Wall clock time and date at job start Mon Mar 30 2020 07:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47078 * 2 1 4 4 C 1.53000 * 109.47381 * 60.00451 * 3 2 1 5 5 C 1.53002 * 109.47137 * 299.99830 * 3 2 1 6 6 C 1.53005 * 109.46948 * 180.02562 * 3 2 1 7 7 N 1.46504 * 109.46985 * 180.02562 * 6 3 2 8 8 C 1.39778 * 119.99947 * 180.02562 * 7 6 3 9 9 C 1.38954 * 120.00597 * 359.72192 * 8 7 6 10 10 C 1.38011 * 119.99321 * 179.72738 * 9 8 7 11 11 C 1.38904 * 120.00463 * 0.54662 * 10 9 8 12 12 O 1.35796 * 119.99265 * 179.70533 * 11 10 9 13 13 C 1.34810 * 117.00141 * 174.47908 * 12 11 10 14 14 H 1.08002 * 119.99416 * 5.05671 * 13 12 11 15 15 C 1.38613 * 120.00469 * 185.05687 * 13 12 11 16 16 N 1.31583 * 120.00273 * 180.02562 * 15 13 12 17 17 Si 1.86809 * 119.99825 * 0.02562 * 15 13 12 18 18 H 1.48490 * 109.47151 * 89.99946 * 17 15 13 19 19 H 1.48496 * 109.46835 * 210.00120 * 17 15 13 20 20 H 1.48504 * 109.46934 * 329.99632 * 17 15 13 21 21 C 1.38893 * 120.00989 * 359.72458 * 11 10 9 22 22 C 1.38014 * 120.00952 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.47476 * 299.99902 * 1 2 3 24 24 H 1.08997 * 109.47458 * 60.00207 * 1 2 3 25 25 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46789 * 239.99810 * 2 1 3 27 27 H 1.09000 * 109.47204 * 120.00245 * 2 1 3 28 28 H 1.09001 * 109.47065 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46677 * 299.99878 * 4 3 2 30 30 H 1.08996 * 109.47475 * 59.99305 * 4 3 2 31 31 H 1.08999 * 109.47265 * 300.00518 * 5 3 2 32 32 H 1.09004 * 109.46929 * 60.00117 * 5 3 2 33 33 H 1.09001 * 109.47202 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.47433 * 60.00104 * 6 3 2 35 35 H 1.09009 * 109.46794 * 299.99726 * 6 3 2 36 36 H 0.96998 * 119.99805 * 359.97438 * 7 6 3 37 37 H 1.08000 * 120.00063 * 359.97438 * 9 8 7 38 38 H 1.08001 * 119.99718 * 180.25216 * 10 9 8 39 39 H 0.96999 * 119.99560 * 179.97438 * 16 15 13 40 40 H 1.08000 * 119.99236 * 179.97438 * 21 11 10 41 41 H 1.07998 * 120.00261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4424 -0.0006 7 7 4.0583 2.8237 0.0000 8 6 5.4326 3.0791 -0.0010 9 6 6.3356 2.0230 0.0033 10 6 7.6924 2.2755 -0.0033 11 6 8.1553 3.5851 -0.0028 12 8 9.4904 3.8332 -0.0033 13 6 9.8737 5.1206 -0.1184 14 1 9.1326 5.9062 -0.1225 15 6 11.2187 5.4359 -0.2313 16 7 11.5928 6.6925 -0.3431 17 14 12.5004 4.0769 -0.2249 18 1 12.7454 3.6210 -1.6167 19 1 13.7655 4.5925 0.3571 20 1 12.0090 2.9369 0.5902 21 6 7.2528 4.6409 -0.0014 22 6 5.8959 4.3890 0.0000 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8930 3.1915 1.2490 29 1 0.4400 2.1637 1.2493 30 1 1.8933 1.6499 2.1392 31 1 1.8932 1.6498 -2.1393 32 1 0.4399 2.1637 -1.2493 33 1 1.8929 3.1915 -1.2491 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9284 0.8892 36 1 3.4280 3.5609 0.0003 37 1 5.9757 1.0048 0.0078 38 1 8.3944 1.4547 -0.0041 39 1 12.5341 6.9131 -0.4218 40 1 7.6130 5.6590 -0.0006 41 1 5.1942 5.2100 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394580224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:08 Heat of formation + Delta-G solvation = -32.185590 kcal Electronic energy + Delta-G solvation = -19395.248618 eV Core-core repulsion = 16467.605318 eV Total energy + Delta-G solvation = -2927.643300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86223 -39.69953 -38.24263 -35.10082 -34.23151 -31.86642 -31.16828 -29.07157 -28.15829 -27.65851 -26.48164 -24.22181 -23.42640 -22.06627 -19.83182 -19.32763 -19.05906 -17.98472 -16.82413 -16.03331 -15.92685 -15.81389 -15.54535 -15.27211 -15.15912 -15.04519 -14.41959 -14.26622 -14.05468 -13.84732 -13.68074 -13.16329 -12.93977 -12.92804 -12.75592 -12.68280 -12.49704 -12.35064 -11.98248 -11.92480 -11.43034 -11.37100 -11.32121 -11.17468 -10.96122 -10.25095 -9.79351 -8.42921 -7.95599 -6.10545 0.56820 0.89690 1.33613 1.38540 1.55302 2.33411 2.67722 2.85405 3.17972 3.30973 3.77480 3.90667 3.92748 4.12792 4.17073 4.44115 4.45649 4.56894 4.63229 4.67560 4.72774 4.78221 4.80069 4.91207 4.94148 5.08597 5.11603 5.17702 5.20487 5.23182 5.24320 5.28869 5.33733 5.50124 5.55106 5.61399 5.63199 5.84943 5.86912 6.15565 6.62820 6.92931 7.02009 7.73580 8.69583 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052745 B = 0.003372 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.729050 B = 8301.388381 C = 8626.145739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.068 4.068 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.137 3.863 7 N -0.742 5.742 8 C 0.162 3.838 9 C -0.149 4.149 10 C -0.141 4.141 11 C 0.065 3.935 12 O -0.255 6.255 13 C -0.391 4.391 14 H 0.077 0.923 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.263 1.263 21 C -0.186 4.186 22 C -0.153 4.153 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.400 0.600 37 H 0.146 0.854 38 H 0.128 0.872 39 H 0.282 0.718 40 H 0.107 0.893 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.808 -13.749 0.664 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.068 4.068 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.013 3.987 7 N -0.377 5.377 8 C 0.060 3.940 9 C -0.171 4.171 10 C -0.161 4.161 11 C 0.016 3.984 12 O -0.164 6.164 13 C -0.468 4.468 14 H 0.095 0.905 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.206 4.206 22 C -0.176 4.176 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.237 0.763 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.503 -13.968 0.666 26.495 hybrid contribution 0.699 0.687 -0.046 0.982 sum -21.804 -13.281 0.620 25.538 Atomic orbital electron populations 1.21863 0.94969 1.01957 1.02279 1.21495 0.96717 0.94258 1.02370 1.20717 0.92726 0.96926 0.96435 1.21908 1.01615 0.99869 0.96518 1.21912 1.01618 0.99869 0.96531 1.21388 0.93859 0.82918 1.00573 1.44437 1.01564 1.07569 1.84114 1.17586 0.85198 0.92428 0.98800 1.20490 0.90688 0.98744 1.07194 1.20291 0.96208 0.93118 1.06482 1.19449 0.83187 0.94804 1.00943 1.83500 1.19982 1.28026 1.84859 1.20675 0.94103 0.80948 1.51036 0.90526 1.25260 0.98882 0.99200 0.95995 1.69755 1.18403 1.18279 1.50992 0.85191 0.77328 0.78751 0.79262 1.19210 1.19416 1.18756 1.21061 0.93878 0.98609 1.07047 1.20448 0.93991 0.95803 1.07317 0.92215 0.92239 0.92386 0.91675 0.91649 0.93160 0.91199 0.92828 0.92859 0.91196 0.93169 0.92822 0.92785 0.76345 0.83614 0.85396 0.90859 0.87502 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 71.98 0.66 -0.82 16 2 C -0.11 -1.26 4.99 30.59 0.15 -1.11 16 3 C -0.07 -0.91 0.56 -52.18 -0.03 -0.94 16 4 C -0.14 -1.88 7.95 71.98 0.57 -1.31 16 5 C -0.14 -1.90 7.95 71.98 0.57 -1.33 16 6 C 0.14 2.47 3.80 86.38 0.33 2.80 16 7 N -0.74 -16.84 5.14 -339.24 -1.74 -18.59 16 8 C 0.16 5.05 6.66 38.21 0.25 5.30 16 9 C -0.15 -4.81 9.31 22.39 0.21 -4.60 16 10 C -0.14 -5.62 9.98 22.38 0.22 -5.39 16 11 C 0.06 3.14 6.65 22.59 0.15 3.29 16 12 O -0.25 -14.39 8.58 -23.05 -0.20 -14.58 16 13 C -0.39 -23.88 9.94 67.91 0.68 -23.20 16 14 H 0.08 4.90 5.43 -2.91 -0.02 4.88 16 15 C 0.00 0.20 5.49 84.82 0.47 0.67 16 16 N -0.93 -57.51 13.96 21.61 0.30 -57.21 16 17 Si 0.97 47.10 28.62 68.60 1.96 49.06 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 21 C -0.19 -8.51 9.16 22.37 0.20 -8.30 16 22 C -0.15 -5.52 9.89 22.39 0.22 -5.29 16 23 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 24 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.73 6.86 -2.39 -0.02 0.71 16 29 H 0.07 0.77 6.43 -2.38 -0.02 0.75 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.78 6.43 -2.38 -0.02 0.76 16 33 H 0.05 0.73 6.86 -2.39 -0.02 0.72 16 34 H 0.05 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.05 1.00 7.94 -2.38 -0.02 0.98 16 36 H 0.40 8.03 6.18 -92.71 -0.57 7.46 16 37 H 0.15 3.72 6.73 -2.91 -0.02 3.71 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.28 15.98 8.31 -92.71 -0.77 15.20 16 40 H 0.11 5.36 5.63 -2.91 -0.02 5.34 16 41 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.55 323.58 5.44 -62.11 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.45 Total: 19.44 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 4.66 Total: -40.23 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.44 Total: -75.80 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.20 Total: -14.58 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.96 Total: 49.06 kcal Total: -67.55 5.44 -62.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394580224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.929 kcal (2) G-P(sol) polarization free energy of solvation -67.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds