Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38114 * 119.99501 * 2 1 4 4 C 1.38861 * 119.98310 * 180.30224 * 3 2 1 5 5 N 1.39941 * 120.01825 * 179.74712 * 4 3 2 6 6 C 1.38859 * 119.95971 * 359.71776 * 4 3 2 7 7 C 1.38104 * 119.98413 * 0.02562 * 6 4 3 8 8 C 1.50696 * 119.99390 * 179.97438 * 7 6 4 9 9 C 1.38705 * 119.98965 * 179.76901 * 2 1 3 10 10 O 1.35995 * 119.97998 * 359.97438 * 9 2 1 11 11 C 1.42905 * 116.99762 * 269.72152 * 10 9 2 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47481 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47432 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00335 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47148 * 120.00633 * 19 17 15 22 22 H 1.48497 * 109.47025 * 240.00429 * 19 17 15 23 23 H 1.09002 * 109.47218 * 270.23587 * 1 2 3 24 24 H 1.09005 * 109.47096 * 30.23387 * 1 2 3 25 25 H 1.09001 * 109.47240 * 150.23227 * 1 2 3 26 26 H 1.08006 * 120.00300 * 0.02562 * 3 2 1 27 27 H 0.96993 * 120.00159 * 179.97438 * 5 4 3 28 28 H 0.96996 * 119.99776 * 359.97229 * 5 4 3 29 29 H 1.08001 * 120.00377 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47221 * 270.02591 * 8 7 6 31 31 H 1.09007 * 109.46909 * 30.02207 * 8 7 6 32 32 H 1.08997 * 109.47448 * 150.02490 * 8 7 6 33 33 H 1.09000 * 109.47187 * 300.00191 * 11 10 9 34 34 H 1.09001 * 109.46558 * 60.00239 * 11 10 9 35 35 H 1.09000 * 109.47486 * 300.00062 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00784 * 12 11 10 37 37 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 38 38 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 39 39 H 1.09004 * 109.46672 * 300.00239 * 14 13 12 40 40 H 1.08996 * 109.47340 * 59.99477 * 14 13 12 41 41 H 0.96996 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1962 0.0000 4 6 3.5860 1.1959 -0.0063 5 7 4.2863 2.4074 -0.0117 6 6 4.2792 -0.0073 -0.0068 7 6 3.5873 -1.2025 -0.0014 8 6 4.3394 -2.5084 -0.0024 9 6 2.2002 -1.2013 0.0048 10 8 1.5196 -2.3787 0.0101 11 6 1.2008 -2.9380 1.2859 12 6 0.4403 -4.2512 1.0913 13 6 0.0983 -4.8498 2.4573 14 6 -0.6617 -6.1633 2.2628 15 6 -0.9979 -6.7532 3.6082 16 1 -0.6990 -6.2424 4.5116 17 6 -1.6871 -7.9448 3.6857 18 7 -2.0507 -8.5670 2.5855 19 14 -2.1032 -8.6763 5.3534 20 1 -1.5860 -7.7891 6.4261 21 1 -3.5769 -8.8034 5.4844 22 1 -1.4780 -10.0177 5.4755 23 1 -0.3634 0.0042 1.0277 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3634 -0.8921 -0.5102 26 1 1.6573 2.1315 0.0004 27 1 5.2562 2.4070 -0.0158 28 1 3.8017 3.2477 -0.0114 29 1 5.3592 -0.0083 -0.0121 30 1 4.5164 -2.8249 -1.0303 31 1 5.2942 -2.3782 0.5072 32 1 3.7517 -3.2666 0.5151 33 1 2.1205 -3.1288 1.8391 34 1 0.5794 -2.2380 1.8444 35 1 -0.4794 -4.0600 0.5383 36 1 1.0613 -4.9515 0.5327 37 1 1.0178 -5.0410 3.0106 38 1 -0.5228 -4.1495 3.0157 39 1 -1.5811 -5.9725 1.7092 40 1 -0.0402 -6.8634 1.7046 41 1 -2.5352 -9.4055 2.6401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385879916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = -67.996168 kcal Electronic energy + Delta-G solvation = -19121.870109 eV Core-core repulsion = 16192.673945 eV Total energy + Delta-G solvation = -2929.196163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12168 -38.75209 -36.53782 -35.16471 -34.47046 -34.21303 -30.76010 -29.96295 -27.72857 -27.63593 -26.35856 -23.50949 -22.23780 -21.95563 -21.75735 -18.51758 -18.40436 -18.27298 -17.09132 -16.74306 -16.56505 -16.05746 -15.73782 -14.95845 -14.63578 -14.55547 -14.35005 -14.00788 -13.88140 -13.83977 -13.68224 -13.21227 -13.11046 -13.08644 -12.76842 -12.64544 -12.56984 -12.31993 -12.09961 -12.02025 -11.45677 -11.32367 -11.10699 -10.84893 -10.63201 -10.55227 -9.53414 -8.29354 -8.19154 -6.30821 0.42372 0.47753 1.40573 1.41037 1.54632 2.41081 2.55613 3.00235 3.10571 3.13601 3.88521 3.89822 4.04134 4.20689 4.32158 4.40957 4.42502 4.53592 4.57474 4.61258 4.69044 4.76884 4.78119 4.84635 4.90335 4.91447 5.13631 5.15445 5.25203 5.25396 5.28624 5.43126 5.47518 5.54071 5.75182 5.76678 5.78622 5.86646 6.25370 6.54723 6.81691 6.86723 7.04411 7.38530 8.92942 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.003042 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.152062 B = 9203.305109 C = 9420.830485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.200 4.200 4 C 0.217 3.783 5 N -0.866 5.866 6 C -0.200 4.200 7 C -0.062 4.062 8 C -0.112 4.112 9 C 0.002 3.998 10 O -0.342 6.342 11 C 0.077 3.923 12 C -0.106 4.106 13 C -0.093 4.093 14 C 0.023 3.977 15 C -0.543 4.543 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.142 0.858 27 H 0.407 0.593 28 H 0.407 0.593 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.055 0.945 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.485 23.362 -5.256 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.223 4.223 4 C 0.111 3.889 5 N -0.406 5.406 6 C -0.223 4.223 7 C -0.063 4.063 8 C -0.169 4.169 9 C -0.043 4.043 10 O -0.260 6.260 11 C 0.003 3.997 12 C -0.144 4.144 13 C -0.131 4.131 14 C -0.014 4.014 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.160 0.840 27 H 0.237 0.763 28 H 0.237 0.763 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.333 23.100 -5.466 27.226 hybrid contribution -0.278 -0.482 0.667 0.868 sum 13.056 22.618 -4.799 26.553 Atomic orbital electron populations 1.20731 0.90284 1.03262 1.02679 1.20164 0.97041 0.92167 0.96959 1.20522 0.92345 0.97767 1.11644 1.17846 0.91280 0.87331 0.92435 1.42450 1.09436 1.04346 1.84364 1.20510 1.00235 0.89868 1.11684 1.20162 0.92672 0.96530 0.96983 1.20742 0.99837 0.93400 1.02891 1.18440 0.90067 0.85264 1.10514 1.86051 1.74817 1.35721 1.29409 1.22659 0.98406 0.94237 0.84397 1.21446 0.99826 0.94964 0.98126 1.21344 0.99581 0.96812 0.95341 1.19011 0.94118 0.92653 0.95625 1.21751 1.35737 1.06750 0.93824 0.92036 1.26031 0.95687 0.97597 1.00788 1.70118 1.40324 1.17573 1.29539 0.85367 0.77952 0.78260 0.79274 1.18452 1.20336 1.20332 0.90918 0.89668 0.92237 0.84022 0.76296 0.76296 0.84028 0.90577 0.89828 0.92550 0.92911 0.92958 0.92235 0.92247 0.92628 0.92611 0.99049 0.99053 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.79 71.23 0.70 -1.81 16 2 C -0.06 -1.54 5.89 -19.78 -0.12 -1.65 16 3 C -0.20 -3.96 9.55 22.39 0.21 -3.75 16 4 C 0.22 3.88 6.76 38.14 0.26 4.14 16 5 N -0.87 -8.72 9.10 -51.26 -0.47 -9.18 16 6 C -0.20 -3.97 9.54 22.39 0.21 -3.75 16 7 C -0.06 -1.54 5.89 -19.79 -0.12 -1.66 16 8 C -0.11 -2.50 9.79 71.23 0.70 -1.80 16 9 C 0.00 0.06 5.67 22.49 0.13 0.19 16 10 O -0.34 -11.02 8.30 -93.49 -0.78 -11.79 16 11 C 0.08 2.44 5.69 71.98 0.41 2.85 16 12 C -0.11 -3.89 5.58 30.60 0.17 -3.72 16 13 C -0.09 -3.94 5.15 30.59 0.16 -3.79 16 14 C 0.02 1.26 4.97 29.84 0.15 1.40 16 15 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 19 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.47 8.09 -2.38 -0.02 1.45 16 25 H 0.06 1.52 7.52 -2.39 -0.02 1.51 16 26 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.41 2.61 8.84 -92.71 -0.82 1.79 16 28 H 0.41 2.60 8.84 -92.71 -0.82 1.78 16 29 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.46 8.09 -2.38 -0.02 1.44 16 32 H 0.06 1.44 6.31 -2.39 -0.02 1.42 16 33 H 0.05 1.59 7.25 -2.39 -0.02 1.57 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.39 340.78 4.00 -65.39 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -0.62 Total: 11.09 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 3.56 Total: -44.51 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.18 Total: -67.15 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.78 Total: -11.79 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.39 4.00 -65.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385879916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.607 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds