Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38293 * 119.94570 * 2 1 4 4 C 1.38117 * 120.05867 * 179.70055 * 3 2 1 5 5 C 1.38755 * 119.94421 * 0.59130 * 4 3 2 6 6 O 1.35900 * 120.05767 * 179.69621 * 5 4 3 7 7 C 1.42895 * 116.99858 * 359.73712 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47276 * 59.99363 * 15 13 11 17 17 H 1.48496 * 109.47302 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47261 * 299.99694 * 15 13 11 19 19 C 1.38713 * 119.88619 * 359.43561 * 5 4 3 20 20 C 1.50697 * 120.02574 * 180.29440 * 19 5 4 21 21 N 1.46898 * 109.47263 * 79.99984 * 20 19 5 22 22 C 1.38164 * 119.94137 * 0.26753 * 19 5 4 23 23 H 1.08995 * 109.47373 * 269.97712 * 1 2 3 24 24 H 1.09004 * 109.47233 * 29.98414 * 1 2 3 25 25 H 1.08999 * 109.47062 * 149.97668 * 1 2 3 26 26 H 1.08000 * 119.96747 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.02807 * 180.32283 * 4 3 2 28 28 H 1.09001 * 109.47626 * 59.99849 * 7 6 5 29 29 H 1.09001 * 109.47255 * 299.99590 * 7 6 5 30 30 H 1.09001 * 109.47002 * 299.99477 * 8 7 6 31 31 H 1.08993 * 109.46955 * 59.99914 * 8 7 6 32 32 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 33 33 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.08992 * 109.47534 * 59.99520 * 10 9 8 36 36 H 0.97007 * 119.99787 * 180.02562 * 14 13 11 37 37 H 1.09009 * 109.46987 * 199.99297 * 20 19 5 38 38 H 1.09000 * 109.47447 * 319.99303 * 20 19 5 39 39 H 1.00905 * 111.00124 * 179.97438 * 21 20 19 40 40 H 1.00901 * 110.99649 * 303.95020 * 21 20 19 41 41 H 1.08001 * 119.96981 * 179.97438 * 22 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 0.0062 5 6 4.2734 0.0001 0.0001 6 8 5.6324 0.0002 0.0000 7 6 6.2811 1.2734 0.0006 8 6 7.7980 1.0730 0.0010 9 6 8.4925 2.4362 0.0009 10 6 10.0093 2.2358 0.0007 11 6 10.6934 3.5786 0.0013 12 1 10.1052 4.4843 0.0013 13 6 12.0704 3.6507 0.0007 14 7 12.7866 2.5479 0.0001 15 14 12.9183 5.3152 0.0006 16 1 12.5197 6.0738 1.2134 17 1 14.3905 5.1207 0.0006 18 1 12.5188 6.0743 -1.2115 19 6 3.5787 -1.2005 -0.0004 20 6 4.3304 -2.5066 -0.0004 21 7 4.7825 -2.8114 1.3637 22 6 2.1971 -1.1978 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6558 2.1328 0.0004 27 1 4.1170 2.1372 0.0115 28 1 5.9883 1.8301 0.8908 29 1 5.9882 1.8308 -0.8892 30 1 8.0906 0.5158 0.8910 31 1 8.0911 0.5162 -0.8890 32 1 8.1999 2.9931 -0.8892 33 1 8.1993 2.9934 0.8907 34 1 10.3023 1.6788 0.8907 35 1 10.3021 1.6788 -0.8892 36 1 13.7553 2.5987 0.0000 37 1 3.6747 -3.3032 -0.3522 38 1 5.1941 -2.4289 -0.6606 39 1 5.2893 -3.6835 1.3903 40 1 5.3397 -2.0575 1.7368 41 1 1.6557 -2.1323 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385875440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -48.423645 kcal Electronic energy + Delta-G solvation = -18926.359895 eV Core-core repulsion = 15998.012460 eV Total energy + Delta-G solvation = -2928.347435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36897 -37.88390 -35.18050 -34.69801 -32.53860 -31.74534 -30.75533 -29.01322 -26.50617 -25.06023 -25.01679 -22.79834 -21.16022 -20.68010 -20.06562 -17.92097 -16.49613 -16.29576 -16.14711 -15.83838 -14.89542 -14.55371 -14.49387 -14.39719 -14.02586 -13.68736 -13.63440 -13.37272 -12.57463 -12.43439 -12.26910 -12.10687 -11.84253 -11.61556 -11.49563 -11.34454 -10.89143 -10.85789 -10.60072 -10.46300 -10.42359 -9.74411 -9.39135 -9.11506 -9.07179 -8.73238 -8.37045 -8.03843 -6.02063 -4.04861 1.21715 1.34108 3.25496 3.31660 3.36216 3.38687 3.59772 4.44081 4.55466 4.65609 4.74618 4.83532 5.05154 5.14821 5.16469 5.20900 5.26881 5.33704 5.41848 5.43642 5.52457 5.59647 5.61229 5.74536 5.94781 5.95438 6.04932 6.23036 6.30650 6.36978 6.49689 6.65771 6.73156 6.80790 7.00356 7.04787 7.33528 7.47195 7.64260 7.78136 7.97521 8.39434 9.01992 9.59265 11.09273 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003021 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.984870 B = 9266.479005 C = 9994.712413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C -0.080 4.080 4 C -0.206 4.206 5 C 0.137 3.863 6 O -0.316 6.316 7 C 0.060 3.940 8 C -0.116 4.116 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.116 4.116 20 C 0.111 3.889 21 N -0.846 5.846 22 C -0.066 4.066 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.340 0.660 40 H 0.346 0.654 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.409 -7.670 -0.222 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C -0.098 4.098 4 C -0.225 4.225 5 C 0.090 3.910 6 O -0.229 6.229 7 C -0.015 4.015 8 C -0.153 4.153 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.118 4.118 20 C -0.019 4.019 21 N -0.376 5.376 22 C -0.085 4.085 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.843 -7.917 -0.048 24.176 hybrid contribution 1.517 1.307 -0.407 2.043 sum -21.326 -6.610 -0.455 22.332 Atomic orbital electron populations 1.20683 0.91222 1.02399 1.02008 1.19766 0.96067 0.92991 1.04514 1.20812 0.93299 0.97591 0.98125 1.21284 0.95329 0.97296 1.08546 1.18919 0.82936 0.93533 0.95598 1.86057 1.15629 1.33275 1.87981 1.23080 0.94294 0.83013 1.01066 1.21688 0.89932 1.00662 1.03067 1.21583 0.99196 0.93161 1.00526 1.19076 0.87944 0.97088 0.97366 1.21216 0.91386 0.92704 1.50837 0.92739 1.25030 0.97655 0.96491 0.95291 1.69952 1.05895 1.26939 1.50675 0.86650 0.78365 0.84314 0.78621 1.20226 1.21256 1.20234 1.19117 0.93295 0.92711 1.06637 1.20465 0.97719 0.93434 0.90287 1.58822 1.49171 1.08178 1.21413 1.20690 0.92242 0.97634 0.97890 0.91570 0.91873 0.91834 0.86015 0.85264 0.92163 0.92236 0.91383 0.91434 0.93156 0.93121 0.96497 0.96513 0.92904 0.90684 0.94114 0.84749 0.84069 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.13 -1.37 5.88 -104.61 -0.62 -1.99 16 3 C -0.08 -0.86 9.69 -39.61 -0.38 -1.25 16 4 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 5 C 0.14 1.85 6.66 -39.21 -0.26 1.58 16 6 O -0.32 -4.58 9.32 -19.43 -0.18 -4.77 16 7 C 0.06 0.86 4.74 37.16 0.18 1.03 16 8 C -0.12 -1.94 5.58 -26.73 -0.15 -2.09 16 9 C -0.11 -2.14 5.15 -26.73 -0.14 -2.27 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.12 -1.44 5.41 -104.47 -0.56 -2.01 16 20 C 0.11 1.24 6.58 -4.98 -0.03 1.21 16 21 N -0.85 -9.26 9.61 -11.41 -0.11 -9.37 16 22 C -0.07 -0.72 9.32 -39.61 -0.37 -1.09 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 28 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 29 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 0.72 8.00 -51.92 -0.42 0.30 16 38 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 39 H 0.34 3.04 9.08 -39.29 -0.36 2.68 16 40 H 0.35 4.12 8.93 -39.29 -0.35 3.77 16 41 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -30.73 341.48 -9.15 -39.89 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.84 Total: 2.10 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.88 Total: -23.35 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.63 Total: -35.64 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.18 Total: -4.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.73 -9.15 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.536 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds