Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38114 * 119.99501 * 2 1 4 4 C 1.38861 * 119.98310 * 180.30224 * 3 2 1 5 5 N 1.39941 * 120.01825 * 179.74712 * 4 3 2 6 6 C 1.38859 * 119.95971 * 359.71776 * 4 3 2 7 7 C 1.38104 * 119.98413 * 0.02562 * 6 4 3 8 8 C 1.50696 * 119.99390 * 179.97438 * 7 6 4 9 9 C 1.38705 * 119.98965 * 179.76901 * 2 1 3 10 10 O 1.35995 * 119.97998 * 359.97438 * 9 2 1 11 11 C 1.42905 * 116.99762 * 269.72152 * 10 9 2 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47481 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47432 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00335 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47148 * 120.00633 * 19 17 15 22 22 H 1.48497 * 109.47025 * 240.00429 * 19 17 15 23 23 H 1.09002 * 109.47218 * 270.23587 * 1 2 3 24 24 H 1.09005 * 109.47096 * 30.23387 * 1 2 3 25 25 H 1.09001 * 109.47240 * 150.23227 * 1 2 3 26 26 H 1.08006 * 120.00300 * 0.02562 * 3 2 1 27 27 H 0.96993 * 120.00159 * 179.97438 * 5 4 3 28 28 H 0.96996 * 119.99776 * 359.97229 * 5 4 3 29 29 H 1.08001 * 120.00377 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47221 * 270.02591 * 8 7 6 31 31 H 1.09007 * 109.46909 * 30.02207 * 8 7 6 32 32 H 1.08997 * 109.47448 * 150.02490 * 8 7 6 33 33 H 1.09000 * 109.47187 * 300.00191 * 11 10 9 34 34 H 1.09001 * 109.46558 * 60.00239 * 11 10 9 35 35 H 1.09000 * 109.47486 * 300.00062 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00784 * 12 11 10 37 37 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 38 38 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 39 39 H 1.09004 * 109.46672 * 300.00239 * 14 13 12 40 40 H 1.08996 * 109.47340 * 59.99477 * 14 13 12 41 41 H 0.96996 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1962 0.0000 4 6 3.5860 1.1959 -0.0063 5 7 4.2863 2.4074 -0.0117 6 6 4.2792 -0.0073 -0.0068 7 6 3.5873 -1.2025 -0.0014 8 6 4.3394 -2.5084 -0.0024 9 6 2.2002 -1.2013 0.0048 10 8 1.5196 -2.3787 0.0101 11 6 1.2008 -2.9380 1.2859 12 6 0.4403 -4.2512 1.0913 13 6 0.0983 -4.8498 2.4573 14 6 -0.6617 -6.1633 2.2628 15 6 -0.9979 -6.7532 3.6082 16 1 -0.6990 -6.2424 4.5116 17 6 -1.6871 -7.9448 3.6857 18 7 -2.0507 -8.5670 2.5855 19 14 -2.1032 -8.6763 5.3534 20 1 -1.5860 -7.7891 6.4261 21 1 -3.5769 -8.8034 5.4844 22 1 -1.4780 -10.0177 5.4755 23 1 -0.3634 0.0042 1.0277 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3634 -0.8921 -0.5102 26 1 1.6573 2.1315 0.0004 27 1 5.2562 2.4070 -0.0158 28 1 3.8017 3.2477 -0.0114 29 1 5.3592 -0.0083 -0.0121 30 1 4.5164 -2.8249 -1.0303 31 1 5.2942 -2.3782 0.5072 32 1 3.7517 -3.2666 0.5151 33 1 2.1205 -3.1288 1.8391 34 1 0.5794 -2.2380 1.8444 35 1 -0.4794 -4.0600 0.5383 36 1 1.0613 -4.9515 0.5327 37 1 1.0178 -5.0410 3.0106 38 1 -0.5228 -4.1495 3.0157 39 1 -1.5811 -5.9725 1.7092 40 1 -0.0402 -6.8634 1.7046 41 1 -2.5352 -9.4055 2.6401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385879916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = -49.509176 kcal Electronic energy + Delta-G solvation = -19121.068452 eV Core-core repulsion = 16192.673945 eV Total energy + Delta-G solvation = -2928.394507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19077 -37.72909 -34.94389 -34.05854 -33.59837 -32.28315 -29.32364 -28.83582 -26.79933 -26.55889 -24.63821 -21.84245 -21.29871 -21.08841 -20.02756 -17.46129 -17.43550 -16.35325 -16.20981 -15.64288 -15.02573 -14.56346 -14.40103 -14.05170 -13.50916 -13.24344 -13.07409 -13.03094 -12.95254 -12.46927 -12.40342 -11.94155 -11.87315 -11.74137 -11.51323 -11.17598 -11.00473 -10.67254 -10.53398 -10.40618 -10.02409 -9.66443 -9.48845 -9.29602 -9.01151 -8.67018 -8.31508 -7.50186 -5.96413 -3.98647 1.28642 1.39343 3.33175 3.40427 3.44592 3.49742 3.63419 4.12831 4.49395 4.71902 4.75681 5.11103 5.27739 5.35445 5.38787 5.40066 5.52704 5.56167 5.62822 5.65719 5.69911 5.73592 5.80090 5.96711 6.07981 6.12820 6.15782 6.30364 6.37669 6.50860 6.64036 6.65100 6.81681 6.95950 7.15545 7.24612 7.52082 7.72713 7.86974 7.87558 8.04604 8.46868 9.08984 9.65218 11.15009 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.003042 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.152062 B = 9203.305109 C = 9420.830485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.193 4.193 4 C 0.211 3.789 5 N -0.882 5.882 6 C -0.194 4.194 7 C -0.052 4.052 8 C -0.113 4.113 9 C 0.042 3.958 10 O -0.330 6.330 11 C 0.067 3.933 12 C -0.115 4.115 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.396 0.604 28 H 0.396 0.604 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 21.352 -6.330 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.216 4.216 4 C 0.107 3.893 5 N -0.421 5.421 6 C -0.216 4.216 7 C -0.053 4.053 8 C -0.170 4.170 9 C -0.003 4.003 10 O -0.248 6.248 11 C -0.007 4.007 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.224 0.776 28 H 0.224 0.776 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.142 21.041 -6.536 25.157 hybrid contribution 0.023 0.039 1.072 1.073 sum 12.165 21.080 -5.464 24.944 Atomic orbital electron populations 1.20739 0.90711 1.03190 1.02521 1.19965 0.96446 0.91921 0.96914 1.20287 0.91793 0.97602 1.11928 1.17718 0.91228 0.86351 0.93976 1.42462 1.08732 1.04991 1.85950 1.20276 0.99129 0.90260 1.11959 1.19963 0.92983 0.95379 0.96942 1.20739 0.99327 0.94228 1.02697 1.18143 0.89254 0.85503 1.07426 1.86085 1.74287 1.34564 1.29815 1.22922 0.98504 0.95508 0.83801 1.21655 0.99814 0.93705 1.00133 1.21573 1.00035 0.99372 0.93472 1.19091 0.95051 0.90460 0.96980 1.21311 1.35488 1.06142 0.92830 0.92680 1.25037 0.95985 0.97114 0.96429 1.69983 1.39631 1.17008 1.26897 0.86551 0.78045 0.79061 0.84434 1.19760 1.21036 1.21031 0.91130 0.91724 0.90383 0.86163 0.77598 0.77599 0.86162 0.90836 0.91825 0.90792 0.93451 0.93478 0.91590 0.91597 0.93333 0.93324 0.96510 0.96511 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.79 36.00 0.35 -0.95 16 2 C -0.05 -0.65 5.89 -104.50 -0.62 -1.27 16 3 C -0.19 -2.12 9.55 -39.40 -0.38 -2.49 16 4 C 0.21 2.16 6.76 -83.69 -0.57 1.59 16 5 N -0.88 -5.92 9.10 32.44 0.30 -5.62 16 6 C -0.19 -2.12 9.54 -39.40 -0.38 -2.50 16 7 C -0.05 -0.66 5.89 -104.50 -0.62 -1.27 16 8 C -0.11 -1.29 9.79 36.00 0.35 -0.94 16 9 C 0.04 0.60 5.67 -39.24 -0.22 0.38 16 10 O -0.33 -5.21 8.30 -19.72 -0.16 -5.37 16 11 C 0.07 1.04 5.69 37.16 0.21 1.26 16 12 C -0.12 -2.06 5.58 -26.73 -0.15 -2.21 16 13 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.08 0.98 7.52 -51.93 -0.39 0.59 16 26 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 27 H 0.40 1.97 8.84 -40.82 -0.36 1.60 16 28 H 0.40 1.97 8.84 -40.82 -0.36 1.60 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.60 8.09 -51.92 -0.42 0.18 16 32 H 0.07 0.93 6.31 -51.93 -0.33 0.61 16 33 H 0.05 0.71 7.25 -51.93 -0.38 0.34 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.94 340.78 -8.56 -40.50 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.85 Total: -0.78 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -2.69 Total: -24.13 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.03 Total: -32.25 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.16 Total: -5.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.94 -8.56 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385879916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.009 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds