Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47217 * 2 1 4 4 C 1.38128 * 119.96126 * 265.25132 * 3 2 1 5 5 C 1.38887 * 119.92220 * 180.22764 * 4 3 2 6 6 N 1.39679 * 120.07586 * 179.79360 * 5 4 3 7 7 C 1.46499 * 120.00084 * 179.72804 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47405 * 64.99638 * 8 7 6 10 10 C 1.42901 * 113.99649 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46545 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00589 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99844 * 180.02562 * 11 10 9 14 14 N 1.31502 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46818 * 90.00144 * 15 13 11 17 17 H 1.48498 * 109.47067 * 209.99968 * 15 13 11 18 18 H 1.48496 * 109.47458 * 330.00345 * 15 13 11 19 19 C 1.38936 * 119.85394 * 359.51996 * 5 4 3 20 20 C 1.38080 * 119.91903 * 0.25187 * 19 5 4 21 21 C 1.38264 * 119.96367 * 84.99944 * 3 2 1 22 22 C 1.50701 * 119.92143 * 359.97438 * 21 3 2 23 23 H 1.08993 * 109.47088 * 300.00530 * 1 2 3 24 24 H 1.09006 * 109.47301 * 60.00225 * 1 2 3 25 25 H 1.09001 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47289 * 239.99857 * 2 1 3 27 27 H 1.09006 * 109.47301 * 119.99775 * 2 1 3 28 28 H 1.07997 * 120.04196 * 0.02562 * 4 3 2 29 29 H 0.97000 * 119.99495 * 359.72173 * 6 5 4 30 30 H 1.09002 * 109.47391 * 59.99811 * 7 6 5 31 31 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 32 32 H 1.09002 * 109.46642 * 184.99913 * 8 7 6 33 33 H 1.09002 * 109.47069 * 304.99442 * 8 7 6 34 34 H 1.08990 * 109.47463 * 299.99806 * 10 9 8 35 35 H 1.08992 * 109.47069 * 60.00902 * 10 9 8 36 36 H 0.97004 * 120.00403 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.04162 * 180.27077 * 19 5 4 38 38 H 1.08005 * 119.96171 * 179.97438 * 20 19 5 39 39 H 1.09008 * 109.47083 * 270.01920 * 22 21 3 40 40 H 1.08995 * 109.47329 * 30.01992 * 22 21 3 41 41 H 1.09000 * 109.46853 * 150.02913 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3557 2.0382 -1.1926 5 6 2.8231 3.3461 -1.1912 6 7 3.1551 3.9720 -2.3950 7 6 3.6423 5.3536 -2.3922 8 6 3.9302 5.7957 -3.8284 9 8 2.7098 5.8266 -4.5710 10 6 2.8682 6.2299 -5.9328 11 6 1.5256 6.2262 -6.6171 12 1 0.6398 5.9445 -6.0671 13 6 1.4279 6.5824 -7.9456 14 7 2.5064 6.9249 -8.6154 15 14 -0.2365 6.5785 -8.7936 16 1 -0.8704 7.9134 -8.6459 17 1 -0.0566 6.2728 -10.2356 18 1 -1.1057 5.5465 -8.1734 19 6 2.9543 4.0324 0.0096 20 6 2.6247 3.4108 1.1977 21 6 2.1641 2.1067 1.1933 22 6 1.8043 1.4319 2.4919 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2483 1.5035 -2.1247 29 1 3.0631 3.4918 -3.2327 30 1 4.5569 5.4152 -1.8024 31 1 2.8846 6.0051 -1.9568 32 1 4.3757 6.7905 -3.8198 33 1 4.6209 5.0923 -4.2935 34 1 3.2914 7.2337 -5.9676 35 1 3.5368 5.5357 -6.4418 36 1 2.4378 7.1752 -9.5501 37 1 3.3132 5.0509 0.0138 38 1 2.7268 3.9435 2.1317 39 1 0.7524 1.6106 2.7150 40 1 1.9803 0.3598 2.4051 41 1 2.4199 1.8375 3.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385406600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = -62.840864 kcal Electronic energy + Delta-G solvation = -18980.388133 eV Core-core repulsion = 16051.415521 eV Total energy + Delta-G solvation = -2928.972612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66146 -38.92180 -37.07660 -35.01323 -34.38903 -32.81142 -30.42979 -30.24878 -28.83638 -26.31360 -24.97327 -24.53515 -23.34984 -22.65547 -20.73318 -18.74280 -18.01342 -17.57508 -17.25146 -16.53044 -16.33142 -16.04644 -15.56137 -15.12250 -14.99503 -14.72412 -14.44694 -14.22378 -14.14020 -13.74488 -13.41998 -13.27163 -13.05573 -12.84032 -12.74103 -12.69940 -12.54310 -12.37997 -12.21548 -11.93652 -11.61481 -11.41977 -11.33505 -10.92890 -10.64370 -10.30456 -9.57757 -8.36087 -8.15713 -6.48498 0.57801 0.76826 1.37772 1.40139 1.52267 2.31308 2.53742 2.97969 2.98466 3.10669 3.89529 4.01167 4.05319 4.17842 4.26515 4.30390 4.46943 4.47791 4.54643 4.58093 4.64064 4.72715 4.75268 4.85503 4.90202 4.94927 5.00427 5.10149 5.13446 5.15594 5.22524 5.31215 5.43723 5.50635 5.53169 5.64969 5.91451 5.93442 6.10246 6.45797 6.52094 6.76416 6.81730 7.23517 8.76064 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.003426 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.588676 B = 8171.166759 C = 8975.336840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.043 4.043 4 C -0.212 4.212 5 C 0.202 3.798 6 N -0.746 5.746 7 C 0.141 3.859 8 C 0.043 3.957 9 O -0.407 6.407 10 C 0.210 3.790 11 C -0.551 4.551 12 H 0.059 0.941 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.266 1.266 19 C -0.216 4.216 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.102 4.102 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.049 0.951 34 H -0.011 1.011 35 H -0.012 1.012 36 H 0.272 0.728 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -11.266 20.700 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.043 4.043 4 C -0.235 4.235 5 C 0.099 3.901 6 N -0.375 5.375 7 C 0.017 3.983 8 C -0.034 4.034 9 O -0.328 6.328 10 C 0.135 3.865 11 C -0.588 4.588 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.805 3.195 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.239 4.239 20 C -0.093 4.093 21 C -0.162 4.162 22 C -0.159 4.159 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.232 0.768 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.585 -11.037 20.624 23.399 hybrid contribution -0.152 0.356 -1.503 1.552 sum 0.433 -10.681 19.121 21.906 Atomic orbital electron populations 1.21696 0.94317 1.02335 1.01689 1.20625 0.96502 0.91699 1.03398 1.19730 0.96218 0.96568 0.91831 1.20599 1.09640 0.94566 0.98687 1.18078 0.93413 0.92029 0.86619 1.44752 1.72891 1.13853 1.06036 1.21330 0.99797 0.82707 0.94495 1.22781 0.87797 1.00692 0.92163 1.87854 1.31029 1.89325 1.24548 1.19826 0.96668 0.92361 0.77674 1.21376 0.94050 1.47163 0.96228 0.92293 1.25937 1.01855 0.93907 0.97389 1.70051 1.30503 1.45661 1.10589 0.85202 0.77879 0.79085 0.77377 1.19242 1.19775 1.19064 1.20797 1.10495 1.01090 0.91472 1.21022 0.96404 0.94317 0.97558 1.19796 1.05596 0.95137 0.95628 1.20725 1.01604 1.00546 0.92996 0.92293 0.94113 0.90890 0.91322 0.89123 0.86800 0.76751 0.88685 0.92290 0.91637 0.93310 0.99340 0.99425 0.91957 0.85684 0.84328 0.91424 0.90831 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.09 -1.52 5.56 29.85 0.17 -1.36 16 3 C -0.04 -1.01 5.13 -19.88 -0.10 -1.11 16 4 C -0.21 -5.89 9.53 22.40 0.21 -5.67 16 5 C 0.20 5.93 6.65 38.21 0.25 6.18 16 6 N -0.75 -23.09 5.68 -339.41 -1.93 -25.02 16 7 C 0.14 4.10 5.30 86.38 0.46 4.56 16 8 C 0.04 1.52 6.07 71.98 0.44 1.95 16 9 O -0.41 -19.57 10.27 -148.98 -1.53 -21.11 16 10 C 0.21 11.70 5.69 71.24 0.41 12.10 16 11 C -0.55 -32.94 9.43 25.60 0.24 -32.70 16 12 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 13 C 0.01 0.46 5.46 84.66 0.46 0.92 16 14 N -0.93 -55.70 13.28 21.45 0.28 -55.42 16 15 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C -0.22 -5.63 9.31 22.40 0.21 -5.42 16 20 C -0.07 -1.68 9.69 22.25 0.22 -1.46 16 21 C -0.16 -3.45 5.88 -19.84 -0.12 -3.57 16 22 C -0.10 -1.52 9.37 71.24 0.67 -0.86 16 23 H 0.06 0.95 7.91 -2.39 -0.02 0.93 16 24 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.22 8.05 -2.38 -0.02 1.20 16 27 H 0.09 1.29 6.15 -2.38 -0.01 1.28 16 28 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.40 13.06 8.49 -92.71 -0.79 12.28 16 30 H 0.10 2.20 7.95 -2.39 -0.02 2.18 16 31 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.13 2.96 6.73 -2.91 -0.02 2.95 16 38 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 0.94 6.02 -2.39 -0.01 0.92 16 41 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 Total: -1.00 -66.81 339.63 3.29 -63.52 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.21 Total: 19.58 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.22 Total: -28.13 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -1.64 Total: -80.44 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.53 Total: -21.11 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.81 3.29 -63.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.684 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds