Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.36343 * 125.63153 * 90.02303 * 13 12 11 15 15 C 1.34856 * 108.21378 * 180.02562 * 14 13 12 16 16 C 1.40890 * 107.41842 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.29136 * 180.02562 * 16 15 14 18 18 H 1.08993 * 109.47082 * 159.97151 * 17 16 15 19 19 O 1.42907 * 109.47040 * 39.97460 * 17 16 15 20 20 C 1.52998 * 109.47136 * 279.97615 * 17 16 15 21 21 C 1.53003 * 117.49514 * 248.74836 * 20 17 16 22 22 C 1.53003 * 117.50077 * 180.08710 * 20 17 16 23 23 C 1.34850 * 107.41639 * 359.73547 * 16 15 14 24 24 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.07993 * 125.89755 * 359.97438 * 14 13 12 34 34 H 1.08004 * 126.28890 * 180.02562 * 15 14 13 35 35 H 0.96702 * 113.99917 * 300.00145 * 19 17 16 36 36 H 1.08998 * 115.55085 * 34.41381 * 20 17 16 37 37 H 1.08994 * 117.49860 * 359.97438 * 21 20 17 38 38 H 1.08999 * 117.49772 * 145.02060 * 21 20 17 39 39 H 1.08988 * 117.49544 * 214.97629 * 22 20 17 40 40 H 1.09002 * 117.49437 * 359.97392 * 22 20 17 41 41 H 1.08000 * 125.89321 * 180.25904 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 6 6.0616 -4.0790 0.0009 13 7 7.5266 -4.0791 0.0003 14 6 8.3213 -4.0788 1.1082 15 6 9.6079 -4.0784 0.7040 16 6 9.6073 -4.0779 -0.7049 17 6 10.8217 -4.0778 -1.5973 18 1 10.5426 -4.4293 -2.5906 19 8 11.8167 -4.9439 -1.0478 20 6 11.3810 -2.6572 -1.6974 21 6 11.2584 -1.9431 -3.0450 22 6 12.6226 -2.4464 -2.5663 23 6 8.3205 -4.0839 -1.1080 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 3.6579 -3.1513 -0.8880 28 1 3.6586 -3.1495 0.8919 29 1 5.9142 -2.1238 -0.8908 30 1 5.9156 -2.1217 0.8892 31 1 5.6989 -4.5922 0.8916 32 1 5.6976 -4.5937 -0.8883 33 1 7.9795 -4.0782 2.1326 34 1 10.4786 -4.0786 1.3430 35 1 12.1130 -4.6909 -0.1627 36 1 11.2885 -2.0510 -0.7963 37 1 10.7797 -2.4855 -3.8602 38 1 11.0857 -0.8670 -3.0304 39 1 13.3465 -1.7012 -2.2370 40 1 13.0411 -3.3198 -3.0663 41 1 7.9779 -4.0890 -2.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385894542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = 1.589358 kcal Electronic energy + Delta-G solvation = -18931.680996 eV Core-core repulsion = 16005.502288 eV Total energy + Delta-G solvation = -2926.178708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27587 -38.39414 -35.76484 -35.37771 -33.12448 -31.64244 -29.64343 -28.66094 -26.35962 -24.63291 -22.53712 -22.01104 -21.34106 -20.25710 -19.98418 -19.76529 -17.46985 -16.74354 -16.57539 -15.58543 -15.08661 -14.75004 -14.52021 -14.25881 -13.95810 -13.75845 -13.21562 -12.85444 -12.72256 -12.58813 -12.25668 -11.95957 -11.92330 -11.74149 -11.32885 -11.26645 -10.98774 -10.73417 -10.70622 -10.36698 -10.10930 -10.01662 -9.82768 -9.71377 -9.25004 -8.58690 -8.44709 -8.09106 -6.09253 -4.07754 2.29749 2.88688 3.00825 3.26937 3.34659 3.38134 3.57958 4.40839 4.43886 4.48609 4.72330 4.79062 4.84098 5.01274 5.12091 5.12598 5.20184 5.24772 5.35590 5.36588 5.42137 5.45415 5.63331 5.69528 5.72900 5.86673 5.92244 6.00697 6.13662 6.16601 6.38466 6.46098 6.55085 6.80170 6.96080 7.21674 7.24160 7.34912 7.41666 7.55274 7.73981 8.48170 8.95145 9.53282 11.04195 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.003315 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.569567 B = 8443.357244 C = 9175.833871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.135 4.135 12 C 0.101 3.899 13 N -0.439 5.439 14 C -0.010 4.010 15 C -0.198 4.198 16 C -0.204 4.204 17 C 0.214 3.786 18 H 0.096 0.904 19 O -0.556 6.556 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.172 4.172 23 C 0.003 3.997 24 H 0.263 0.737 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.373 0.627 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.149 -7.572 -1.794 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.138 4.138 11 C -0.173 4.173 12 C -0.020 4.020 13 N -0.113 5.113 14 C -0.140 4.140 15 C -0.222 4.222 16 C -0.211 4.211 17 C 0.154 3.846 18 H 0.113 0.887 19 O -0.361 6.361 20 C -0.199 4.199 21 C -0.211 4.211 22 C -0.209 4.209 23 C -0.128 4.128 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.176 0.824 34 H 0.148 0.852 35 H 0.220 0.780 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 22.511 -7.768 -2.358 23.930 hybrid contribution 0.210 1.402 0.587 1.535 sum 22.721 -6.366 -1.771 23.663 Atomic orbital electron populations 1.69918 1.06309 1.26939 1.51069 1.25044 0.94745 0.99227 0.94517 0.86768 0.80325 0.83592 0.78538 1.20270 1.21320 1.19079 1.21147 0.89507 0.94476 1.50947 0.91045 1.19556 0.97136 0.92093 0.96255 1.21416 0.90683 1.00396 1.01351 1.22090 0.98568 0.93959 1.02678 1.22110 0.75896 0.99705 1.04243 1.44298 1.06493 1.54638 1.05825 1.21794 0.90344 1.10116 0.91785 1.20534 0.95875 1.11744 0.94054 1.19917 0.93946 1.12645 0.94567 1.19547 0.83632 0.86385 0.94994 0.88662 1.86546 1.58663 1.54488 1.36359 1.23068 1.02510 0.98516 0.95832 1.22931 1.00434 1.00564 0.97134 1.22883 0.90959 1.03169 1.03937 1.21541 0.89806 1.09731 0.91758 0.92695 0.96677 0.97101 0.92529 0.92498 0.91762 0.91762 0.89292 0.89316 0.82379 0.85218 0.77958 0.87694 0.88721 0.88802 0.89040 0.88519 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.83 5.15 -26.73 -0.14 -1.97 16 11 C -0.13 -1.99 5.54 -26.73 -0.15 -2.14 16 12 C 0.10 1.22 6.09 -4.04 -0.02 1.19 16 13 N -0.44 -5.46 2.75 -117.13 -0.32 -5.78 16 14 C -0.01 -0.12 11.43 -16.75 -0.19 -0.31 16 15 C -0.20 -2.27 10.29 -39.78 -0.41 -2.68 16 16 C -0.20 -2.39 5.12 -104.82 -0.54 -2.93 16 17 C 0.21 2.22 3.62 -27.88 -0.10 2.11 16 18 H 0.10 0.98 7.90 -51.93 -0.41 0.57 16 19 O -0.56 -5.88 13.18 -35.23 -0.46 -6.34 16 20 C -0.18 -1.71 5.35 -90.62 -0.48 -2.19 16 21 C -0.17 -1.52 10.18 -26.69 -0.27 -1.79 16 22 C -0.17 -1.44 10.16 -26.69 -0.27 -1.71 16 23 C 0.00 0.04 11.35 -16.75 -0.19 -0.15 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.22 7.82 -52.48 -0.41 0.81 16 35 H 0.37 2.88 8.41 45.56 0.38 3.27 16 36 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.68 8.14 -51.94 -0.42 0.26 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -31.75 342.30 -9.11 -40.86 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.28 Total: 2.38 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.31 Total: -26.28 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.45 Total: -32.81 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.46 Total: -6.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.75 -9.11 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.449 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds