Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47509 * 2 1 4 4 C 1.50698 * 109.47669 * 120.00509 * 2 1 3 5 5 C 1.38129 * 120.03444 * 305.02362 * 4 2 1 6 6 C 1.38263 * 120.07473 * 179.72451 * 5 4 2 7 7 C 1.38305 * 120.14969 * 0.29000 * 6 5 4 8 8 C 1.38086 * 120.07533 * 359.97438 * 7 6 5 9 9 C 1.38889 * 120.04184 * 125.29314 * 4 2 1 10 10 N 1.39675 * 120.07630 * 0.02562 * 9 4 2 11 11 C 1.46498 * 120.00188 * 174.77691 * 10 9 4 12 12 C 1.52996 * 109.47233 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.46804 * 65.00372 * 12 11 10 14 14 C 1.42899 * 113.99918 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47232 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99737 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00248 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99754 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46806 * 119.99923 * 19 17 15 22 22 H 1.48499 * 109.46961 * 239.99510 * 19 17 15 23 23 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46466 * 299.99903 * 1 2 3 25 25 H 1.08998 * 109.47366 * 59.99543 * 1 2 3 26 26 H 1.09004 * 109.46910 * 240.00392 * 2 1 3 27 27 H 1.08997 * 109.47734 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47062 * 300.00315 * 3 2 1 29 29 H 1.08997 * 109.46899 * 59.99973 * 3 2 1 30 30 H 1.08008 * 119.95967 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.92488 * 180.27745 * 6 5 4 32 32 H 1.07994 * 119.96191 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03724 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99831 * 354.78506 * 10 9 4 35 35 H 1.08996 * 109.46860 * 300.00460 * 11 10 9 36 36 H 1.09002 * 109.46791 * 60.00528 * 11 10 9 37 37 H 1.08994 * 109.47280 * 185.00006 * 12 11 10 38 38 H 1.08998 * 109.47112 * 305.00452 * 12 11 10 39 39 H 1.08995 * 109.47388 * 299.99823 * 14 13 12 40 40 H 1.09003 * 109.47262 * 59.99931 * 14 13 12 41 41 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 6 1.6160 -0.3028 2.4827 6 6 2.0720 -0.9577 3.6117 7 6 2.9509 -2.0188 3.4919 8 6 3.3756 -2.4280 2.2433 9 6 2.9192 -1.7723 1.1067 10 7 3.3473 -2.1832 -0.1577 11 6 4.3685 -3.2261 -0.2823 12 6 4.6544 -3.4858 -1.7627 13 8 5.2335 -2.3179 -2.3480 14 6 5.5402 -2.4549 -3.7369 15 6 6.1420 -1.1710 -4.2475 16 1 6.2764 -0.3340 -3.5783 17 6 6.5201 -1.0646 -5.5691 18 7 6.3559 -2.0836 -6.3841 19 14 7.2653 0.5271 -6.2022 20 1 7.3426 1.5125 -5.0940 21 1 8.6301 0.2614 -6.7238 22 1 6.4163 1.0721 -7.2918 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.9301 0.5259 2.5797 31 1 1.7413 -0.6398 4.5895 32 1 3.3055 -2.5279 4.3759 33 1 4.0616 -3.2569 2.1505 34 1 2.9684 -1.7779 -0.9535 35 1 5.2833 -2.8997 0.2123 36 1 4.0101 -4.1432 0.1852 37 1 5.3475 -4.3216 -1.8577 38 1 3.7232 -3.7258 -2.2759 39 1 6.2515 -3.2694 -3.8734 40 1 4.6272 -2.6733 -4.2908 41 1 6.6222 -2.0089 -7.3139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385408214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = -39.545055 kcal Electronic energy + Delta-G solvation = -19536.635328 eV Core-core repulsion = 16608.672898 eV Total energy + Delta-G solvation = -2927.962430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76737 -37.17869 -35.27113 -35.10162 -32.76404 -30.38232 -29.71516 -27.67692 -27.06061 -26.58563 -23.76745 -22.46672 -22.17064 -20.98617 -19.78258 -17.50083 -16.50594 -16.03329 -15.78357 -15.47530 -14.74345 -14.48437 -14.14820 -13.89872 -13.80139 -13.64816 -13.43388 -13.10736 -12.99523 -12.30931 -12.00237 -11.98320 -11.86162 -11.60733 -11.28486 -11.06958 -10.87532 -10.86006 -10.73112 -10.51317 -10.43509 -10.08533 -9.88146 -9.16272 -8.93393 -8.61002 -8.27182 -7.14199 -6.16529 -4.18522 1.56031 1.80093 3.25790 3.32591 3.39048 3.66733 4.01978 4.29453 4.73296 4.79064 4.88237 5.14882 5.20324 5.22260 5.28740 5.32099 5.40922 5.52344 5.58196 5.65433 5.68803 5.84641 5.88075 5.93260 5.95164 6.01182 6.07303 6.15971 6.21206 6.23462 6.35616 6.53545 6.69794 6.77951 6.99792 7.04607 7.33516 7.56947 7.73744 7.98619 8.07545 8.46887 8.94482 9.46812 10.94979 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.004262 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.287676 B = 6568.047749 C = 7289.721335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.154 4.154 5 C -0.069 4.069 6 C -0.189 4.189 7 C -0.077 4.077 8 C -0.202 4.202 9 C 0.228 3.772 10 N -0.735 5.735 11 C 0.129 3.871 12 C 0.049 3.951 13 O -0.393 6.393 14 C 0.194 3.806 15 C -0.515 4.515 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.405 0.595 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 0.477 16.222 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.158 4.158 5 C -0.087 4.087 6 C -0.209 4.209 7 C -0.096 4.096 8 C -0.225 4.225 9 C 0.122 3.878 10 N -0.366 5.366 11 C 0.005 3.995 12 C -0.029 4.029 13 O -0.313 6.313 14 C 0.120 3.880 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.889 0.428 16.092 18.893 hybrid contribution 0.324 0.509 -0.949 1.125 sum -9.565 0.937 15.143 17.935 Atomic orbital electron populations 1.21849 0.94741 1.01688 1.01550 1.19907 0.95483 0.96031 0.95462 1.21824 1.01633 0.95010 1.01360 1.19310 1.02790 0.98512 0.95229 1.20659 0.98241 0.98392 0.91446 1.20769 1.02662 0.99528 0.97947 1.20803 0.96243 0.96158 0.96398 1.20601 1.06592 1.03709 0.91566 1.17715 0.92237 0.91965 0.85853 1.44882 1.43956 1.42849 1.04896 1.21393 0.91297 0.90572 0.96257 1.22472 0.97439 0.90746 0.92226 1.87903 1.81559 1.34034 1.27763 1.20233 0.94683 0.97799 0.75251 1.21076 1.40675 0.98799 0.94771 0.91500 1.24944 0.95831 0.97289 0.96364 1.69969 1.47845 1.30525 1.05395 0.86289 0.78723 0.82758 0.78802 1.19450 1.20788 1.20791 0.92785 0.92672 0.92593 0.90895 0.92329 0.92556 0.92839 0.86680 0.87015 0.86744 0.86387 0.75710 0.91648 0.91727 0.92860 0.93936 0.97624 0.97687 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.95 37.16 0.33 -1.17 16 2 C -0.05 -0.63 3.04 -91.77 -0.28 -0.91 16 3 C -0.14 -1.71 9.05 37.16 0.34 -1.38 16 4 C -0.15 -2.06 4.80 -104.42 -0.50 -2.56 16 5 C -0.07 -0.83 8.75 -39.61 -0.35 -1.17 16 6 C -0.19 -2.18 10.04 -39.55 -0.40 -2.58 16 7 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 8 C -0.20 -2.67 9.32 -39.38 -0.37 -3.04 16 9 C 0.23 3.29 6.63 -83.79 -0.56 2.73 16 10 N -0.74 -11.14 5.60 -58.64 -0.33 -11.47 16 11 C 0.13 1.89 5.34 -4.04 -0.02 1.87 16 12 C 0.05 0.86 6.07 37.16 0.23 1.08 16 13 O -0.39 -9.12 10.27 -35.23 -0.36 -9.48 16 14 C 0.19 5.22 5.69 36.01 0.20 5.42 16 15 C -0.52 -14.99 9.43 -34.44 -0.32 -15.31 16 16 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.53 7.13 -51.93 -0.37 0.16 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.01 5.68 -51.93 -0.29 0.71 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 30 H 0.12 1.18 7.10 -52.48 -0.37 0.80 16 31 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.43 6.74 -52.49 -0.35 1.07 16 34 H 0.40 6.43 6.12 -40.82 -0.25 6.18 16 35 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.06 0.78 7.74 -51.93 -0.40 0.38 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -30.58 336.33 -8.73 -39.31 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.64 Total: 2.54 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.19 Total: -16.79 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.41 Total: -37.33 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.36 Total: -9.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.58 -8.73 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.236 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds