Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47217 * 2 1 4 4 C 1.38128 * 119.96126 * 265.25132 * 3 2 1 5 5 C 1.38887 * 119.92220 * 180.22764 * 4 3 2 6 6 N 1.39679 * 120.07586 * 179.79360 * 5 4 3 7 7 C 1.46499 * 120.00084 * 179.72804 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47405 * 64.99638 * 8 7 6 10 10 C 1.42901 * 113.99649 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46545 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00589 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99844 * 180.02562 * 11 10 9 14 14 N 1.31502 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46818 * 90.00144 * 15 13 11 17 17 H 1.48498 * 109.47067 * 209.99968 * 15 13 11 18 18 H 1.48496 * 109.47458 * 330.00345 * 15 13 11 19 19 C 1.38936 * 119.85394 * 359.51996 * 5 4 3 20 20 C 1.38080 * 119.91903 * 0.25187 * 19 5 4 21 21 C 1.38264 * 119.96367 * 84.99944 * 3 2 1 22 22 C 1.50701 * 119.92143 * 359.97438 * 21 3 2 23 23 H 1.08993 * 109.47088 * 300.00530 * 1 2 3 24 24 H 1.09006 * 109.47301 * 60.00225 * 1 2 3 25 25 H 1.09001 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47289 * 239.99857 * 2 1 3 27 27 H 1.09006 * 109.47301 * 119.99775 * 2 1 3 28 28 H 1.07997 * 120.04196 * 0.02562 * 4 3 2 29 29 H 0.97000 * 119.99495 * 359.72173 * 6 5 4 30 30 H 1.09002 * 109.47391 * 59.99811 * 7 6 5 31 31 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 32 32 H 1.09002 * 109.46642 * 184.99913 * 8 7 6 33 33 H 1.09002 * 109.47069 * 304.99442 * 8 7 6 34 34 H 1.08990 * 109.47463 * 299.99806 * 10 9 8 35 35 H 1.08992 * 109.47069 * 60.00902 * 10 9 8 36 36 H 0.97004 * 120.00403 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.04162 * 180.27077 * 19 5 4 38 38 H 1.08005 * 119.96171 * 179.97438 * 20 19 5 39 39 H 1.09008 * 109.47083 * 270.01920 * 22 21 3 40 40 H 1.08995 * 109.47329 * 30.01992 * 22 21 3 41 41 H 1.09000 * 109.46853 * 150.02913 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3557 2.0382 -1.1926 5 6 2.8231 3.3461 -1.1912 6 7 3.1551 3.9720 -2.3950 7 6 3.6423 5.3536 -2.3922 8 6 3.9302 5.7957 -3.8284 9 8 2.7098 5.8266 -4.5710 10 6 2.8682 6.2299 -5.9328 11 6 1.5256 6.2262 -6.6171 12 1 0.6398 5.9445 -6.0671 13 6 1.4279 6.5824 -7.9456 14 7 2.5064 6.9249 -8.6154 15 14 -0.2365 6.5785 -8.7936 16 1 -0.8704 7.9134 -8.6459 17 1 -0.0566 6.2728 -10.2356 18 1 -1.1057 5.5465 -8.1734 19 6 2.9543 4.0324 0.0096 20 6 2.6247 3.4108 1.1977 21 6 2.1641 2.1067 1.1933 22 6 1.8043 1.4319 2.4919 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2483 1.5035 -2.1247 29 1 3.0631 3.4918 -3.2327 30 1 4.5569 5.4152 -1.8024 31 1 2.8846 6.0051 -1.9568 32 1 4.3757 6.7905 -3.8198 33 1 4.6209 5.0923 -4.2935 34 1 3.2914 7.2337 -5.9676 35 1 3.5368 5.5357 -6.4418 36 1 2.4378 7.1752 -9.5501 37 1 3.3132 5.0509 0.0138 38 1 2.7268 3.9435 2.1317 39 1 0.7524 1.6106 2.7150 40 1 1.9803 0.3598 2.4051 41 1 2.4199 1.8375 3.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385406600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = -45.013093 kcal Electronic energy + Delta-G solvation = -18979.615063 eV Core-core repulsion = 16051.415521 eV Total energy + Delta-G solvation = -2928.199542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68626 -37.33582 -35.81082 -33.57038 -32.79006 -31.70980 -29.49487 -28.89318 -26.95049 -25.30960 -24.03398 -22.48951 -22.14834 -21.61728 -19.75025 -17.08014 -16.46121 -16.11443 -15.78659 -15.18978 -14.94089 -14.57694 -14.46378 -13.94512 -13.72691 -13.43854 -13.30248 -13.20851 -13.09318 -12.63094 -12.13582 -11.98895 -11.82842 -11.78876 -11.43201 -11.33869 -10.90282 -10.86100 -10.80691 -10.66600 -10.53706 -10.08786 -9.64152 -9.17573 -8.92675 -8.60657 -8.26858 -7.09491 -6.16243 -4.18375 1.55926 1.75491 3.27397 3.32532 3.37932 3.67603 3.96968 4.29616 4.73951 4.76494 4.88586 5.06313 5.18937 5.20428 5.27718 5.28948 5.34248 5.39396 5.53491 5.57146 5.63240 5.70738 5.79790 5.85343 5.87730 5.92891 5.95983 6.06946 6.13815 6.19904 6.22227 6.52178 6.59746 6.86247 7.00030 7.04977 7.33877 7.57997 7.73689 7.99568 8.07814 8.47294 8.94347 9.46835 10.95207 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.003426 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.588676 B = 8171.166759 C = 8975.336840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.035 4.035 4 C -0.195 4.195 5 C 0.225 3.775 6 N -0.735 5.735 7 C 0.130 3.870 8 C 0.049 3.951 9 O -0.393 6.393 10 C 0.195 3.805 11 C -0.517 4.517 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.204 4.204 20 C -0.069 4.069 21 C -0.157 4.157 22 C -0.104 4.104 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.405 0.595 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.006 0.994 35 H 0.005 0.995 36 H 0.265 0.735 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -10.538 19.236 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.036 4.036 4 C -0.218 4.218 5 C 0.120 3.880 6 N -0.364 5.364 7 C 0.005 3.995 8 C -0.029 4.029 9 O -0.313 6.313 10 C 0.121 3.879 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.227 4.227 20 C -0.088 4.088 21 C -0.159 4.159 22 C -0.160 4.160 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.241 0.759 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.401 -10.303 19.120 21.764 hybrid contribution -0.470 0.169 -1.154 1.257 sum 0.931 -10.134 17.966 20.648 Atomic orbital electron populations 1.21716 0.94788 1.01367 1.02432 1.20573 0.96201 0.93111 1.02480 1.19385 0.96736 0.95309 0.92133 1.20430 1.08902 0.94461 0.97978 1.17860 0.92195 0.91435 0.86538 1.44736 1.71888 1.13788 1.05946 1.21387 0.98625 0.82921 0.96523 1.22473 0.89598 0.99598 0.91192 1.87902 1.27855 1.89465 1.26085 1.20222 0.97946 0.93841 0.75902 1.21046 0.93423 1.45859 0.95145 0.91544 1.24952 0.97505 0.95043 0.96964 1.69954 1.28162 1.45649 1.09973 0.86326 0.83148 0.78608 0.78371 1.20404 1.21031 1.19598 1.20588 1.10169 1.00619 0.91339 1.20679 0.97062 0.93928 0.97096 1.19372 1.06877 0.95127 0.94536 1.20673 1.00940 1.00071 0.94327 0.92539 0.92411 0.92694 0.91355 0.90919 0.86421 0.75924 0.91711 0.91689 0.92878 0.93882 0.97626 0.97673 0.92588 0.86388 0.86670 0.92187 0.91942 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.15 0.37 -0.97 16 2 C -0.09 -0.84 5.56 -27.88 -0.15 -1.00 16 3 C -0.03 -0.43 5.13 -104.65 -0.54 -0.96 16 4 C -0.19 -2.67 9.53 -39.38 -0.38 -3.05 16 5 C 0.22 3.28 6.65 -83.78 -0.56 2.72 16 6 N -0.74 -11.19 5.68 -58.63 -0.33 -11.52 16 7 C 0.13 1.91 5.30 -4.04 -0.02 1.89 16 8 C 0.05 0.87 6.07 37.16 0.23 1.09 16 9 O -0.39 -9.19 10.27 -35.23 -0.36 -9.56 16 10 C 0.20 5.26 5.69 36.01 0.20 5.47 16 11 C -0.52 -15.13 9.43 -34.44 -0.32 -15.46 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.72 13.28 55.43 0.74 -25.98 16 15 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.20 -2.75 9.31 -39.38 -0.37 -3.11 16 20 C -0.07 -0.83 9.69 -39.62 -0.38 -1.22 16 21 C -0.16 -1.85 5.88 -104.59 -0.62 -2.46 16 22 C -0.10 -0.92 9.37 36.01 0.34 -0.59 16 23 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.07 0.61 6.15 -51.93 -0.32 0.30 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.41 6.38 8.49 -40.82 -0.35 6.03 16 30 H 0.06 0.80 7.95 -51.93 -0.41 0.38 16 31 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.12 1.46 6.73 -52.49 -0.35 1.11 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.06 0.50 6.02 -51.93 -0.31 0.19 16 41 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -31.02 339.63 -8.92 -39.93 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.76 Total: 1.35 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.30 Total: -16.12 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.40 Total: -37.50 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.36 Total: -9.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.02 -8.92 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.082 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds