Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38293 * 119.94570 * 2 1 4 4 C 1.38117 * 120.05867 * 179.70055 * 3 2 1 5 5 C 1.38755 * 119.94421 * 0.59130 * 4 3 2 6 6 O 1.35900 * 120.05767 * 179.69621 * 5 4 3 7 7 C 1.42895 * 116.99858 * 359.73712 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47276 * 59.99363 * 15 13 11 17 17 H 1.48496 * 109.47302 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47261 * 299.99694 * 15 13 11 19 19 C 1.38713 * 119.88619 * 359.43561 * 5 4 3 20 20 C 1.50697 * 120.02574 * 180.29440 * 19 5 4 21 21 N 1.46898 * 109.47263 * 79.99984 * 20 19 5 22 22 C 1.38164 * 119.94137 * 0.26753 * 19 5 4 23 23 H 1.08995 * 109.47373 * 269.97712 * 1 2 3 24 24 H 1.09004 * 109.47233 * 29.98414 * 1 2 3 25 25 H 1.08999 * 109.47062 * 149.97668 * 1 2 3 26 26 H 1.08000 * 119.96747 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.02807 * 180.32283 * 4 3 2 28 28 H 1.09001 * 109.47626 * 59.99849 * 7 6 5 29 29 H 1.09001 * 109.47255 * 299.99590 * 7 6 5 30 30 H 1.09001 * 109.47002 * 299.99477 * 8 7 6 31 31 H 1.08993 * 109.46955 * 59.99914 * 8 7 6 32 32 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 33 33 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.08992 * 109.47534 * 59.99520 * 10 9 8 36 36 H 0.97007 * 119.99787 * 180.02562 * 14 13 11 37 37 H 1.09009 * 109.46987 * 199.99297 * 20 19 5 38 38 H 1.09000 * 109.47447 * 319.99303 * 20 19 5 39 39 H 1.00905 * 111.00124 * 179.97438 * 21 20 19 40 40 H 1.00901 * 110.99649 * 303.95020 * 21 20 19 41 41 H 1.08001 * 119.96981 * 179.97438 * 22 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 0.0062 5 6 4.2734 0.0001 0.0001 6 8 5.6324 0.0002 0.0000 7 6 6.2811 1.2734 0.0006 8 6 7.7980 1.0730 0.0010 9 6 8.4925 2.4362 0.0009 10 6 10.0093 2.2358 0.0007 11 6 10.6934 3.5786 0.0013 12 1 10.1052 4.4843 0.0013 13 6 12.0704 3.6507 0.0007 14 7 12.7866 2.5479 0.0001 15 14 12.9183 5.3152 0.0006 16 1 12.5197 6.0738 1.2134 17 1 14.3905 5.1207 0.0006 18 1 12.5188 6.0743 -1.2115 19 6 3.5787 -1.2005 -0.0004 20 6 4.3304 -2.5066 -0.0004 21 7 4.7825 -2.8114 1.3637 22 6 2.1971 -1.1978 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6558 2.1328 0.0004 27 1 4.1170 2.1372 0.0115 28 1 5.9883 1.8301 0.8908 29 1 5.9882 1.8308 -0.8892 30 1 8.0906 0.5158 0.8910 31 1 8.0911 0.5162 -0.8890 32 1 8.1999 2.9931 -0.8892 33 1 8.1993 2.9934 0.8907 34 1 10.3023 1.6788 0.8907 35 1 10.3021 1.6788 -0.8892 36 1 13.7553 2.5987 0.0000 37 1 3.6747 -3.3032 -0.3522 38 1 5.1941 -2.4289 -0.6606 39 1 5.2893 -3.6835 1.3903 40 1 5.3397 -2.0575 1.7368 41 1 1.6557 -2.1323 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385875440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -66.687344 kcal Electronic energy + Delta-G solvation = -18927.151869 eV Core-core repulsion = 15998.012460 eV Total energy + Delta-G solvation = -2929.139408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30048 -38.86201 -36.56299 -35.88945 -34.43625 -32.64382 -31.63460 -30.67350 -27.51379 -26.57491 -25.88487 -24.22418 -22.45695 -21.85022 -21.30947 -18.92013 -18.45346 -17.38535 -17.27992 -16.84661 -16.50141 -15.85512 -15.46744 -15.35839 -15.20200 -14.79447 -14.40174 -14.33833 -14.18253 -13.74640 -13.61461 -13.26283 -12.99681 -12.83891 -12.75501 -12.45344 -12.43077 -12.31172 -12.26507 -11.68768 -11.60782 -11.38884 -11.37222 -11.16147 -10.56595 -9.93304 -9.60512 -8.93478 -8.21533 -6.33106 0.35997 0.46611 1.39368 1.42502 1.50466 2.19656 2.40891 2.74230 3.11694 3.72667 3.80698 3.91430 3.94167 3.98721 4.07836 4.26139 4.30435 4.35664 4.47076 4.50533 4.57890 4.62434 4.77151 4.80060 4.83937 4.91495 5.07185 5.11677 5.19758 5.20956 5.25522 5.39086 5.48138 5.50565 5.69218 5.72049 5.83549 5.91182 6.13218 6.22296 6.42935 6.55470 6.84200 7.36412 8.90320 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003021 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.984870 B = 9266.479005 C = 9994.712413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.087 4.087 4 C -0.216 4.216 5 C 0.109 3.891 6 O -0.329 6.329 7 C 0.070 3.930 8 C -0.107 4.107 9 C -0.094 4.094 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.063 0.937 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.129 4.129 20 C 0.112 3.888 21 N -0.848 5.848 22 C -0.073 4.073 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.059 0.941 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.350 0.650 40 H 0.340 0.660 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 -6.656 -0.207 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.105 4.105 4 C -0.235 4.235 5 C 0.063 3.937 6 O -0.243 6.243 7 C -0.005 4.005 8 C -0.144 4.144 9 C -0.131 4.131 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.130 4.130 20 C -0.018 4.018 21 N -0.378 5.378 22 C -0.091 4.091 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.162 0.838 27 H 0.152 0.848 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.045 0.955 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.926 -6.913 -0.034 25.867 hybrid contribution 2.084 0.924 -0.410 2.316 sum -22.842 -5.989 -0.443 23.618 Atomic orbital electron populations 1.20744 0.88974 1.03599 1.02872 1.20174 0.97755 0.92555 1.02742 1.21135 0.92868 0.98909 0.97594 1.21464 0.96218 0.97081 1.08718 1.19166 0.82362 0.94606 0.97560 1.86000 1.16658 1.33006 1.88655 1.22837 0.92237 0.83356 1.02037 1.21460 0.91975 0.98543 1.02462 1.21344 0.95359 0.95152 1.01269 1.19003 0.91957 0.95622 0.94839 1.21702 0.92154 0.93870 1.50647 0.91911 1.26021 0.98585 1.00716 0.94706 1.70095 1.06263 1.29517 1.51619 0.85485 0.77022 0.79194 0.79267 1.19054 1.20899 1.19069 1.19371 0.94129 0.92725 1.06805 1.20481 0.97474 0.93753 0.90066 1.58846 1.49211 1.08449 1.21273 1.20986 0.91754 0.98888 0.97476 0.90738 0.90739 0.90670 0.83837 0.84796 0.91137 0.91300 0.91938 0.92210 0.92365 0.92261 0.99041 0.99116 0.92748 0.88967 0.95536 0.83657 0.84849 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.52 16 2 C -0.13 -2.42 5.88 -19.85 -0.12 -2.53 16 3 C -0.09 -1.71 9.69 22.25 0.22 -1.49 16 4 C -0.22 -5.08 9.04 22.36 0.20 -4.88 16 5 C 0.11 2.89 6.66 22.51 0.15 3.04 16 6 O -0.33 -9.56 9.32 -92.43 -0.86 -10.43 16 7 C 0.07 1.96 4.74 71.98 0.34 2.30 16 8 C -0.11 -3.62 5.58 30.60 0.17 -3.45 16 9 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 10 C 0.02 1.21 4.97 29.85 0.15 1.36 16 11 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 12 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 14 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 15 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.13 -3.10 5.41 -19.77 -0.11 -3.20 16 20 C 0.11 2.46 6.58 85.56 0.56 3.02 16 21 N -0.85 -18.23 9.61 -190.00 -1.83 -20.06 16 22 C -0.07 -1.45 9.32 22.25 0.21 -1.24 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 25 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 26 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.13 2.89 6.30 -2.91 -0.02 2.87 16 28 H 0.07 1.82 7.65 -2.39 -0.02 1.80 16 29 H 0.07 1.79 7.67 -2.39 -0.02 1.77 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.09 1.64 8.00 -2.38 -0.02 1.62 16 38 H 0.03 0.64 7.85 -2.39 -0.02 0.63 16 39 H 0.35 6.11 9.08 -89.69 -0.81 5.29 16 40 H 0.34 8.14 8.93 -89.69 -0.80 7.33 16 41 H 0.14 2.23 8.04 -2.91 -0.02 2.20 16 Total: -1.00 -66.30 341.48 2.36 -63.94 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.60 Total: 19.28 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 3.34 Total: -41.83 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.54 Total: -77.28 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.86 Total: -10.43 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.30 2.36 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.746 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds