Wall clock time and date at job start Mon Mar 30 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 116.99906 * 2 1 4 4 C 1.38501 * 120.08234 * 0.02947 * 3 2 1 5 5 C 1.38285 * 120.01514 * 179.97438 * 4 3 2 6 6 C 1.50708 * 119.90648 * 179.97438 * 5 4 3 7 7 C 1.38247 * 120.18332 * 359.97438 * 5 4 3 8 8 C 1.38222 * 120.16321 * 359.67855 * 7 5 4 9 9 C 1.38732 * 119.97530 * 0.62035 * 8 7 5 10 10 N 1.39963 * 120.09229 * 179.67851 * 9 8 7 11 11 C 1.46504 * 119.99503 * 359.72225 * 10 9 8 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47188 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00218 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00270 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46778 * 60.00425 * 19 17 15 21 21 H 1.48496 * 109.47592 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47134 * 300.00732 * 19 17 15 23 23 H 1.09000 * 109.47379 * 59.99524 * 1 2 3 24 24 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46961 * 299.99471 * 1 2 3 26 26 H 1.07994 * 119.99347 * 359.97152 * 4 3 2 27 27 H 1.09002 * 109.46753 * 89.99994 * 6 5 4 28 28 H 1.09000 * 109.47134 * 209.99802 * 6 5 4 29 29 H 1.08999 * 109.47111 * 330.00384 * 6 5 4 30 30 H 1.08008 * 119.92082 * 179.97438 * 7 5 4 31 31 H 1.07994 * 120.01676 * 180.30077 * 8 7 5 32 32 H 0.96992 * 120.00531 * 179.72589 * 10 9 8 33 33 H 1.09001 * 109.46891 * 60.00379 * 11 10 9 34 34 H 1.08993 * 109.47378 * 299.99751 * 11 10 9 35 35 H 1.09001 * 109.46801 * 300.00349 * 12 11 10 36 36 H 1.09001 * 109.46998 * 59.99945 * 12 11 10 37 37 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 38 38 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 39 39 H 1.09000 * 109.47380 * 300.00763 * 14 13 12 40 40 H 1.09001 * 109.46997 * 60.00426 * 14 13 12 41 41 H 0.97007 * 119.99867 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 0.0006 5 6 1.9230 3.6059 0.0012 6 6 1.1016 4.8695 0.0012 7 6 3.3035 3.6811 0.0016 8 6 4.0619 2.5256 0.0082 9 6 3.4377 1.2866 0.0014 10 7 4.2034 0.1150 0.0013 11 6 5.6662 0.1960 0.0023 12 6 6.2551 -1.2161 0.0026 13 6 7.7828 -1.1316 0.0042 14 6 8.3717 -2.5436 0.0051 15 6 9.8764 -2.4604 0.0061 16 1 10.3639 -1.4967 0.0064 17 6 10.6307 -3.6145 0.0076 18 7 10.0370 -4.7881 0.0077 19 14 12.4958 -3.5113 0.0095 20 1 12.9501 -2.7844 1.2221 21 1 13.0675 -4.8819 0.0103 22 1 12.9527 -2.7856 -1.2029 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2153 2.3194 0.0006 27 1 0.9033 5.1738 1.0290 28 1 1.6499 5.6593 -0.5122 29 1 0.1576 4.6891 -0.5129 30 1 3.7905 4.6451 0.0016 31 1 5.1401 2.5871 0.0135 32 1 3.7656 -0.7505 0.0006 33 1 6.0000 0.7287 0.8928 34 1 6.0011 0.7295 -0.8872 35 1 5.9201 -1.7493 0.8923 36 1 5.9213 -1.7492 -0.8877 37 1 8.1180 -0.5982 -0.8853 38 1 8.1162 -0.5987 0.8947 39 1 8.0363 -3.0766 0.8948 40 1 8.0383 -3.0769 -0.8851 41 1 10.5678 -5.6001 0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385771117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:36 Heat of formation + Delta-G solvation = -39.574262 kcal Electronic energy + Delta-G solvation = -18794.256424 eV Core-core repulsion = 15866.292727 eV Total energy + Delta-G solvation = -2927.963697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29948 -37.72886 -36.49287 -34.33007 -32.50912 -31.00796 -30.19191 -28.52512 -27.67269 -25.71454 -24.41130 -22.66773 -21.50832 -20.80977 -20.11540 -17.81958 -17.02242 -16.16643 -16.12674 -15.86135 -15.16231 -14.72682 -14.42683 -14.25911 -14.03862 -13.78754 -13.63090 -13.21178 -12.53864 -12.35297 -12.32303 -12.08878 -11.78937 -11.62698 -11.30183 -11.24034 -11.04981 -10.96589 -10.69671 -10.55933 -10.46439 -9.77633 -9.65217 -9.30408 -9.05095 -8.55431 -8.33154 -7.04450 -5.98372 -4.00816 1.39297 1.55887 3.18292 3.34326 3.38546 3.41033 3.62462 3.79991 4.47287 4.70899 4.84091 4.95473 4.98972 5.05684 5.19387 5.31430 5.33124 5.37002 5.42739 5.47439 5.53723 5.58013 5.65807 5.78089 5.88159 6.12067 6.13602 6.17263 6.30285 6.41242 6.63184 6.75270 6.78149 6.88559 7.07042 7.17807 7.57025 7.69105 7.84014 7.91210 8.02018 8.44458 9.06353 9.63136 11.12980 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.002861 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.152650 B = 9783.481293 C =10521.977079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.049 3.951 4 C -0.161 4.161 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.102 4.102 8 C -0.169 4.169 9 C 0.199 3.801 10 N -0.741 5.741 11 C 0.124 3.876 12 C -0.129 4.129 13 C -0.106 4.106 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.404 0.596 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.372 15.622 0.000 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.235 6.235 3 C 0.001 3.999 4 C -0.181 4.181 5 C -0.124 4.124 6 C -0.160 4.160 7 C -0.121 4.121 8 C -0.192 4.192 9 C 0.095 3.905 10 N -0.371 5.371 11 C 0.000 4.000 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.239 0.761 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.035 15.256 0.000 25.183 hybrid contribution 0.636 -0.294 0.006 0.701 sum -19.399 14.962 0.006 24.499 Atomic orbital electron populations 1.22946 0.78797 1.03531 1.00908 1.85990 1.20937 1.26667 1.89955 1.18433 0.90394 0.84735 1.06354 1.20789 0.99147 0.91398 1.06721 1.19385 0.93820 0.94195 1.04958 1.20644 0.98929 0.94758 1.01693 1.20678 0.92885 0.97685 1.00852 1.20530 1.00008 0.90111 1.08577 1.17276 0.87084 0.88154 0.97991 1.44775 1.05265 1.05426 1.81593 1.21499 0.78730 0.99075 1.00649 1.21849 0.98286 0.94323 1.02197 1.21555 0.91046 1.01394 1.00465 1.19090 0.95174 0.90145 0.97192 1.21239 0.91835 0.92335 1.50555 0.92737 1.25036 0.98618 0.95505 0.95370 1.69960 1.35470 0.97278 1.50880 0.86657 0.85721 0.76996 0.78615 1.20239 1.21305 1.20242 0.93051 0.88555 0.93047 0.85927 0.91859 0.91891 0.92266 0.86235 0.85297 0.76117 0.92530 0.92522 0.91904 0.91901 0.93198 0.93204 0.96645 0.96649 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -3.94 9.74 -19.77 -0.19 -4.14 16 3 C 0.05 0.63 6.70 -39.08 -0.26 0.37 16 4 C -0.16 -1.79 8.69 -39.47 -0.34 -2.14 16 5 C -0.12 -1.29 5.88 -104.60 -0.62 -1.91 16 6 C -0.10 -0.80 10.01 36.01 0.36 -0.44 16 7 C -0.10 -1.14 9.69 -39.58 -0.38 -1.52 16 8 C -0.17 -2.14 9.31 -39.40 -0.37 -2.51 16 9 C 0.20 2.76 6.67 -83.56 -0.56 2.20 16 10 N -0.74 -10.42 5.73 -58.49 -0.34 -10.75 16 11 C 0.12 1.78 4.92 -4.04 -0.02 1.76 16 12 C -0.13 -2.15 5.33 -26.73 -0.14 -2.29 16 13 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 14 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.13 1.53 6.74 -52.49 -0.35 1.18 16 32 H 0.40 5.62 7.84 -40.82 -0.32 5.30 16 33 H 0.06 0.80 7.94 -51.93 -0.41 0.38 16 34 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.41 338.84 -8.54 -39.95 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.81 Total: 0.38 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.03 Total: -20.83 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.40 Total: -37.30 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.41 -8.54 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385771117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.375 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds