Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47509 * 2 1 4 4 C 1.50698 * 109.47669 * 120.00509 * 2 1 3 5 5 C 1.38129 * 120.03444 * 305.02362 * 4 2 1 6 6 C 1.38263 * 120.07473 * 179.72451 * 5 4 2 7 7 C 1.38305 * 120.14969 * 0.29000 * 6 5 4 8 8 C 1.38086 * 120.07533 * 359.97438 * 7 6 5 9 9 C 1.38889 * 120.04184 * 125.29314 * 4 2 1 10 10 N 1.39675 * 120.07630 * 0.02562 * 9 4 2 11 11 C 1.46498 * 120.00188 * 174.77691 * 10 9 4 12 12 C 1.52996 * 109.47233 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.46804 * 65.00372 * 12 11 10 14 14 C 1.42899 * 113.99918 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47232 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99737 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00248 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99754 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46806 * 119.99923 * 19 17 15 22 22 H 1.48499 * 109.46961 * 239.99510 * 19 17 15 23 23 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46466 * 299.99903 * 1 2 3 25 25 H 1.08998 * 109.47366 * 59.99543 * 1 2 3 26 26 H 1.09004 * 109.46910 * 240.00392 * 2 1 3 27 27 H 1.08997 * 109.47734 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47062 * 300.00315 * 3 2 1 29 29 H 1.08997 * 109.46899 * 59.99973 * 3 2 1 30 30 H 1.08008 * 119.95967 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.92488 * 180.27745 * 6 5 4 32 32 H 1.07994 * 119.96191 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03724 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99831 * 354.78506 * 10 9 4 35 35 H 1.08996 * 109.46860 * 300.00460 * 11 10 9 36 36 H 1.09002 * 109.46791 * 60.00528 * 11 10 9 37 37 H 1.08994 * 109.47280 * 185.00006 * 12 11 10 38 38 H 1.08998 * 109.47112 * 305.00452 * 12 11 10 39 39 H 1.08995 * 109.47388 * 299.99823 * 14 13 12 40 40 H 1.09003 * 109.47262 * 59.99931 * 14 13 12 41 41 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 6 1.6160 -0.3028 2.4827 6 6 2.0720 -0.9577 3.6117 7 6 2.9509 -2.0188 3.4919 8 6 3.3756 -2.4280 2.2433 9 6 2.9192 -1.7723 1.1067 10 7 3.3473 -2.1832 -0.1577 11 6 4.3685 -3.2261 -0.2823 12 6 4.6544 -3.4858 -1.7627 13 8 5.2335 -2.3179 -2.3480 14 6 5.5402 -2.4549 -3.7369 15 6 6.1420 -1.1710 -4.2475 16 1 6.2764 -0.3340 -3.5783 17 6 6.5201 -1.0646 -5.5691 18 7 6.3559 -2.0836 -6.3841 19 14 7.2653 0.5271 -6.2022 20 1 7.3426 1.5125 -5.0940 21 1 8.6301 0.2614 -6.7238 22 1 6.4163 1.0721 -7.2918 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.9301 0.5259 2.5797 31 1 1.7413 -0.6398 4.5895 32 1 3.3055 -2.5279 4.3759 33 1 4.0616 -3.2569 2.1505 34 1 2.9684 -1.7779 -0.9535 35 1 5.2833 -2.8997 0.2123 36 1 4.0101 -4.1432 0.1852 37 1 5.3475 -4.3216 -1.8577 38 1 3.7232 -3.7258 -2.2759 39 1 6.2515 -3.2694 -3.8734 40 1 4.6272 -2.6733 -4.2908 41 1 6.6222 -2.0089 -7.3139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385408214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = -56.844057 kcal Electronic energy + Delta-G solvation = -19537.385469 eV Core-core repulsion = 16608.672898 eV Total energy + Delta-G solvation = -2928.712571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75723 -38.83711 -36.42898 -36.17096 -34.89536 -31.68037 -30.65498 -29.41261 -28.07965 -27.97063 -24.88805 -24.47578 -23.38736 -22.06241 -20.74754 -18.78517 -18.39709 -17.57878 -17.23003 -16.62439 -16.37476 -16.04922 -15.36040 -15.06792 -14.89103 -14.76237 -14.64762 -14.44945 -14.18056 -13.69302 -13.36401 -13.20821 -12.97883 -12.84057 -12.80616 -12.69241 -12.42531 -12.29152 -12.02690 -11.96024 -11.46325 -11.39350 -11.32461 -10.94610 -10.89317 -10.30171 -9.55484 -8.35628 -8.19768 -6.47750 0.61106 0.82995 1.38022 1.38776 1.53555 2.31622 2.54522 2.98609 3.05553 3.11237 3.82763 3.93948 4.01419 4.15589 4.27466 4.34632 4.37946 4.46003 4.50623 4.63484 4.67940 4.72456 4.74810 4.81225 4.88122 4.96467 4.98924 5.02698 5.13958 5.15765 5.29470 5.30995 5.39759 5.51436 5.57793 5.75048 5.83675 5.92029 6.10357 6.46357 6.53053 6.77108 6.82317 7.24328 8.76772 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.004262 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.287676 B = 6568.047749 C = 7289.721335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.165 4.165 5 C -0.074 4.074 6 C -0.187 4.187 7 C -0.082 4.082 8 C -0.213 4.213 9 C 0.201 3.799 10 N -0.747 5.747 11 C 0.140 3.860 12 C 0.042 3.958 13 O -0.407 6.407 14 C 0.209 3.791 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.980 3.020 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.270 1.270 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.397 0.603 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.047 0.953 39 H -0.011 1.011 40 H -0.012 1.012 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 1.402 17.614 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.207 4.207 7 C -0.100 4.100 8 C -0.236 4.236 9 C 0.097 3.903 10 N -0.378 5.378 11 C 0.016 3.984 12 C -0.035 4.035 13 O -0.327 6.327 14 C 0.134 3.866 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.803 3.197 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.195 1.195 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.386 1.337 17.520 20.411 hybrid contribution 0.425 0.168 -1.282 1.361 sum -9.962 1.505 16.238 19.109 Atomic orbital electron populations 1.21799 0.93124 1.01730 1.02574 1.19911 0.96809 0.95824 0.94534 1.21795 1.00106 0.95138 1.02440 1.19505 1.02869 0.98486 0.96088 1.20933 0.98405 0.98919 0.91001 1.21147 1.01772 0.98865 0.98954 1.21144 0.95950 0.96278 0.96672 1.20826 1.06872 1.04022 0.91874 1.17992 0.93411 0.93101 0.85763 1.44897 1.44382 1.43387 1.05135 1.21331 0.91295 0.91907 0.93887 1.22779 0.97547 0.89328 0.93810 1.87857 1.82088 1.36948 1.25776 1.19838 0.93192 0.96479 0.77071 1.21384 1.42095 0.99462 0.95600 0.92344 1.25907 0.95704 1.01096 0.96236 1.70064 1.48141 1.32629 1.05982 0.85177 0.78221 0.78018 0.78260 1.19066 1.19575 1.19548 0.93222 0.91159 0.92019 0.92996 0.94609 0.92087 0.91121 0.84752 0.84459 0.84278 0.85739 0.76615 0.92323 0.88669 0.91641 0.93443 0.99356 0.99444 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.95 71.98 0.64 -2.08 16 2 C -0.05 -1.30 3.04 -11.54 -0.04 -1.34 16 3 C -0.14 -3.30 9.05 71.98 0.65 -2.65 16 4 C -0.16 -4.32 4.80 -19.73 -0.09 -4.41 16 5 C -0.07 -1.63 8.75 22.25 0.19 -1.44 16 6 C -0.19 -3.82 10.04 22.29 0.22 -3.59 16 7 C -0.08 -1.75 10.04 22.25 0.22 -1.53 16 8 C -0.21 -5.40 9.32 22.40 0.21 -5.19 16 9 C 0.20 5.76 6.63 38.21 0.25 6.01 16 10 N -0.75 -23.04 5.60 -339.43 -1.90 -24.94 16 11 C 0.14 4.07 5.34 86.38 0.46 4.53 16 12 C 0.04 1.51 6.07 71.98 0.44 1.94 16 13 O -0.41 -19.50 10.27 -148.98 -1.53 -21.03 16 14 C 0.21 11.64 5.69 71.24 0.41 12.04 16 15 C -0.55 -32.64 9.43 25.60 0.24 -32.40 16 16 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 17 C 0.01 0.53 5.46 84.65 0.46 1.00 16 18 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 19 Si 0.98 44.42 29.54 68.60 2.03 46.44 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.19 7.13 -2.38 -0.02 1.17 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.51 5.68 -2.38 -0.01 1.49 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.42 7.70 -2.39 -0.02 1.40 16 30 H 0.13 2.36 7.10 -2.91 -0.02 2.34 16 31 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.12 2.86 6.74 -2.91 -0.02 2.84 16 34 H 0.40 13.21 6.12 -92.71 -0.57 12.64 16 35 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.10 2.19 7.74 -2.39 -0.02 2.17 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -65.99 336.33 3.59 -62.40 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.43 Total: 21.42 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.28 Total: -29.09 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.62 Total: -80.15 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.53 Total: -21.03 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.99 3.59 -62.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.556 kcal (2) G-P(sol) polarization free energy of solvation -65.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds