Wall clock time and date at job start Mon Mar 30 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 116.99906 * 2 1 4 4 C 1.38501 * 120.08234 * 0.02947 * 3 2 1 5 5 C 1.38285 * 120.01514 * 179.97438 * 4 3 2 6 6 C 1.50708 * 119.90648 * 179.97438 * 5 4 3 7 7 C 1.38247 * 120.18332 * 359.97438 * 5 4 3 8 8 C 1.38222 * 120.16321 * 359.67855 * 7 5 4 9 9 C 1.38732 * 119.97530 * 0.62035 * 8 7 5 10 10 N 1.39963 * 120.09229 * 179.67851 * 9 8 7 11 11 C 1.46504 * 119.99503 * 359.72225 * 10 9 8 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47188 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00218 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00270 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46778 * 60.00425 * 19 17 15 21 21 H 1.48496 * 109.47592 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47134 * 300.00732 * 19 17 15 23 23 H 1.09000 * 109.47379 * 59.99524 * 1 2 3 24 24 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46961 * 299.99471 * 1 2 3 26 26 H 1.07994 * 119.99347 * 359.97152 * 4 3 2 27 27 H 1.09002 * 109.46753 * 89.99994 * 6 5 4 28 28 H 1.09000 * 109.47134 * 209.99802 * 6 5 4 29 29 H 1.08999 * 109.47111 * 330.00384 * 6 5 4 30 30 H 1.08008 * 119.92082 * 179.97438 * 7 5 4 31 31 H 1.07994 * 120.01676 * 180.30077 * 8 7 5 32 32 H 0.96992 * 120.00531 * 179.72589 * 10 9 8 33 33 H 1.09001 * 109.46891 * 60.00379 * 11 10 9 34 34 H 1.08993 * 109.47378 * 299.99751 * 11 10 9 35 35 H 1.09001 * 109.46801 * 300.00349 * 12 11 10 36 36 H 1.09001 * 109.46998 * 59.99945 * 12 11 10 37 37 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 38 38 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 39 39 H 1.09000 * 109.47380 * 300.00763 * 14 13 12 40 40 H 1.09001 * 109.46997 * 60.00426 * 14 13 12 41 41 H 0.97007 * 119.99867 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 0.0006 5 6 1.9230 3.6059 0.0012 6 6 1.1016 4.8695 0.0012 7 6 3.3035 3.6811 0.0016 8 6 4.0619 2.5256 0.0082 9 6 3.4377 1.2866 0.0014 10 7 4.2034 0.1150 0.0013 11 6 5.6662 0.1960 0.0023 12 6 6.2551 -1.2161 0.0026 13 6 7.7828 -1.1316 0.0042 14 6 8.3717 -2.5436 0.0051 15 6 9.8764 -2.4604 0.0061 16 1 10.3639 -1.4967 0.0064 17 6 10.6307 -3.6145 0.0076 18 7 10.0370 -4.7881 0.0077 19 14 12.4958 -3.5113 0.0095 20 1 12.9501 -2.7844 1.2221 21 1 13.0675 -4.8819 0.0103 22 1 12.9527 -2.7856 -1.2029 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2153 2.3194 0.0006 27 1 0.9033 5.1738 1.0290 28 1 1.6499 5.6593 -0.5122 29 1 0.1576 4.6891 -0.5129 30 1 3.7905 4.6451 0.0016 31 1 5.1401 2.5871 0.0135 32 1 3.7656 -0.7505 0.0006 33 1 6.0000 0.7287 0.8928 34 1 6.0011 0.7295 -0.8872 35 1 5.9201 -1.7493 0.8923 36 1 5.9213 -1.7492 -0.8877 37 1 8.1180 -0.5982 -0.8853 38 1 8.1162 -0.5987 0.8947 39 1 8.0363 -3.0766 0.8948 40 1 8.0383 -3.0769 -0.8851 41 1 10.5678 -5.6001 0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385771117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:36 Heat of formation + Delta-G solvation = -57.470298 kcal Electronic energy + Delta-G solvation = -18795.032454 eV Core-core repulsion = 15866.292727 eV Total energy + Delta-G solvation = -2928.739727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16338 -38.61470 -37.64416 -35.96409 -34.28290 -32.20044 -31.06942 -29.95144 -28.47772 -26.97512 -25.74752 -23.97624 -22.64346 -21.80535 -21.76325 -18.78634 -18.38362 -17.83657 -17.06905 -16.73984 -16.51535 -16.44637 -15.61592 -15.12852 -14.92288 -14.80150 -14.47925 -14.43643 -14.31802 -13.67259 -13.35043 -13.14719 -12.93788 -12.85676 -12.79567 -12.40786 -12.38934 -12.30725 -12.11825 -11.81506 -11.78615 -11.44410 -11.33384 -11.07691 -10.70840 -10.55054 -9.42613 -8.20190 -8.00722 -6.31623 0.50876 0.67188 1.39808 1.43203 1.51086 2.36069 2.41414 2.63303 2.91559 3.12781 3.91822 4.00613 4.07239 4.10188 4.27029 4.37879 4.42103 4.43321 4.45925 4.64705 4.67631 4.73933 4.78244 4.82463 4.85798 4.93761 4.96142 5.17495 5.18009 5.26203 5.27161 5.33205 5.45288 5.53269 5.76153 5.79739 5.86052 5.96254 6.19563 6.25020 6.63615 6.85742 6.88058 7.37781 8.91597 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.002861 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.152650 B = 9783.481293 C =10521.977079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.036 3.964 4 C -0.166 4.166 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.111 4.111 8 C -0.179 4.179 9 C 0.169 3.831 10 N -0.747 5.747 11 C 0.139 3.861 12 C -0.117 4.117 13 C -0.094 4.094 14 C 0.022 3.978 15 C -0.545 4.545 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.266 1.266 23 H 0.062 0.938 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.145 0.855 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.401 0.599 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.056 0.944 39 H -0.010 1.010 40 H -0.011 1.011 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.804 17.709 -0.005 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C -0.012 4.012 4 C -0.185 4.185 5 C -0.123 4.123 6 C -0.159 4.159 7 C -0.129 4.129 8 C -0.202 4.202 9 C 0.066 3.934 10 N -0.378 5.378 11 C 0.014 3.986 12 C -0.155 4.155 13 C -0.132 4.132 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.236 0.764 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.493 17.376 -0.006 26.868 hybrid contribution 0.655 -0.926 0.009 1.134 sum -19.838 16.450 0.003 25.771 Atomic orbital electron populations 1.23213 0.76839 1.04982 1.01899 1.85962 1.23076 1.26743 1.90001 1.18660 0.90424 0.85593 1.06479 1.21096 1.00271 0.91011 1.06122 1.19824 0.94064 0.95299 1.03137 1.20703 0.99075 0.93465 1.02661 1.20983 0.93355 0.98080 1.00511 1.20721 1.00416 0.90379 1.08650 1.17547 0.87795 0.88238 0.99775 1.44641 1.04849 1.05662 1.82679 1.21244 0.79224 0.97010 1.01077 1.21644 0.95886 0.96114 1.01822 1.21344 0.93198 0.97641 1.01028 1.19022 0.94716 0.93083 0.94663 1.21722 0.93265 0.92844 1.50473 0.91984 1.26029 1.04278 0.95042 0.94748 1.70103 1.37614 0.98106 1.51754 0.85485 0.78932 0.77277 0.79267 1.19063 1.20885 1.19070 0.91989 0.87035 0.91992 0.83787 0.90857 0.90840 0.91106 0.84181 0.85088 0.76422 0.92096 0.92088 0.92329 0.92323 0.92559 0.92566 0.99205 0.99211 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -8.28 9.74 -93.67 -0.91 -9.19 16 3 C 0.04 0.92 6.70 22.59 0.15 1.07 16 4 C -0.17 -3.41 8.69 22.34 0.19 -3.21 16 5 C -0.12 -2.32 5.88 -19.85 -0.12 -2.44 16 6 C -0.10 -1.27 10.01 71.24 0.71 -0.56 16 7 C -0.11 -2.28 9.69 22.27 0.22 -2.07 16 8 C -0.18 -4.39 9.31 22.38 0.21 -4.18 16 9 C 0.17 4.65 6.67 38.22 0.25 4.90 16 10 N -0.75 -21.15 5.73 -338.95 -1.94 -23.09 16 11 C 0.14 3.94 4.92 86.38 0.42 4.36 16 12 C -0.12 -3.95 5.33 30.60 0.16 -3.79 16 13 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 18 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 19 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 26 H 0.14 2.20 6.30 -2.91 -0.02 2.19 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 29 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.13 3.03 6.74 -2.91 -0.02 3.01 16 32 H 0.40 11.43 7.84 -92.71 -0.73 10.71 16 33 H 0.06 1.67 7.94 -2.39 -0.02 1.65 16 34 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -67.96 338.84 4.05 -63.91 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.27 Total: 17.17 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 4.32 Total: -37.81 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.66 Total: -80.84 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.91 Total: -9.19 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.96 4.05 -63.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385771117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.439 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds