Wall clock time and date at job start Mon Mar 30 2020 07:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47078 * 2 1 4 4 C 1.53000 * 109.47381 * 60.00451 * 3 2 1 5 5 C 1.53002 * 109.47137 * 299.99830 * 3 2 1 6 6 C 1.53005 * 109.46948 * 180.02562 * 3 2 1 7 7 N 1.46504 * 109.46985 * 180.02562 * 6 3 2 8 8 C 1.39778 * 119.99947 * 180.02562 * 7 6 3 9 9 C 1.38954 * 120.00597 * 359.72192 * 8 7 6 10 10 C 1.38011 * 119.99321 * 179.72738 * 9 8 7 11 11 C 1.38904 * 120.00463 * 0.54662 * 10 9 8 12 12 O 1.35796 * 119.99265 * 179.70533 * 11 10 9 13 13 C 1.34810 * 117.00141 * 174.47908 * 12 11 10 14 14 H 1.08002 * 119.99416 * 5.05671 * 13 12 11 15 15 C 1.38613 * 120.00469 * 185.05687 * 13 12 11 16 16 N 1.31583 * 120.00273 * 180.02562 * 15 13 12 17 17 Si 1.86809 * 119.99825 * 0.02562 * 15 13 12 18 18 H 1.48490 * 109.47151 * 89.99946 * 17 15 13 19 19 H 1.48496 * 109.46835 * 210.00120 * 17 15 13 20 20 H 1.48504 * 109.46934 * 329.99632 * 17 15 13 21 21 C 1.38893 * 120.00989 * 359.72458 * 11 10 9 22 22 C 1.38014 * 120.00952 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.47476 * 299.99902 * 1 2 3 24 24 H 1.08997 * 109.47458 * 60.00207 * 1 2 3 25 25 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46789 * 239.99810 * 2 1 3 27 27 H 1.09000 * 109.47204 * 120.00245 * 2 1 3 28 28 H 1.09001 * 109.47065 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46677 * 299.99878 * 4 3 2 30 30 H 1.08996 * 109.47475 * 59.99305 * 4 3 2 31 31 H 1.08999 * 109.47265 * 300.00518 * 5 3 2 32 32 H 1.09004 * 109.46929 * 60.00117 * 5 3 2 33 33 H 1.09001 * 109.47202 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.47433 * 60.00104 * 6 3 2 35 35 H 1.09009 * 109.46794 * 299.99726 * 6 3 2 36 36 H 0.96998 * 119.99805 * 359.97438 * 7 6 3 37 37 H 1.08000 * 120.00063 * 359.97438 * 9 8 7 38 38 H 1.08001 * 119.99718 * 180.25216 * 10 9 8 39 39 H 0.96999 * 119.99560 * 179.97438 * 16 15 13 40 40 H 1.08000 * 119.99236 * 179.97438 * 21 11 10 41 41 H 1.07998 * 120.00261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4424 -0.0006 7 7 4.0583 2.8237 0.0000 8 6 5.4326 3.0791 -0.0010 9 6 6.3356 2.0230 0.0033 10 6 7.6924 2.2755 -0.0033 11 6 8.1553 3.5851 -0.0028 12 8 9.4904 3.8332 -0.0033 13 6 9.8737 5.1206 -0.1184 14 1 9.1326 5.9062 -0.1225 15 6 11.2187 5.4359 -0.2313 16 7 11.5928 6.6925 -0.3431 17 14 12.5004 4.0769 -0.2249 18 1 12.7454 3.6210 -1.6167 19 1 13.7655 4.5925 0.3571 20 1 12.0090 2.9369 0.5902 21 6 7.2528 4.6409 -0.0014 22 6 5.8959 4.3890 0.0000 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8930 3.1915 1.2490 29 1 0.4400 2.1637 1.2493 30 1 1.8933 1.6499 2.1392 31 1 1.8932 1.6498 -2.1393 32 1 0.4399 2.1637 -1.2493 33 1 1.8929 3.1915 -1.2491 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9284 0.8892 36 1 3.4280 3.5609 0.0003 37 1 5.9757 1.0048 0.0078 38 1 8.3944 1.4547 -0.0041 39 1 12.5341 6.9131 -0.4218 40 1 7.6130 5.6590 -0.0006 41 1 5.1942 5.2100 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394580224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:08 Heat of formation + Delta-G solvation = -15.005274 kcal Electronic energy + Delta-G solvation = -19394.503624 eV Core-core repulsion = 16467.605318 eV Total energy + Delta-G solvation = -2926.898306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37541 -38.55973 -36.75332 -33.79991 -32.17346 -30.46325 -30.19215 -27.76638 -27.51157 -26.36505 -24.82298 -23.21039 -21.98508 -20.51183 -18.81655 -17.63332 -17.32666 -16.67408 -15.34201 -15.20282 -14.79283 -14.41669 -14.37387 -13.80832 -13.69447 -13.58107 -13.40145 -12.72139 -12.66114 -12.41129 -12.33188 -12.15173 -12.03373 -11.98584 -11.51462 -11.44710 -11.31984 -10.84488 -10.77378 -10.70582 -10.66330 -10.50848 -10.06861 -9.26067 -9.16611 -8.50823 -8.21101 -6.45176 -6.28097 -3.92344 2.15501 2.51616 3.29956 3.33427 3.48936 3.82673 4.34879 4.50112 4.55639 4.59274 4.65029 5.01172 5.05587 5.11687 5.20987 5.23253 5.36320 5.45652 5.53269 5.60985 5.62901 5.68952 5.71595 5.75106 5.80531 5.81457 5.87234 5.94113 6.16095 6.18911 6.19858 6.21903 6.48969 6.82046 6.85930 7.04868 7.38367 7.52657 7.83172 7.97141 8.13979 8.25810 9.08735 9.75388 10.80604 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052745 B = 0.003372 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.729050 B = 8301.388381 C = 8626.145739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.144 3.856 7 N -0.756 5.756 8 C 0.134 3.866 9 C -0.150 4.150 10 C -0.149 4.149 11 C 0.116 3.884 12 O -0.229 6.229 13 C -0.383 4.383 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.260 1.260 21 C -0.175 4.175 22 C -0.146 4.146 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.390 0.610 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.133 0.867 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.464 -11.218 0.631 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.018 3.982 7 N -0.393 5.393 8 C 0.036 3.964 9 C -0.173 4.173 10 C -0.169 4.169 11 C 0.065 3.935 12 O -0.135 6.135 13 C -0.459 4.459 14 H 0.120 0.880 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.195 4.195 22 C -0.168 4.168 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.225 0.775 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.072 -11.417 0.632 23.100 hybrid contribution 0.381 0.002 -0.042 0.383 sum -19.692 -11.415 0.589 22.769 Atomic orbital electron populations 1.21874 0.95792 1.01446 1.02088 1.21503 0.96029 0.95243 1.02202 1.20776 0.94632 0.95965 0.96204 1.21904 1.00730 1.00433 0.96849 1.21907 1.00729 1.00440 0.96854 1.21158 0.92003 0.84637 1.00366 1.44303 1.03113 1.05790 1.86055 1.17461 0.83351 0.93232 1.02381 1.20158 0.91896 0.96902 1.08297 1.20013 0.94623 0.94277 1.07962 1.18956 0.84074 0.92932 0.97581 1.83572 1.17916 1.29647 1.82398 1.20703 0.94062 0.80217 1.50957 0.87982 1.24421 0.96937 0.96793 0.96106 1.69666 1.17639 1.16502 1.49051 0.86184 0.79724 0.81982 0.78988 1.20094 1.21041 1.18458 1.21102 0.92203 0.99981 1.06186 1.20278 0.95200 0.93990 1.07325 0.92429 0.92432 0.92959 0.91796 0.91799 0.92516 0.92444 0.92549 0.92542 0.92446 0.92513 0.93104 0.93116 0.77476 0.87068 0.86629 0.91348 0.84943 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.21 37.16 0.34 -0.65 16 2 C -0.11 -0.82 4.99 -26.74 -0.13 -0.96 16 3 C -0.08 -0.63 0.56 -154.51 -0.09 -0.72 16 4 C -0.14 -1.17 7.95 37.16 0.30 -0.87 16 5 C -0.14 -1.17 7.95 37.16 0.30 -0.88 16 6 C 0.14 1.56 3.80 -4.04 -0.02 1.55 16 7 N -0.76 -9.87 5.14 -58.58 -0.30 -10.17 16 8 C 0.13 2.28 6.66 -83.71 -0.56 1.72 16 9 C -0.15 -2.64 9.31 -39.40 -0.37 -3.01 16 10 C -0.15 -3.04 9.98 -39.42 -0.39 -3.43 16 11 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 12 O -0.23 -6.22 8.58 -0.04 0.00 -6.22 16 13 C -0.38 -11.11 9.94 30.87 0.31 -10.81 16 14 H 0.10 3.01 5.43 -52.49 -0.28 2.73 16 15 C 0.06 1.70 5.49 -17.52 -0.10 1.61 16 16 N -0.89 -26.42 13.96 55.48 0.77 -25.65 16 17 Si 0.91 22.36 28.62 -169.99 -4.86 17.49 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.18 -3.87 9.16 -39.42 -0.36 -4.23 16 22 C -0.15 -2.70 9.89 -39.40 -0.39 -3.09 16 23 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 24 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 33 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 34 H 0.05 0.58 7.96 -51.93 -0.41 0.17 16 35 H 0.05 0.58 7.94 -51.92 -0.41 0.16 16 36 H 0.39 4.58 6.18 -40.82 -0.25 4.33 16 37 H 0.11 1.67 6.73 -52.49 -0.35 1.32 16 38 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.13 3.07 5.63 -52.49 -0.30 2.78 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -30.13 323.58 -7.09 -37.21 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.15 Total: 3.74 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -1.42 Total: -21.28 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.47 Total: -35.82 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.13 -7.09 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394580224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.208 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds