 5.4521 6.8196 -0.0007
10 6 6.9815 6.7788 -0.0003
11 8 7.4428 6.1962 -1.2210
12 6 8.8655 6.1110 -1.3231
13 6 9.2380 5.4854 -2.6426
14 1 8.4654 5.1835 -3.3342
15 6 10.5650 5.2994 -2.9672
16 7 10.8900 4.7539 -4.1190
17 14 11.9013 5.8237 -1.7719
18 1 12.2227 4.6945 -0.8625
19 1 13.1186 6.2113 -2.5291
20 1 11.4251 6.9818 -0.9738
21 6 2.7182 3.3777 -1.1971
22 6 2.2620 2.0728 -1.1972
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 2.0825 1.5634 2.1325
29 1 2.9045 3.8845 2.1325
30 1 3.0934 5.9618 0.8900
31 1 3.0931 5.9620 -0.8899
32 1 5.2873 4.9219 0.7810
33 1 5.1024 7.3426 -0.8909
34 1 5.1027 7.3432 0.8891
35 1 7.3720 7.7925 0.0889
36 1 7.3288 6.1802 0.8419
37 1 9.2948 7.1111 -1.2616
38 1 9.2523 5.4990 -0.5083
39 1 11.8235 4.6228 -4.3472
40 1 2.8939 3.8884 -2.1325
41 1 2.0813 1.5638 -2.1324
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385406007.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:57:29
Heat of formation + Delta-G solvation = -57.576646 kcal
Electronic energy + Delta-G solvation = -18731.309548 eV
Core-core repulsion = 15802.565209 eV
Total energy + Delta-G solvation = -2928.744339 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 263.163 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.45110 -38.86043 -37.08501 -35.06288 -34.64608 -31.80198 -31.77096 -30.22861
-28.72044 -25.93319 -23.95570 -23.62786 -23.48631 -22.85774 -21.35374 -19.06937
-17.63637 -17.30457 -16.84176 -16.70971 -16.41953 -16.12032 -15.63839 -15.32694
-14.88459 -14.68786 -14.50832 -14.42733 -14.16471 -13.98791 -13.62812 -13.29407
-13.12595 -12.81317 -12.74029 -12.50501 -12.38868 -12.05659 -12.02465 -11.80870
-11.64388 -11.59590 -11.31159 -10.91845 -10.30192 -9.79370 -9.50698 -9.20091
-8.36586 -6.44319 0.41477 0.53579 1.32688 1.36589 1.47442 2.29919
2.77955 2.95720 3.13475 3.44176 3.83485 3.90373 4.02568 4.14954
4.17883 4.26978 4.29937 4.48724 4.51667 4.54722 4.58658 4.60452
4.67273 4.68191 4.76050 4.80898 4.95372 5.04989 5.06868 5.09369
5.18380 5.24209 5.38764 5.45519 5.53084 5.74373 5.74981 5.94818
6.08217 6.17601 6.47353 6.60298 6.82599 7.20458 8.81028
Molecular weight = 263.16amu
Principal moments of inertia in cm(-1)
A = 0.022277 B = 0.003346 C = 0.003069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1256.575591 B = 8366.702207 C = 9120.763223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.085 4.085
3 C -0.090 4.090
4 C -0.126 4.126
5 C -0.116 4.116
6 C -0.098 4.098
7 C 0.105 3.895
8 N -0.697 5.697
9 C 0.072 3.928
10 C 0.050 3.950
11 O -0.396 6.396
12 C 0.179 3.821
13 C -0.544 4.544
14 H 0.026 0.974
15 C 0.010 3.990
16 N -0.944 5.944
17 Si 0.959 3.041
18 H -0.260 1.260
19 H -0.273 1.273
20 H -0.244 1.244
21 C -0.114 4.114
22 C -0.133 4.133
23 H 0.049 0.951
24 H 0.070 0.930
25 H 0.056 0.944
26 H 0.072 0.928
27 H 0.081 0.919
28 H 0.141 0.859
29 H 0.137 0.863
30 H 0.056 0.944
31 H 0.073 0.927
32 H 0.343 0.657
33 H 0.069 0.931
34 H 0.075 0.925
35 H 0.060 0.940
36 H 0.049 0.951
37 H 0.011 0.989
38 H 0.008 0.992
39 H 0.273 0.727
40 H 0.114 0.886
41 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.907 -3.200 15.675 25.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.122 4.122
3 C -0.091 4.091
4 C -0.144 4.144
5 C -0.134 4.134
6 C -0.098 4.098
7 C -0.023 4.023
8 N -0.330 5.330
9 C -0.057 4.057
10 C -0.027 4.027
11 O -0.315 6.315
12 C 0.103 3.897
13 C -0.582 4.582
14 H 0.044 0.956
15 C -0.188 4.188
16 N -0.584 5.584
17 Si 0.780 3.220
18 H -0.184 1.184
19 H -0.197 1.197
20 H -0.168 1.168
21 C -0.132 4.132
22 C -0.151 4.151
23 H 0.068 0.932
24 H 0.089 0.911
25 H 0.075 0.925
26 H 0.090 0.910
27 H 0.099 0.901
28 H 0.159 0.841
29 H 0.155 0.845
30 H 0.074 0.926
31 H 0.091 0.909
32 H 0.161 0.839
33 H 0.088 0.912
34 H 0.092 0.908
35 H 0.078 0.922
36 H 0.067 0.933
37 H 0.029 0.971
38 H 0.026 0.974
39 H 0.082 0.918
40 H 0.132 0.868
41 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -19.848 -3.362 14.726 24.942
hybrid contribution 0.761 0.407 0.673 1.094
sum -19.088 -2.955 15.399 24.702
Atomic orbital electron populations
1.21717 0.93898 1.02423 1.01923 1.20593 0.96800 0.91425 1.03431
1.20197 0.98654 0.97196 0.93013 1.21261 1.00053 0.94832 0.98236
1.21250 0.99259 0.95281 0.97609 1.19896 0.99890 0.96480 0.93574
1.20844 0.87170 0.92686 1.01622 1.60286 1.07033 1.14553 1.51124
1.21937 0.92178 0.89763 1.01804 1.22718 0.95279 0.97395 0.87325
1.87979 1.22340 1.82703 1.38503 1.20288 0.79357 0.94911 0.95148
1.21184 0.92988 1.41309 1.02728 0.95577 1.25897 1.01059 0.94236
0.97580 1.70045 1.19230 1.44880 1.24230 0.85555 0.77514 0.80175
0.78740 1.18435 1.19750 1.16773 1.21182 0.98620 0.95375 0.98052
1.21232 1.00528 0.94771 0.98540 0.93157 0.91087 0.92529 0.90952
0.90074 0.84136 0.84511 0.92594 0.90903 0.83877 0.91218 0.90761
0.92229 0.93325 0.97086 0.97442 0.91816 0.86821 0.85461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16
2 C -0.09 -1.32 6.06 29.85 0.18 -1.14 16
3 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16
4 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16
5 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16
6 C -0.10 -2.41 5.39 -19.86 -0.11 -2.52 16
7 C 0.10 2.47 5.81 85.56 0.50 2.97 16
8 N -0.70 -20.16 6.44 -517.91 -3.33 -23.49 16
9 C 0.07 1.96 6.07 86.30 0.52 2.48 16
10 C 0.05 1.68 6.22 71.98 0.45 2.13 16
11 O -0.40 -19.12 10.27 -148.98 -1.53 -20.65 16
12 C 0.18 9.28 4.76 71.24 0.34 9.62 16
13 C -0.54 -34.42 9.99 25.60 0.26 -34.16 16
14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16
15 C 0.01 0.60 5.47 84.65 0.46 1.06 16
16 N -0.94 -60.96 13.96 21.45 0.30 -60.66 16
17 Si 0.96 44.29 27.47 68.60 1.88 46.18 16
18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16
19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
20 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16
21 C -0.11 -3.03 9.70 22.27 0.22 -2.82 16
22 C -0.13 -3.17 9.70 22.27 0.22 -2.96 16
23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
26 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16
27 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16
28 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16
29 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16
30 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16
31 H 0.07 1.78 8.08 -2.38 -0.02 1.76 16
32 H 0.34 9.30 8.72 -89.70 -0.78 8.52 16
33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
37 H 0.01 0.56 7.20 -2.38 -0.02 0.55 16
38 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16
39 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16
40 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16
41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16
Total: -1.00 -74.45 343.93 1.54 -72.91
By element:
Atomic # 1 Polarization: 18.49 SS G_CDS: 0.15 Total: 18.64 kcal
Atomic # 6 Polarization: -36.99 SS G_CDS: 4.07 Total: -32.92 kcal
Atomic # 7 Polarization: -81.12 SS G_CDS: -3.04 Total: -84.16 kcal
Atomic # 8 Polarization: -19.12 SS G_CDS: -1.53 Total: -20.65 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal
Total: -74.45 1.54 -72.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385406007.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.334 kcal
(2) G-P(sol) polarization free energy of solvation -74.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds