Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47234 * 2 1 4 4 C 1.38256 * 119.91679 * 270.01910 * 3 2 1 5 5 C 1.38283 * 120.18435 * 179.74745 * 4 3 2 6 6 C 1.38511 * 120.01180 * 0.50998 * 5 4 3 7 7 O 1.36011 * 120.07873 * 179.74552 * 6 5 4 8 8 C 1.42895 * 116.99925 * 359.72585 * 7 6 5 9 9 C 1.53006 * 109.47036 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00218 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99966 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99899 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47276 * 59.99363 * 16 14 12 18 18 H 1.48496 * 109.47302 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47261 * 299.99694 * 16 14 12 20 20 C 1.39317 * 119.83991 * 359.46642 * 6 5 4 21 21 N 1.39962 * 120.08762 * 180.30041 * 20 6 5 22 22 C 1.38211 * 119.92284 * 89.99809 * 3 2 1 23 23 H 1.09001 * 109.47253 * 300.00451 * 1 2 3 24 24 H 1.09001 * 109.46713 * 60.00448 * 1 2 3 25 25 H 1.09001 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47253 * 239.99549 * 2 1 3 27 27 H 1.09003 * 109.46492 * 120.00043 * 2 1 3 28 28 H 1.08004 * 119.91230 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.99633 * 180.25136 * 5 4 3 30 30 H 1.09001 * 109.47626 * 60.00362 * 8 7 6 31 31 H 1.09001 * 109.47255 * 300.00103 * 8 7 6 32 32 H 1.09001 * 109.47002 * 299.99477 * 9 8 7 33 33 H 1.08993 * 109.46955 * 59.99914 * 9 8 7 34 34 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 35 35 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 37 37 H 1.08992 * 109.47534 * 59.99520 * 11 10 9 38 38 H 0.97007 * 119.99787 * 180.02562 * 15 14 12 39 39 H 0.97001 * 120.00501 * 0.02562 * 21 20 6 40 40 H 0.97002 * 119.99925 * 180.02562 * 21 20 6 41 41 H 1.08005 * 120.01221 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0710 -1.1983 5 6 2.7178 3.3765 -1.2048 6 6 2.9561 4.0330 -0.0087 7 8 3.4096 5.3153 -0.0135 8 6 3.6243 5.9227 -1.2890 9 6 4.1309 7.3532 -1.0938 10 6 4.3614 8.0033 -2.4595 11 6 4.8686 9.4336 -2.2644 12 6 5.0951 10.0741 -3.6095 13 1 4.8975 9.5168 -4.5132 14 6 5.5555 11.3715 -3.6865 15 7 5.7966 12.0501 -2.5861 16 14 5.8370 12.1653 -5.3539 17 1 4.5599 12.1922 -6.1112 18 1 6.3291 13.5535 -5.1645 19 1 6.8452 11.3812 -6.1115 20 6 2.7246 3.3787 1.1993 21 7 2.9576 4.0394 2.4110 22 6 2.2622 2.0708 1.1979 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 2.0802 1.5595 -2.1321 29 1 2.8922 3.8828 -2.1426 30 1 2.6870 5.9415 -1.8450 31 1 4.3651 5.3480 -1.8450 32 1 3.3904 7.9282 -0.5378 33 1 5.0683 7.3340 -0.5381 34 1 5.1021 7.4283 -3.0153 35 1 3.4242 8.0224 -3.0157 36 1 4.1282 10.0089 -1.7085 37 1 5.8058 9.4141 -1.7084 38 1 6.1202 12.9630 -2.6403 39 1 3.2804 4.9541 2.4105 40 1 2.7964 3.5825 3.2514 41 1 2.0821 1.5605 2.1326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385847978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = -68.347816 kcal Electronic energy + Delta-G solvation = -18723.397381 eV Core-core repulsion = 15794.185970 eV Total energy + Delta-G solvation = -2929.211412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16056 -38.87582 -36.58159 -35.84137 -34.39764 -33.74157 -30.86572 -30.18727 -28.81231 -26.88569 -24.63082 -24.09309 -22.71784 -21.75503 -21.51885 -18.93984 -18.44378 -17.94183 -17.24718 -17.18396 -16.52919 -15.92069 -15.61351 -15.31635 -15.22850 -14.72421 -14.37563 -14.31863 -14.00970 -13.71393 -13.65641 -13.21092 -12.99375 -12.85155 -12.60521 -12.43834 -12.36993 -11.91865 -11.82820 -11.74540 -11.62421 -11.38886 -11.35783 -11.30318 -11.14509 -10.55592 -9.32900 -8.20486 -8.14738 -6.31998 0.49191 0.68628 1.39949 1.43281 1.51191 2.25710 2.41999 2.91111 3.06255 3.12550 3.87107 3.94726 3.97822 4.09626 4.26384 4.33741 4.37102 4.52070 4.53652 4.56725 4.62133 4.74721 4.80060 4.85531 4.95623 5.10078 5.13297 5.20227 5.22460 5.24115 5.27483 5.45091 5.50110 5.51724 5.73553 5.82219 5.84686 5.95916 6.23466 6.32164 6.74924 6.85147 7.03783 7.37313 8.91325 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041342 B = 0.002745 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.119556 B =10197.653795 C =10754.960768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.074 4.074 4 C -0.148 4.148 5 C -0.169 4.169 6 C 0.022 3.978 7 O -0.335 6.335 8 C 0.074 3.926 9 C -0.107 4.107 10 C -0.094 4.094 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.062 0.938 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.182 3.818 21 N -0.871 5.871 22 C -0.172 4.172 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.058 0.942 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.402 0.598 40 H 0.407 0.593 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 -24.759 7.164 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.075 4.075 4 C -0.168 4.168 5 C -0.189 4.189 6 C -0.026 4.026 7 O -0.250 6.250 8 C -0.001 4.001 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.191 1.191 20 C 0.077 3.923 21 N -0.412 5.412 22 C -0.195 4.195 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.230 0.770 40 H 0.237 0.763 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.126 -24.485 7.354 27.146 hybrid contribution 0.428 1.243 -0.490 1.403 sum -8.698 -23.243 6.863 25.748 Atomic orbital electron populations 1.21735 0.94425 1.02270 1.01772 1.20524 0.96309 0.91143 1.03582 1.19844 0.98423 0.97149 0.92066 1.20824 1.03384 0.94027 0.98573 1.21243 1.04172 0.96955 0.96512 1.18795 1.04562 0.85290 0.93915 1.85910 1.81812 1.24667 1.32632 1.22746 1.00630 0.93256 0.83448 1.21459 1.01279 0.93229 0.98477 1.21345 1.00568 0.96040 0.95181 1.19007 0.94524 0.92275 0.95636 1.21699 1.44085 0.98688 0.93853 0.91934 1.26031 0.95153 0.98129 1.00787 1.70097 1.46544 1.11212 1.29616 0.85475 0.79005 0.77248 0.79168 1.19076 1.20893 1.19066 1.17401 0.97778 0.92291 0.84802 1.42307 1.76840 1.17717 1.04384 1.20519 1.07236 0.92391 0.99363 0.93031 0.93173 0.91097 0.90295 0.90164 0.84705 0.85113 0.91575 0.91570 0.92076 0.92074 0.92362 0.92360 0.99068 0.99058 0.92763 0.77019 0.76280 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.00 16 2 C -0.08 -1.01 6.06 29.85 0.18 -0.83 16 3 C -0.07 -1.40 5.13 -19.87 -0.10 -1.50 16 4 C -0.15 -3.10 9.69 22.28 0.22 -2.88 16 5 C -0.17 -4.20 9.04 22.35 0.20 -4.00 16 6 C 0.02 0.62 6.70 22.59 0.15 0.77 16 7 O -0.34 -10.18 9.38 -93.68 -0.88 -11.06 16 8 C 0.07 2.17 4.74 71.98 0.34 2.52 16 9 C -0.11 -3.73 5.58 30.60 0.17 -3.56 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 11 C 0.02 1.21 4.97 29.85 0.15 1.36 16 12 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 15 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 16 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.18 4.35 6.77 38.22 0.26 4.61 16 21 N -0.87 -17.19 9.09 -51.05 -0.46 -17.66 16 22 C -0.17 -3.39 9.54 22.38 0.21 -3.18 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.13 3.02 6.30 -2.91 -0.02 3.00 16 30 H 0.07 1.81 7.65 -2.39 -0.02 1.79 16 31 H 0.07 1.81 7.68 -2.39 -0.02 1.79 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.40 8.48 8.19 -92.71 -0.76 7.73 16 40 H 0.41 5.61 8.85 -92.71 -0.82 4.79 16 41 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -67.02 340.75 3.75 -63.28 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.57 Total: 18.58 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 3.35 Total: -42.25 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -0.18 Total: -75.11 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.88 Total: -11.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.02 3.75 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385847978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.070 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds