Wall clock time and date at job start Mon Mar 30 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.52995 * 109.47574 * 60.00035 * 3 2 1 5 5 C 1.53003 * 109.47201 * 299.99995 * 3 2 1 6 6 C 1.52997 * 109.47002 * 180.02562 * 3 2 1 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 3 2 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 3 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.09004 * 109.47042 * 60.00337 * 1 2 3 24 24 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47271 * 300.00138 * 1 2 3 26 26 H 1.08998 * 109.46718 * 240.00323 * 2 1 3 27 27 H 1.08996 * 109.47233 * 119.99960 * 2 1 3 28 28 H 1.09000 * 109.47450 * 179.97438 * 4 3 2 29 29 H 1.09009 * 109.47230 * 300.00154 * 4 3 2 30 30 H 1.09007 * 109.47006 * 59.99324 * 4 3 2 31 31 H 1.09002 * 109.47166 * 300.00080 * 5 3 2 32 32 H 1.08998 * 109.47173 * 59.99849 * 5 3 2 33 33 H 1.09000 * 109.47237 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.47564 * 59.99608 * 6 3 2 35 35 H 1.09004 * 109.46627 * 299.99484 * 6 3 2 36 36 H 0.96996 * 120.00220 * 359.97438 * 7 6 3 37 37 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 40 40 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8238 0.0000 8 6 5.4315 3.0791 0.0001 9 6 6.3356 2.0232 0.0002 10 6 7.6939 2.2751 0.0009 11 6 8.1582 3.5765 -0.0043 12 6 7.2600 4.6361 0.0015 13 8 7.7172 5.9143 0.0022 14 6 6.7976 6.8935 -0.1138 15 1 5.7457 6.6485 -0.1196 16 6 7.2022 8.2149 -0.2257 17 7 8.4835 8.5134 -0.2182 18 14 5.9280 9.5714 -0.3871 19 1 5.0455 9.5663 0.8072 20 1 6.6136 10.8847 -0.4899 21 1 5.1122 9.3415 -1.6065 22 6 5.8949 4.3869 0.0001 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8937 3.1914 1.2494 29 1 0.4400 2.1638 1.2492 30 1 1.8933 1.6499 2.1392 31 1 1.8933 1.6499 -2.1393 32 1 0.4400 2.1637 -1.2493 33 1 1.8936 3.1913 -1.2495 34 1 3.9330 0.9288 -0.8907 35 1 3.9336 0.9286 0.8892 36 1 3.4280 3.5611 0.0003 37 1 5.9757 1.0049 -0.0002 38 1 8.3944 1.4531 0.0014 39 1 9.2207 3.7701 -0.0085 40 1 8.7665 9.4378 -0.2961 41 1 5.1947 5.2091 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394588906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:11 Heat of formation + Delta-G solvation = -37.813024 kcal Electronic energy + Delta-G solvation = -19647.426575 eV Core-core repulsion = 16719.539251 eV Total energy + Delta-G solvation = -2927.887324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82811 -39.66843 -38.15227 -35.34488 -34.16990 -31.57722 -30.59944 -29.42562 -28.20269 -27.33507 -27.16447 -24.16710 -23.35896 -22.02079 -19.92469 -19.40728 -18.95562 -17.37168 -16.74514 -16.24314 -15.99317 -15.96745 -15.61833 -15.48073 -15.11908 -15.03699 -14.40517 -14.36129 -14.06176 -13.64394 -13.49493 -13.00518 -12.90374 -12.83766 -12.71337 -12.48144 -12.46077 -12.20879 -12.05893 -12.01113 -11.50707 -11.39307 -11.32878 -11.25399 -10.91757 -10.58826 -9.09338 -8.44891 -8.20371 -6.13432 0.77363 0.93576 1.33750 1.45730 1.50519 2.18909 2.59486 2.89973 3.27794 3.60421 3.73009 3.87222 3.90019 4.22417 4.39723 4.42472 4.44080 4.60632 4.64201 4.68709 4.74299 4.74993 4.79229 4.87111 5.04182 5.04799 5.10116 5.14202 5.15903 5.16708 5.18216 5.26463 5.31846 5.48390 5.51793 5.59607 5.76266 5.81458 6.05186 6.12833 6.62752 6.87818 7.00282 7.83839 8.78666 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.004557 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.303820 B = 6142.361202 C = 7271.929755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.068 4.068 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.137 3.863 7 N -0.741 5.741 8 C 0.256 3.744 9 C -0.265 4.265 10 C -0.026 4.026 11 C -0.263 4.263 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.412 4.412 15 H 0.098 0.902 16 C -0.024 4.024 17 N -0.923 5.923 18 Si 1.018 2.982 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.318 4.318 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.106 0.894 40 H 0.272 0.728 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 -16.387 0.157 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.068 4.068 4 C -0.200 4.200 5 C -0.200 4.200 6 C 0.013 3.987 7 N -0.371 5.371 8 C 0.151 3.849 9 C -0.288 4.288 10 C -0.044 4.044 11 C -0.284 4.284 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.115 0.885 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.837 3.163 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.342 4.342 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.570 -16.339 0.163 23.272 hybrid contribution -0.181 1.355 -0.045 1.368 sum -16.751 -14.984 0.118 22.475 Atomic orbital electron populations 1.21866 0.94946 1.02057 1.02221 1.21481 0.96722 0.93796 1.02581 1.20734 0.92663 0.97236 0.96209 1.21921 1.01740 0.99616 0.96753 1.21922 1.01742 0.99618 0.96763 1.21466 0.93918 0.82301 1.01019 1.44751 1.02122 1.08061 1.82210 1.17575 0.85017 0.91893 0.90373 1.20545 0.92404 0.97788 1.18025 1.20825 0.95659 0.94570 0.93383 1.20259 0.98151 0.91865 1.18161 1.19632 0.93054 0.85365 0.91768 1.83946 1.36840 1.11753 1.81361 1.21748 0.89081 0.85524 1.52466 0.88457 1.26586 0.99659 0.99865 0.95973 1.70188 1.16692 1.20270 1.48949 0.84666 0.76424 0.75411 0.79791 1.18193 1.19475 1.18252 1.20502 0.94802 0.96256 1.22684 0.92329 0.92116 0.92323 0.91407 0.91390 0.93856 0.90989 0.92562 0.92583 0.90987 0.93863 0.92272 0.92250 0.76740 0.84194 0.83050 0.87592 0.91879 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.21 71.98 0.66 -1.03 16 2 C -0.11 -1.38 4.99 30.60 0.15 -1.23 16 3 C -0.07 -1.10 0.56 -52.18 -0.03 -1.13 16 4 C -0.14 -2.39 7.95 71.98 0.57 -1.82 16 5 C -0.14 -2.40 7.95 71.98 0.57 -1.83 16 6 C 0.14 2.87 3.80 86.38 0.33 3.19 16 7 N -0.74 -20.94 5.13 -339.47 -1.74 -22.69 16 8 C 0.26 9.44 6.65 38.20 0.25 9.70 16 9 C -0.26 -8.86 9.31 22.43 0.21 -8.65 16 10 C -0.03 -0.92 10.03 22.23 0.22 -0.70 16 11 C -0.26 -11.99 9.99 22.42 0.22 -11.77 16 12 C 0.15 8.08 6.64 22.56 0.15 8.23 16 13 O -0.23 -14.65 9.76 -22.78 -0.22 -14.87 16 14 C -0.41 -24.91 9.49 67.92 0.64 -24.27 16 15 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 17 N -0.92 -58.15 13.67 21.61 0.30 -57.85 16 18 Si 1.02 43.96 29.55 68.60 2.03 45.98 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 C -0.32 -14.73 9.01 22.52 0.20 -14.53 16 23 H 0.06 0.64 6.43 -2.38 -0.02 0.63 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.64 6.43 -2.39 -0.02 0.63 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.84 6.86 -2.39 -0.02 0.83 16 29 H 0.07 1.01 6.43 -2.38 -0.02 0.99 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.01 6.43 -2.39 -0.02 1.00 16 33 H 0.04 0.85 6.86 -2.39 -0.02 0.83 16 34 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 35 H 0.06 1.23 7.95 -2.38 -0.02 1.21 16 36 H 0.40 10.91 6.17 -92.71 -0.57 10.33 16 37 H 0.14 3.70 6.73 -2.91 -0.02 3.68 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 Total: -1.00 -71.73 324.71 5.44 -66.29 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.45 Total: 29.90 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.63 Total: -46.77 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.45 Total: -80.54 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.22 Total: -14.87 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.73 5.44 -66.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394588906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.476 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds