Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.36343 * 125.63153 * 90.02303 * 13 12 11 15 15 C 1.34856 * 108.21378 * 180.02562 * 14 13 12 16 16 C 1.40890 * 107.41842 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.29136 * 180.02562 * 16 15 14 18 18 H 1.08991 * 109.46973 * 205.02372 * 17 16 15 19 19 O 1.42901 * 109.46959 * 325.02315 * 17 16 15 20 20 C 1.53004 * 109.47319 * 85.02023 * 17 16 15 21 21 C 1.52995 * 117.50183 * 248.62439 * 20 17 16 22 22 C 1.52994 * 117.49832 * 179.97438 * 20 17 16 23 23 C 1.34850 * 107.41639 * 359.73547 * 16 15 14 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.07993 * 125.89755 * 359.97438 * 14 13 12 34 34 H 1.08004 * 126.28890 * 180.02562 * 15 14 13 35 35 H 0.96701 * 114.00121 * 59.99995 * 19 17 16 36 36 H 1.09007 * 115.54792 * 34.33035 * 20 17 16 37 37 H 1.08999 * 117.49893 * 0.02562 * 21 20 17 38 38 H 1.08998 * 117.49723 * 145.01914 * 21 20 17 39 39 H 1.09004 * 117.49681 * 214.97830 * 22 20 17 40 40 H 1.09000 * 117.50338 * 359.97438 * 22 20 17 41 41 H 1.08000 * 125.89321 * 180.25904 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 7 1.7418 -7.4188 -0.0018 14 6 1.3446 -8.1066 -1.1100 15 6 0.7007 -9.2207 -0.7063 16 6 0.6999 -9.2203 0.7026 17 6 0.0923 -10.2720 1.5945 18 1 -0.1556 -9.8308 2.5598 19 8 -1.0947 -10.7847 0.9862 20 6 1.0944 -11.4105 1.7964 21 6 0.7641 -12.7631 1.1623 22 6 0.6626 -12.5834 2.6788 23 6 1.3484 -8.1090 1.1062 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.1003 -6.0924 -0.8922 32 1 3.1016 -6.0924 0.8877 33 1 1.5153 -7.8101 -2.1343 34 1 0.2656 -9.9747 -1.3456 35 1 -0.9489 -11.1931 0.1218 36 1 2.1426 -11.1134 1.8319 37 1 -0.1668 -12.8419 0.6009 38 1 1.5951 -13.3562 0.7803 39 1 1.4269 -13.0584 3.2940 40 1 -0.3351 -12.5439 3.1159 41 1 1.5238 -7.8150 2.1306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385894540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = -0.186905 kcal Electronic energy + Delta-G solvation = -18811.645689 eV Core-core repulsion = 15885.389956 eV Total energy + Delta-G solvation = -2926.255733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22574 -38.63866 -35.55113 -35.04558 -33.14012 -31.50754 -29.65022 -28.31107 -26.31448 -24.62858 -22.64231 -22.16139 -21.01305 -20.23385 -20.02071 -19.63308 -17.48469 -16.75331 -16.29948 -15.54678 -15.01111 -14.73189 -14.58385 -14.38261 -13.91946 -13.69421 -12.97065 -12.69996 -12.61585 -12.38790 -11.98688 -11.91365 -11.76602 -11.68360 -11.46056 -11.08894 -10.72447 -10.70935 -10.65252 -10.55102 -10.36658 -10.02778 -9.79026 -9.44301 -9.12654 -8.39340 -8.37081 -8.02897 -6.03712 -4.06752 2.35639 2.96298 3.07453 3.28014 3.35575 3.39214 3.58791 4.38242 4.42330 4.54574 4.74051 4.76258 4.85196 5.09163 5.19788 5.22062 5.24894 5.31971 5.36595 5.43693 5.44700 5.51918 5.68003 5.74158 5.83403 5.91661 5.96751 6.01718 6.22323 6.29029 6.45177 6.60206 6.76146 7.02009 7.02714 7.30191 7.47684 7.57011 7.62724 7.75677 7.95775 8.37444 9.00713 9.57723 11.07614 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048932 B = 0.002665 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.080474 B =10504.892219 C =10580.949205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.132 4.132 12 C 0.102 3.898 13 N -0.438 5.438 14 C -0.010 4.010 15 C -0.195 4.195 16 C -0.204 4.204 17 C 0.213 3.787 18 H 0.102 0.898 19 O -0.556 6.556 20 C -0.177 4.177 21 C -0.178 4.178 22 C -0.176 4.176 23 C 0.000 4.000 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.372 0.628 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -23.413 1.370 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.171 4.171 12 C -0.019 4.019 13 N -0.112 5.112 14 C -0.141 4.141 15 C -0.219 4.219 16 C -0.211 4.211 17 C 0.153 3.847 18 H 0.120 0.880 19 O -0.362 6.362 20 C -0.196 4.196 21 C -0.215 4.215 22 C -0.213 4.213 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.220 0.780 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.124 -22.728 1.908 23.020 hybrid contribution 0.785 0.864 -0.562 1.295 sum 3.909 -21.864 1.346 22.251 Atomic orbital electron populations 1.69981 1.06080 1.26550 1.50795 1.25046 0.94861 0.99339 0.95308 0.86535 0.80065 0.83769 0.77628 1.19751 1.20982 1.20971 1.21285 0.93034 0.91079 1.50627 0.92648 1.19089 0.93954 0.91265 0.97298 1.21589 0.99176 0.93361 1.00452 1.22062 0.98073 0.94104 1.02814 1.22132 0.94799 0.81045 1.03958 1.44305 1.42926 1.18129 1.05809 1.21789 1.05416 0.95107 0.91779 1.20503 1.07434 0.99945 0.94046 1.19910 1.07939 0.98644 0.94636 1.19518 0.82490 0.88386 0.94317 0.88041 1.86562 1.32802 1.79168 1.37626 1.23153 1.00859 0.90123 1.05464 1.22903 1.03188 0.99334 0.96083 1.22939 1.02870 1.02272 0.93258 1.21534 1.05207 0.94576 0.91810 0.93002 0.96616 0.96596 0.93159 0.93156 0.91728 0.91734 0.89478 0.89489 0.82411 0.85306 0.77985 0.87418 0.88419 0.89111 0.89148 0.88499 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.13 -2.13 5.54 -26.73 -0.15 -2.28 16 12 C 0.10 1.29 6.09 -4.04 -0.02 1.26 16 13 N -0.44 -5.72 2.75 -117.13 -0.32 -6.04 16 14 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 15 C -0.19 -2.36 10.25 -39.78 -0.41 -2.77 16 16 C -0.20 -2.50 5.16 -104.82 -0.54 -3.04 16 17 C 0.21 2.27 3.79 -27.88 -0.11 2.17 16 18 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 19 O -0.56 -6.20 12.38 -35.23 -0.44 -6.63 16 20 C -0.18 -1.62 5.69 -90.62 -0.52 -2.13 16 21 C -0.18 -1.41 9.74 -26.71 -0.26 -1.67 16 22 C -0.18 -1.44 10.19 -26.71 -0.27 -1.71 16 23 C 0.00 0.00 11.35 -16.75 -0.19 -0.19 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.30 7.70 -52.48 -0.40 0.90 16 35 H 0.37 3.15 6.82 45.56 0.31 3.46 16 36 H 0.11 1.02 8.11 -51.92 -0.42 0.60 16 37 H 0.10 0.72 6.38 -51.93 -0.33 0.39 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -31.44 342.07 -9.54 -40.98 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.31 Total: 2.28 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -3.34 Total: -26.01 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.41 Total: -32.32 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.44 Total: -6.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.44 -9.54 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.792 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds