Wall clock time and date at job start Mon Mar 30 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00211 * 2 1 4 4 C 1.38817 * 120.01608 * 0.02562 * 3 2 1 5 5 C 1.38172 * 120.09091 * 179.97438 * 4 3 2 6 6 C 1.38158 * 120.13171 * 359.78850 * 5 4 3 7 7 C 1.50693 * 119.98327 * 180.23267 * 6 5 4 8 8 C 1.38933 * 120.02949 * 0.46690 * 6 5 4 9 9 N 1.39675 * 120.04084 * 179.79018 * 8 6 5 10 10 C 1.46502 * 119.99286 * 179.72250 * 9 8 6 11 11 C 1.53004 * 109.46437 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46910 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46890 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86789 * 119.99915 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47050 * 90.00536 * 18 16 14 20 20 H 1.48498 * 109.47401 * 210.00023 * 18 16 14 21 21 H 1.48501 * 109.47316 * 330.00258 * 18 16 14 22 22 C 1.38569 * 120.02040 * 179.97438 * 3 2 1 23 23 H 1.08992 * 109.47000 * 299.99919 * 1 2 3 24 24 H 1.09000 * 109.47015 * 59.99820 * 1 2 3 25 25 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.95179 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.93607 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46989 * 270.23221 * 7 6 5 29 29 H 1.08996 * 109.47211 * 30.23168 * 7 6 5 30 30 H 1.08998 * 109.47028 * 150.23612 * 7 6 5 31 31 H 0.96995 * 120.00164 * 359.44675 * 9 8 6 32 32 H 1.08997 * 109.47359 * 299.99108 * 10 9 8 33 33 H 1.08997 * 109.47233 * 60.00377 * 10 9 8 34 34 H 1.08992 * 109.47421 * 299.99839 * 11 10 9 35 35 H 1.08999 * 109.47459 * 60.00479 * 11 10 9 36 36 H 1.08992 * 109.47085 * 300.00258 * 12 11 10 37 37 H 1.08999 * 109.46457 * 60.00079 * 12 11 10 38 38 H 1.09000 * 109.47301 * 299.99746 * 13 12 11 39 39 H 1.08999 * 109.47498 * 60.00714 * 13 12 11 40 40 H 0.97000 * 120.00242 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.06396 * 0.04294 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9160 3.6072 0.0011 6 6 3.2954 3.6844 0.0055 7 6 3.9744 5.0297 0.0114 8 6 4.0569 2.5224 -0.0004 9 7 5.4515 2.6002 -0.0004 10 6 6.2534 1.3741 -0.0004 11 6 7.7398 1.7371 -0.0010 12 6 8.5774 0.4567 -0.0005 13 6 10.0637 0.8196 -0.0004 14 6 10.8887 -0.4415 -0.0005 15 1 10.4016 -1.4054 -0.0001 16 6 12.2654 -0.3647 0.0001 17 7 12.9853 -1.4653 -0.0005 18 14 13.1078 1.3024 0.0002 19 1 13.3305 1.7444 1.4003 20 1 14.4135 1.1974 -0.6992 21 1 12.2491 2.2910 -0.7002 22 6 3.4298 1.2838 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2118 2.3182 0.0005 27 1 1.3256 4.5116 0.0019 28 1 4.1375 5.3589 -1.0149 29 1 3.3439 5.7527 0.5289 30 1 4.9329 4.9507 0.5242 31 1 5.8889 3.4659 -0.0043 32 1 6.0224 0.7888 0.8895 33 1 6.0223 0.7889 -0.8905 34 1 7.9706 2.3222 -0.8911 35 1 7.9712 2.3225 0.8888 36 1 8.3465 -0.1281 0.8898 37 1 8.3460 -0.1291 -0.8901 38 1 10.2949 1.4046 -0.8906 39 1 10.2947 1.4052 0.8894 40 1 13.9538 -1.4113 -0.0005 41 1 4.0193 0.3789 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395434262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:54 Heat of formation + Delta-G solvation = -35.304607 kcal Electronic energy + Delta-G solvation = -18835.396182 eV Core-core repulsion = 15907.617632 eV Total energy + Delta-G solvation = -2927.778551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30007 -38.40203 -36.17184 -34.13399 -32.35903 -32.09366 -30.16046 -28.60972 -27.39370 -25.99496 -24.89630 -22.50902 -21.24766 -20.93061 -20.08403 -18.35098 -16.78299 -16.58088 -15.87619 -15.64100 -15.36969 -15.22752 -14.92802 -14.20270 -13.99850 -13.68685 -13.47336 -13.17801 -12.74463 -12.59667 -12.37034 -12.13274 -11.93273 -11.86218 -11.58400 -11.51027 -11.04350 -10.98353 -10.78071 -10.69395 -9.95498 -9.87750 -9.73116 -9.57966 -9.17973 -8.53704 -8.30496 -7.38697 -6.04045 -4.02016 1.40554 1.55324 3.06473 3.30277 3.37678 3.41054 3.55750 3.77483 4.45166 4.69250 4.88557 4.94617 4.95404 5.01352 5.11298 5.21838 5.25933 5.27457 5.31568 5.38867 5.51713 5.59656 5.64980 5.75215 5.82341 5.98760 6.02354 6.19979 6.22667 6.34879 6.47581 6.56190 6.57017 6.65020 6.88890 7.22423 7.29629 7.40946 7.42668 7.71176 7.80112 8.54514 9.01287 9.58502 11.09556 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.003105 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.360790 B = 9016.368953 C = 9919.072114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.167 3.833 4 C -0.269 4.269 5 C -0.036 4.036 6 C -0.203 4.203 7 C -0.100 4.100 8 C 0.258 3.742 9 N -0.740 5.740 10 C 0.120 3.880 11 C -0.132 4.132 12 C -0.099 4.099 13 C -0.014 4.014 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.230 4.230 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.400 0.600 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.139 10.897 -0.032 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.121 3.879 4 C -0.289 4.289 5 C -0.055 4.055 6 C -0.208 4.208 7 C -0.157 4.157 8 C 0.152 3.848 9 N -0.368 5.368 10 C -0.004 4.004 11 C -0.170 4.170 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.254 4.254 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.237 0.763 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.742 10.439 -0.031 26.854 hybrid contribution 0.487 1.166 0.019 1.264 sum -24.255 11.605 -0.012 26.888 Atomic orbital electron populations 1.23011 0.78607 1.03635 1.01267 1.86061 1.21200 1.27351 1.88553 1.18652 0.91617 0.83840 0.93794 1.20885 0.99430 0.92219 1.16409 1.20480 0.93053 0.96725 0.95263 1.19263 0.93537 0.93875 1.14082 1.20515 0.99931 0.93585 1.01636 1.17300 0.83797 0.92353 0.91310 1.44979 1.02067 1.09063 1.80737 1.21549 0.91042 0.86488 1.01332 1.21891 0.92483 1.00524 1.02057 1.21383 0.96351 0.94575 1.01439 1.19569 0.91870 0.97514 0.96160 1.21175 0.91043 0.93026 1.50663 0.91028 1.25054 0.97547 0.96411 0.94616 1.69920 1.05868 1.27313 1.51253 0.86756 0.78878 0.85043 0.78454 1.20336 1.21418 1.19058 1.19756 0.91715 0.97079 1.16813 0.92749 0.92757 0.88477 0.86138 0.86191 0.91974 0.91836 0.92365 0.76322 0.92048 0.92060 0.91887 0.91906 0.92533 0.92503 0.96693 0.97130 0.92756 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.80 10.49 -19.41 -0.20 -4.01 16 3 C 0.17 2.10 6.68 -39.25 -0.26 1.84 16 4 C -0.27 -2.90 9.04 -39.39 -0.36 -3.26 16 5 C -0.04 -0.38 9.69 -39.63 -0.38 -0.76 16 6 C -0.20 -2.29 5.90 -104.40 -0.62 -2.90 16 7 C -0.10 -0.88 9.56 36.00 0.34 -0.54 16 8 C 0.26 3.30 6.63 -83.81 -0.56 2.75 16 9 N -0.74 -9.05 5.63 -58.65 -0.33 -9.38 16 10 C 0.12 1.59 4.91 -4.04 -0.02 1.57 16 11 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 12 C -0.10 -1.90 5.15 -26.73 -0.14 -2.03 16 13 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 14 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 C -0.23 -3.10 9.25 -39.24 -0.36 -3.46 16 23 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.12 1.02 6.29 -52.49 -0.33 0.69 16 27 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 31 H 0.40 4.35 6.47 -40.82 -0.26 4.09 16 32 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 33 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.13 1.78 6.73 -52.49 -0.35 1.42 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.99 332.74 -8.10 -40.09 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.64 Total: 0.14 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.04 Total: -21.64 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.44 Total: -36.77 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.20 Total: -4.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.99 -8.10 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395434262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.788 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds