Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.36343 * 125.63153 * 90.02303 * 13 12 11 15 15 C 1.34856 * 108.21378 * 180.02562 * 14 13 12 16 16 C 1.40890 * 107.41842 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.29136 * 180.02562 * 16 15 14 18 18 H 1.08991 * 109.46973 * 205.02372 * 17 16 15 19 19 O 1.42901 * 109.46959 * 325.02315 * 17 16 15 20 20 C 1.53004 * 109.47319 * 85.02023 * 17 16 15 21 21 C 1.52995 * 117.50183 * 248.62439 * 20 17 16 22 22 C 1.52994 * 117.49832 * 179.97438 * 20 17 16 23 23 C 1.34850 * 107.41639 * 359.73547 * 16 15 14 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.07993 * 125.89755 * 359.97438 * 14 13 12 34 34 H 1.08004 * 126.28890 * 180.02562 * 15 14 13 35 35 H 0.96701 * 114.00121 * 59.99995 * 19 17 16 36 36 H 1.09007 * 115.54792 * 34.33035 * 20 17 16 37 37 H 1.08999 * 117.49893 * 0.02562 * 21 20 17 38 38 H 1.08998 * 117.49723 * 145.01914 * 21 20 17 39 39 H 1.09004 * 117.49681 * 214.97830 * 22 20 17 40 40 H 1.09000 * 117.50338 * 359.97438 * 22 20 17 41 41 H 1.08000 * 125.89321 * 180.25904 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 7 1.7418 -7.4188 -0.0018 14 6 1.3446 -8.1066 -1.1100 15 6 0.7007 -9.2207 -0.7063 16 6 0.6999 -9.2203 0.7026 17 6 0.0923 -10.2720 1.5945 18 1 -0.1556 -9.8308 2.5598 19 8 -1.0947 -10.7847 0.9862 20 6 1.0944 -11.4105 1.7964 21 6 0.7641 -12.7631 1.1623 22 6 0.6626 -12.5834 2.6788 23 6 1.3484 -8.1090 1.1062 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.1003 -6.0924 -0.8922 32 1 3.1016 -6.0924 0.8877 33 1 1.5153 -7.8101 -2.1343 34 1 0.2656 -9.9747 -1.3456 35 1 -0.9489 -11.1931 0.1218 36 1 2.1426 -11.1134 1.8319 37 1 -0.1668 -12.8419 0.6009 38 1 1.5951 -13.3562 0.7803 39 1 1.4269 -13.0584 3.2940 40 1 -0.3351 -12.5439 3.1159 41 1 1.5238 -7.8150 2.1306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385894540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = -17.196627 kcal Electronic energy + Delta-G solvation = -18812.383286 eV Core-core repulsion = 15885.389956 eV Total energy + Delta-G solvation = -2926.993330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15376 -39.41013 -36.97717 -35.88927 -34.93025 -32.99689 -30.68558 -29.72439 -27.46936 -26.11351 -23.74633 -23.21115 -21.89605 -21.77604 -20.97769 -20.52294 -18.52183 -18.35442 -17.51835 -16.56721 -16.47806 -16.11078 -15.68260 -15.53341 -14.77368 -14.73543 -14.41821 -13.96425 -13.94349 -13.54686 -13.37778 -13.24253 -12.90810 -12.80932 -12.46437 -12.33217 -12.30764 -12.24342 -12.19144 -11.48015 -11.41374 -11.39374 -11.18707 -11.05580 -10.76708 -10.58963 -9.35190 -8.96778 -8.22492 -6.34313 1.38575 1.39111 1.39641 1.52578 2.04833 2.11743 2.39377 2.92718 3.10825 3.61682 3.77819 3.86963 3.97971 4.06655 4.10260 4.17878 4.32828 4.34794 4.38019 4.50732 4.58835 4.64447 4.71748 4.79224 4.83033 4.91718 5.01738 5.06344 5.22437 5.23568 5.24592 5.31634 5.34843 5.50696 5.56445 5.71431 5.83465 6.10171 6.21365 6.36557 6.53845 6.83685 6.84176 7.35724 8.89674 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048932 B = 0.002665 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.080474 B =10504.892219 C =10580.949205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.120 4.120 12 C 0.112 3.888 13 N -0.446 5.446 14 C -0.024 4.024 15 C -0.204 4.204 16 C -0.209 4.209 17 C 0.214 3.786 18 H 0.096 0.904 19 O -0.568 6.568 20 C -0.183 4.183 21 C -0.172 4.172 22 C -0.175 4.175 23 C -0.019 4.019 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.382 0.618 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -24.155 1.201 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.159 4.159 12 C -0.009 4.009 13 N -0.120 5.120 14 C -0.154 4.154 15 C -0.228 4.228 16 C -0.216 4.216 17 C 0.155 3.845 18 H 0.114 0.886 19 O -0.376 6.376 20 C -0.202 4.202 21 C -0.209 4.209 22 C -0.212 4.212 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.755 -23.494 1.735 24.033 hybrid contribution 0.206 1.050 -0.515 1.187 sum 4.961 -22.444 1.220 23.018 Atomic orbital electron populations 1.70122 1.07968 1.27735 1.51865 1.26053 0.95774 1.03639 0.94781 0.85366 0.79171 0.78588 0.77729 1.18251 1.20454 1.20461 1.21767 0.93701 0.92286 1.50230 0.91757 1.19030 0.94571 0.93537 0.94485 1.21361 0.97914 0.92485 1.01436 1.21846 0.98282 0.94171 1.01564 1.21990 0.93693 0.79553 1.05713 1.44337 1.43411 1.18165 1.06084 1.22202 1.05447 0.95320 0.92480 1.20821 1.07301 1.00356 0.94321 1.20179 1.07518 0.98833 0.95071 1.19483 0.82661 0.88674 0.93708 0.88638 1.86535 1.33236 1.79326 1.38487 1.22995 1.00134 0.90105 1.06942 1.22998 1.03737 0.98207 0.95946 1.22988 1.02926 1.01565 0.93693 1.21887 1.05658 0.94976 0.92444 0.92804 0.99471 0.99508 0.92115 0.92039 0.93105 0.92962 0.87693 0.87852 0.80833 0.83621 0.76767 0.87756 0.87901 0.88139 0.88049 0.88973 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.09 -3.58 5.15 30.59 0.16 -3.42 16 11 C -0.12 -3.82 5.54 30.59 0.17 -3.65 16 12 C 0.11 2.62 6.09 86.38 0.53 3.15 16 13 N -0.45 -11.05 2.75 -524.49 -1.44 -12.49 16 14 C -0.02 -0.58 11.43 83.21 0.95 0.37 16 15 C -0.20 -4.68 10.25 22.14 0.23 -4.45 16 16 C -0.21 -4.93 5.16 -19.99 -0.10 -5.03 16 17 C 0.21 4.43 3.79 29.85 0.11 4.54 16 18 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 19 O -0.57 -12.14 12.38 -148.98 -1.84 -13.99 16 20 C -0.18 -3.12 5.69 -10.80 -0.06 -3.18 16 21 C -0.17 -2.42 9.74 30.61 0.30 -2.12 16 22 C -0.17 -2.61 10.19 30.61 0.31 -2.30 16 23 C -0.02 -0.46 11.35 83.21 0.94 0.48 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.15 2.70 7.70 -2.91 -0.02 2.68 16 35 H 0.38 6.00 6.82 -74.06 -0.50 5.50 16 36 H 0.10 1.86 8.11 -2.38 -0.02 1.84 16 37 H 0.10 1.33 6.38 -2.39 -0.02 1.31 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -67.68 342.07 3.89 -63.79 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.49 Total: 18.58 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 4.38 Total: -44.61 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -1.16 Total: -69.90 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.84 Total: -13.99 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.68 3.89 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.595 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds