Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47234 * 2 1 4 4 C 1.38256 * 119.91679 * 270.01910 * 3 2 1 5 5 C 1.38283 * 120.18435 * 179.74745 * 4 3 2 6 6 C 1.38511 * 120.01180 * 0.50998 * 5 4 3 7 7 O 1.36011 * 120.07873 * 179.74552 * 6 5 4 8 8 C 1.42895 * 116.99925 * 359.72585 * 7 6 5 9 9 C 1.53006 * 109.47036 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00218 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99966 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99899 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47276 * 59.99363 * 16 14 12 18 18 H 1.48496 * 109.47302 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47261 * 299.99694 * 16 14 12 20 20 C 1.39317 * 119.83991 * 359.46642 * 6 5 4 21 21 N 1.39962 * 120.08762 * 180.30041 * 20 6 5 22 22 C 1.38211 * 119.92284 * 89.99809 * 3 2 1 23 23 H 1.09001 * 109.47253 * 300.00451 * 1 2 3 24 24 H 1.09001 * 109.46713 * 60.00448 * 1 2 3 25 25 H 1.09001 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47253 * 239.99549 * 2 1 3 27 27 H 1.09003 * 109.46492 * 120.00043 * 2 1 3 28 28 H 1.08004 * 119.91230 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.99633 * 180.25136 * 5 4 3 30 30 H 1.09001 * 109.47626 * 60.00362 * 8 7 6 31 31 H 1.09001 * 109.47255 * 300.00103 * 8 7 6 32 32 H 1.09001 * 109.47002 * 299.99477 * 9 8 7 33 33 H 1.08993 * 109.46955 * 59.99914 * 9 8 7 34 34 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 35 35 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 37 37 H 1.08992 * 109.47534 * 59.99520 * 11 10 9 38 38 H 0.97007 * 119.99787 * 180.02562 * 15 14 12 39 39 H 0.97001 * 120.00501 * 0.02562 * 21 20 6 40 40 H 0.97002 * 119.99925 * 180.02562 * 21 20 6 41 41 H 1.08005 * 120.01221 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0710 -1.1983 5 6 2.7178 3.3765 -1.2048 6 6 2.9561 4.0330 -0.0087 7 8 3.4096 5.3153 -0.0135 8 6 3.6243 5.9227 -1.2890 9 6 4.1309 7.3532 -1.0938 10 6 4.3614 8.0033 -2.4595 11 6 4.8686 9.4336 -2.2644 12 6 5.0951 10.0741 -3.6095 13 1 4.8975 9.5168 -4.5132 14 6 5.5555 11.3715 -3.6865 15 7 5.7966 12.0501 -2.5861 16 14 5.8370 12.1653 -5.3539 17 1 4.5599 12.1922 -6.1112 18 1 6.3291 13.5535 -5.1645 19 1 6.8452 11.3812 -6.1115 20 6 2.7246 3.3787 1.1993 21 7 2.9576 4.0394 2.4110 22 6 2.2622 2.0708 1.1979 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 2.0802 1.5595 -2.1321 29 1 2.8922 3.8828 -2.1426 30 1 2.6870 5.9415 -1.8450 31 1 4.3651 5.3480 -1.8450 32 1 3.3904 7.9282 -0.5378 33 1 5.0683 7.3340 -0.5381 34 1 5.1021 7.4283 -3.0153 35 1 3.4242 8.0224 -3.0157 36 1 4.1282 10.0089 -1.7085 37 1 5.8058 9.4141 -1.7084 38 1 6.1202 12.9630 -2.6403 39 1 3.2804 4.9541 2.4105 40 1 2.7964 3.5825 3.2514 41 1 2.0821 1.5605 2.1326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385847978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = -50.790004 kcal Electronic energy + Delta-G solvation = -18722.636017 eV Core-core repulsion = 15794.185970 eV Total energy + Delta-G solvation = -2928.450048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21556 -37.87717 -35.26879 -34.57904 -33.04273 -32.35738 -29.45531 -29.12618 -27.81819 -25.20471 -23.68164 -22.90945 -21.39059 -20.69094 -20.11659 -17.89846 -17.10314 -16.37568 -16.17345 -16.02030 -15.06694 -14.57320 -14.51952 -14.39540 -14.14427 -13.70500 -13.43186 -13.08422 -12.74472 -12.47588 -12.26123 -11.87673 -11.62621 -11.49496 -11.23372 -11.13391 -10.94048 -10.88556 -10.58108 -10.52352 -10.42747 -10.33918 -9.69879 -9.35438 -9.08395 -8.44916 -8.34546 -7.25227 -5.99641 -4.02244 1.38509 1.56922 3.33455 3.33809 3.37851 3.40667 3.79410 3.86811 4.46197 4.65672 4.75050 4.99222 5.12188 5.18056 5.25501 5.31780 5.35536 5.36077 5.43978 5.54027 5.64046 5.65338 5.70133 5.91653 5.98785 6.02276 6.08144 6.11200 6.34334 6.43104 6.64515 6.71408 6.78664 6.86000 7.07954 7.25852 7.67373 7.70885 7.77530 7.81723 8.00302 8.42359 9.04659 9.61673 11.11683 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041342 B = 0.002745 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.119556 B =10197.653795 C =10754.960768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.077 4.077 4 C -0.138 4.138 5 C -0.161 4.161 6 C 0.058 3.942 7 O -0.321 6.321 8 C 0.064 3.936 9 C -0.116 4.116 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.193 3.807 21 N -0.876 5.876 22 C -0.169 4.169 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.404 0.596 40 H 0.395 0.605 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 -22.826 7.997 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.078 4.078 4 C -0.158 4.158 5 C -0.181 4.181 6 C 0.010 3.990 7 O -0.236 6.236 8 C -0.010 4.010 9 C -0.154 4.154 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.089 3.911 21 N -0.416 5.416 22 C -0.192 4.192 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.233 0.767 40 H 0.222 0.778 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.463 -22.523 8.170 25.410 hybrid contribution 0.253 0.715 -0.823 1.119 sum -8.210 -21.808 7.346 24.433 Atomic orbital electron populations 1.21750 0.94992 1.01342 1.02280 1.20459 0.95947 0.92821 1.02456 1.19456 0.99907 0.95951 0.92479 1.20554 1.03484 0.94415 0.97335 1.21079 1.04092 0.96206 0.96715 1.18512 1.02305 0.85540 0.92684 1.85978 1.81059 1.23608 1.32940 1.22988 1.00075 0.94900 0.83068 1.21680 1.01565 0.91573 1.00548 1.21579 1.00349 0.99318 0.93218 1.19079 0.96314 0.89059 0.97057 1.21222 1.44091 0.98012 0.92725 0.92740 1.25034 0.95593 0.97394 0.96493 1.69955 1.45720 1.10776 1.27029 0.86649 0.78579 0.78349 0.84364 1.20242 1.21287 1.20237 1.17131 0.97721 0.91596 0.84643 1.42310 1.77248 1.17838 1.04245 1.20207 1.07923 0.92954 0.98142 0.92649 0.92514 0.92707 0.91231 0.91415 0.86408 0.85394 0.92444 0.92441 0.91459 0.91460 0.93163 0.93161 0.96513 0.96507 0.92937 0.76660 0.77757 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.08 -0.81 5.13 -104.63 -0.54 -1.34 16 4 C -0.14 -1.55 9.69 -39.56 -0.38 -1.93 16 5 C -0.16 -2.06 9.04 -39.46 -0.36 -2.42 16 6 C 0.06 0.82 6.70 -39.08 -0.26 0.55 16 7 O -0.32 -4.88 9.38 -19.78 -0.19 -5.07 16 8 C 0.06 0.96 4.74 37.16 0.18 1.14 16 9 C -0.12 -2.00 5.58 -26.73 -0.15 -2.15 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.31 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.19 2.39 6.77 -83.56 -0.57 1.83 16 21 N -0.88 -8.95 9.09 32.51 0.30 -8.65 16 22 C -0.17 -1.82 9.54 -39.41 -0.38 -2.19 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 30 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 31 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.40 4.29 8.19 -40.82 -0.33 3.96 16 40 H 0.39 2.95 8.85 -40.82 -0.36 2.59 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -31.12 340.75 -8.84 -39.96 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.85 Total: 1.87 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.94 Total: -23.57 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.03 Total: -35.07 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.19 Total: -5.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.12 -8.84 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385847978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.834 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds