Wall clock time and date at job start Mon Mar 30 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.52995 * 109.47574 * 60.00035 * 3 2 1 5 5 C 1.53003 * 109.47201 * 299.99995 * 3 2 1 6 6 C 1.52997 * 109.47002 * 180.02562 * 3 2 1 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 3 2 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 3 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.09004 * 109.47042 * 60.00337 * 1 2 3 24 24 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47271 * 300.00138 * 1 2 3 26 26 H 1.08998 * 109.46718 * 240.00323 * 2 1 3 27 27 H 1.08996 * 109.47233 * 119.99960 * 2 1 3 28 28 H 1.09000 * 109.47450 * 179.97438 * 4 3 2 29 29 H 1.09009 * 109.47230 * 300.00154 * 4 3 2 30 30 H 1.09007 * 109.47006 * 59.99324 * 4 3 2 31 31 H 1.09002 * 109.47166 * 300.00080 * 5 3 2 32 32 H 1.08998 * 109.47173 * 59.99849 * 5 3 2 33 33 H 1.09000 * 109.47237 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.47564 * 59.99608 * 6 3 2 35 35 H 1.09004 * 109.46627 * 299.99484 * 6 3 2 36 36 H 0.96996 * 120.00220 * 359.97438 * 7 6 3 37 37 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 40 40 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8238 0.0000 8 6 5.4315 3.0791 0.0001 9 6 6.3356 2.0232 0.0002 10 6 7.6939 2.2751 0.0009 11 6 8.1582 3.5765 -0.0043 12 6 7.2600 4.6361 0.0015 13 8 7.7172 5.9143 0.0022 14 6 6.7976 6.8935 -0.1138 15 1 5.7457 6.6485 -0.1196 16 6 7.2022 8.2149 -0.2257 17 7 8.4835 8.5134 -0.2182 18 14 5.9280 9.5714 -0.3871 19 1 5.0455 9.5663 0.8072 20 1 6.6136 10.8847 -0.4899 21 1 5.1122 9.3415 -1.6065 22 6 5.8949 4.3869 0.0001 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8937 3.1914 1.2494 29 1 0.4400 2.1638 1.2492 30 1 1.8933 1.6499 2.1392 31 1 1.8933 1.6499 -2.1393 32 1 0.4400 2.1637 -1.2493 33 1 1.8936 3.1913 -1.2495 34 1 3.9330 0.9288 -0.8907 35 1 3.9336 0.9286 0.8892 36 1 3.4280 3.5611 0.0003 37 1 5.9757 1.0049 -0.0002 38 1 8.3944 1.4531 0.0014 39 1 9.2207 3.7701 -0.0085 40 1 8.7665 9.4378 -0.2961 41 1 5.1947 5.2091 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394588906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:11 Heat of formation + Delta-G solvation = -19.501287 kcal Electronic energy + Delta-G solvation = -19646.632519 eV Core-core repulsion = 16719.539251 eV Total energy + Delta-G solvation = -2927.093267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.28787 -38.42764 -36.54508 -33.98640 -32.13864 -30.58081 -29.08317 -27.97724 -27.43592 -26.24136 -25.18774 -23.28111 -21.66546 -20.45443 -18.76771 -17.76797 -17.35449 -15.89254 -15.15330 -15.14436 -14.79412 -14.53068 -14.32347 -14.06069 -13.76608 -13.47443 -13.35935 -12.81207 -12.60976 -12.35824 -12.25800 -12.13586 -11.95198 -11.59323 -11.39873 -11.24722 -10.91548 -10.80245 -10.71970 -10.66755 -10.62218 -10.47827 -10.32986 -9.34126 -9.31287 -8.71300 -7.29061 -6.69694 -6.36916 -3.96140 2.44069 2.63712 3.16369 3.18263 3.20332 3.85507 4.03062 4.55797 4.61994 4.65421 4.76801 5.06724 5.17119 5.19948 5.26465 5.41769 5.42982 5.53756 5.60197 5.67826 5.73866 5.77509 5.80630 5.86989 5.87876 5.92872 6.00429 6.06168 6.25404 6.25972 6.33916 6.42378 6.71478 6.71909 7.10695 7.19978 7.44784 7.54699 7.73518 8.09401 8.09989 8.28010 9.09212 9.82622 10.81570 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.004557 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.303820 B = 6142.361202 C = 7271.929755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.076 4.076 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.142 3.858 7 N -0.751 5.751 8 C 0.250 3.750 9 C -0.279 4.279 10 C -0.040 4.040 11 C -0.238 4.238 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.389 4.389 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.866 5.866 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.303 4.303 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.393 0.607 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.269 0.731 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -13.952 0.232 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.200 4.200 5 C -0.201 4.201 6 C 0.017 3.983 7 N -0.384 5.384 8 C 0.148 3.852 9 C -0.302 4.302 10 C -0.059 4.059 11 C -0.259 4.259 12 C 0.135 3.865 13 O -0.083 6.083 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.166 4.166 17 N -0.501 5.501 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.327 4.327 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.228 0.772 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.856 -13.831 0.236 19.579 hybrid contribution -0.914 0.952 -0.082 1.323 sum -14.770 -12.879 0.154 19.597 Atomic orbital electron populations 1.21875 0.95781 1.01399 1.02139 1.21497 0.96039 0.95209 1.02144 1.20785 0.94560 0.95987 0.96286 1.21917 1.00782 1.00556 0.96784 1.21918 1.00780 1.00565 0.96787 1.21202 0.92049 0.84435 1.00584 1.44591 1.03676 1.06195 1.83959 1.17476 0.82886 0.93010 0.91801 1.20070 0.92849 0.96398 1.20900 1.20373 0.94405 0.95119 0.96026 1.20030 0.98538 0.90827 1.16457 1.19063 0.91213 0.85975 0.90218 1.83986 1.35600 1.10073 1.78592 1.21244 0.88492 0.84794 1.51990 0.89300 1.25257 0.97131 0.97405 0.96758 1.70035 1.14101 1.19521 1.46463 0.85818 0.79400 0.79331 0.79062 1.19629 1.20324 1.19618 1.20492 0.95896 0.94772 1.21559 0.92405 0.92983 0.92414 0.91816 0.91818 0.92419 0.92378 0.92544 0.92538 0.92381 0.92415 0.92851 0.92862 0.77155 0.87946 0.87286 0.86982 0.92109 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.21 37.16 0.34 -0.77 16 2 C -0.11 -0.90 4.99 -26.73 -0.13 -1.04 16 3 C -0.08 -0.73 0.56 -154.51 -0.09 -0.81 16 4 C -0.14 -1.37 7.95 37.16 0.30 -1.08 16 5 C -0.14 -1.38 7.95 37.16 0.30 -1.08 16 6 C 0.14 1.73 3.80 -4.04 -0.02 1.71 16 7 N -0.75 -11.40 5.13 -58.65 -0.30 -11.71 16 8 C 0.25 4.80 6.65 -83.81 -0.56 4.25 16 9 C -0.28 -5.14 9.31 -39.33 -0.37 -5.51 16 10 C -0.04 -0.77 10.03 -39.64 -0.40 -1.16 16 11 C -0.24 -5.32 9.99 -39.36 -0.39 -5.71 16 12 C 0.19 4.79 6.64 -39.14 -0.26 4.53 16 13 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 14 C -0.39 -11.16 9.49 30.88 0.29 -10.86 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -25.94 13.67 55.48 0.76 -25.19 16 18 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.30 -6.87 9.01 -39.20 -0.35 -7.23 16 23 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.61 6.86 -51.93 -0.36 0.26 16 29 H 0.06 0.49 6.43 -51.92 -0.33 0.15 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.06 0.62 6.86 -51.93 -0.36 0.26 16 34 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 35 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.39 5.66 6.17 -40.82 -0.25 5.41 16 37 H 0.10 1.63 6.73 -52.49 -0.35 1.28 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 2.79 5.64 -52.49 -0.30 2.49 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -31.01 324.71 -7.25 -38.25 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.14 Total: 6.91 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.43 Total: -23.78 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.46 Total: -36.89 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.01 -7.25 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394588906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.751 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds