Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.36343 * 125.63153 * 90.02303 * 13 12 11 15 15 C 1.34856 * 108.21378 * 180.02562 * 14 13 12 16 16 C 1.40890 * 107.41842 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.29136 * 180.02562 * 16 15 14 18 18 H 1.08993 * 109.47082 * 159.97151 * 17 16 15 19 19 O 1.42907 * 109.47040 * 39.97460 * 17 16 15 20 20 C 1.52998 * 109.47136 * 279.97615 * 17 16 15 21 21 C 1.53003 * 117.49514 * 248.74836 * 20 17 16 22 22 C 1.53003 * 117.50077 * 180.08710 * 20 17 16 23 23 C 1.34850 * 107.41639 * 359.73547 * 16 15 14 24 24 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.07993 * 125.89755 * 359.97438 * 14 13 12 34 34 H 1.08004 * 126.28890 * 180.02562 * 15 14 13 35 35 H 0.96702 * 113.99917 * 300.00145 * 19 17 16 36 36 H 1.08998 * 115.55085 * 34.41381 * 20 17 16 37 37 H 1.08994 * 117.49860 * 359.97438 * 21 20 17 38 38 H 1.08999 * 117.49772 * 145.02060 * 21 20 17 39 39 H 1.08988 * 117.49544 * 214.97629 * 22 20 17 40 40 H 1.09002 * 117.49437 * 359.97392 * 22 20 17 41 41 H 1.08000 * 125.89321 * 180.25904 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 6 6.0616 -4.0790 0.0009 13 7 7.5266 -4.0791 0.0003 14 6 8.3213 -4.0788 1.1082 15 6 9.6079 -4.0784 0.7040 16 6 9.6073 -4.0779 -0.7049 17 6 10.8217 -4.0778 -1.5973 18 1 10.5426 -4.4293 -2.5906 19 8 11.8167 -4.9439 -1.0478 20 6 11.3810 -2.6572 -1.6974 21 6 11.2584 -1.9431 -3.0450 22 6 12.6226 -2.4464 -2.5663 23 6 8.3205 -4.0839 -1.1080 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 3.6579 -3.1513 -0.8880 28 1 3.6586 -3.1495 0.8919 29 1 5.9142 -2.1238 -0.8908 30 1 5.9156 -2.1217 0.8892 31 1 5.6989 -4.5922 0.8916 32 1 5.6976 -4.5937 -0.8883 33 1 7.9795 -4.0782 2.1326 34 1 10.4786 -4.0786 1.3430 35 1 12.1130 -4.6909 -0.1627 36 1 11.2885 -2.0510 -0.7963 37 1 10.7797 -2.4855 -3.8602 38 1 11.0857 -0.8670 -3.0304 39 1 13.3465 -1.7012 -2.2370 40 1 13.0411 -3.3198 -3.0663 41 1 7.9779 -4.0890 -2.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385894542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = -16.494110 kcal Electronic energy + Delta-G solvation = -18932.465154 eV Core-core repulsion = 16005.502288 eV Total energy + Delta-G solvation = -2926.962866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14383 -39.14755 -37.01756 -36.26772 -34.89214 -33.16157 -30.69345 -29.91993 -27.46629 -25.95125 -23.43917 -23.19069 -22.09052 -21.85894 -20.89677 -20.60829 -18.90156 -18.34359 -17.32125 -16.54463 -16.39173 -16.14356 -15.62338 -15.31080 -14.90821 -14.86721 -14.61245 -14.08354 -14.02754 -13.71556 -13.44663 -13.39766 -12.94206 -12.82456 -12.48930 -12.38762 -12.17441 -12.11742 -11.80001 -11.53006 -11.44454 -11.42155 -11.31841 -11.06172 -10.86549 -10.78971 -9.35394 -8.96989 -8.32119 -6.36208 1.33459 1.35148 1.39931 1.46951 2.03534 2.10943 2.33514 2.89209 3.03406 3.70141 3.76755 3.84918 3.94951 4.04522 4.13245 4.16828 4.31083 4.34286 4.36554 4.46125 4.58941 4.62982 4.66473 4.74362 4.81464 4.89326 4.97975 5.04822 5.09686 5.12933 5.24134 5.29027 5.33619 5.51287 5.56349 5.60103 5.64853 6.10406 6.25913 6.36776 6.53970 6.72520 6.88764 7.28929 8.84693 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.003315 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.569567 B = 8443.357244 C = 9175.833871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.120 4.120 12 C 0.108 3.892 13 N -0.445 5.445 14 C -0.023 4.023 15 C -0.206 4.206 16 C -0.209 4.209 17 C 0.218 3.782 18 H 0.093 0.907 19 O -0.567 6.567 20 C -0.185 4.185 21 C -0.177 4.177 22 C -0.164 4.164 23 C -0.016 4.016 24 H 0.266 0.734 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.147 0.853 35 H 0.385 0.615 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.433 -7.123 -1.773 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.158 4.158 12 C -0.013 4.013 13 N -0.119 5.119 14 C -0.153 4.153 15 C -0.230 4.230 16 C -0.216 4.216 17 C 0.158 3.842 18 H 0.111 0.889 19 O -0.374 6.374 20 C -0.204 4.204 21 C -0.214 4.214 22 C -0.201 4.201 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.192 0.808 34 H 0.165 0.835 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 24.822 -7.335 -2.332 25.987 hybrid contribution -0.526 1.184 0.589 1.423 sum 24.295 -6.151 -1.743 25.122 Atomic orbital electron populations 1.70071 1.08291 1.28171 1.52730 1.26042 0.95622 1.03584 0.94193 0.85651 0.79415 0.78339 0.79198 1.19171 1.20918 1.17223 1.21552 0.92285 0.93139 1.50225 0.94766 1.19537 0.93745 0.95505 0.96277 1.21254 0.93320 0.97110 1.01417 1.21862 0.95579 0.96024 1.02373 1.21992 0.75993 0.97801 1.05519 1.44323 1.06452 1.55099 1.06072 1.22201 0.90616 1.10042 0.92477 1.20850 0.96515 1.11345 0.94291 1.20167 0.94304 1.12117 0.95022 1.19501 0.83244 0.86832 0.94609 0.88872 1.86517 1.58660 1.54866 1.37340 1.22954 1.03555 0.97948 0.95928 1.23011 1.00808 1.00733 0.96822 1.22921 0.90829 1.03283 1.03103 1.21880 0.90195 1.10200 0.92385 0.92487 0.96521 0.96653 0.92554 0.92499 0.92082 0.92028 0.88024 0.88217 0.80800 0.83520 0.76659 0.88308 0.88334 0.88561 0.88051 0.88523 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.09 -3.29 5.15 30.59 0.16 -3.13 16 11 C -0.12 -3.30 5.54 30.59 0.17 -3.14 16 12 C 0.11 2.35 6.09 86.38 0.53 2.88 16 13 N -0.45 -10.19 2.75 -524.49 -1.44 -11.63 16 14 C -0.02 -0.51 11.43 83.21 0.95 0.44 16 15 C -0.21 -4.34 10.29 22.14 0.23 -4.11 16 16 C -0.21 -4.58 5.12 -19.99 -0.10 -4.69 16 17 C 0.22 4.20 3.62 29.85 0.11 4.31 16 18 H 0.09 1.81 7.90 -2.39 -0.02 1.79 16 19 O -0.57 -11.14 13.18 -148.98 -1.96 -13.10 16 20 C -0.19 -3.22 5.35 -10.79 -0.06 -3.27 16 21 C -0.18 -2.82 10.18 30.62 0.31 -2.50 16 22 C -0.16 -2.46 10.16 30.62 0.31 -2.15 16 23 C -0.02 -0.36 11.35 83.21 0.94 0.58 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 26 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.15 2.44 7.82 -2.91 -0.02 2.42 16 35 H 0.38 5.32 8.41 -74.06 -0.62 4.69 16 36 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 37 H 0.10 1.47 8.05 -2.39 -0.02 1.46 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.92 342.30 3.47 -64.45 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.31 Total: 18.62 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.38 Total: -45.02 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.14 Total: -71.13 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.96 Total: -13.10 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -67.92 3.47 -64.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.961 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds