Wall clock time and date at job start Mon Mar 30 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00211 * 2 1 4 4 C 1.38817 * 120.01608 * 0.02562 * 3 2 1 5 5 C 1.38172 * 120.09091 * 179.97438 * 4 3 2 6 6 C 1.38158 * 120.13171 * 359.78850 * 5 4 3 7 7 C 1.50693 * 119.98327 * 180.23267 * 6 5 4 8 8 C 1.38933 * 120.02949 * 0.46690 * 6 5 4 9 9 N 1.39675 * 120.04084 * 179.79018 * 8 6 5 10 10 C 1.46502 * 119.99286 * 179.72250 * 9 8 6 11 11 C 1.53004 * 109.46437 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46910 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46890 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86789 * 119.99915 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47050 * 90.00536 * 18 16 14 20 20 H 1.48498 * 109.47401 * 210.00023 * 18 16 14 21 21 H 1.48501 * 109.47316 * 330.00258 * 18 16 14 22 22 C 1.38569 * 120.02040 * 179.97438 * 3 2 1 23 23 H 1.08992 * 109.47000 * 299.99919 * 1 2 3 24 24 H 1.09000 * 109.47015 * 59.99820 * 1 2 3 25 25 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.95179 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.93607 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46989 * 270.23221 * 7 6 5 29 29 H 1.08996 * 109.47211 * 30.23168 * 7 6 5 30 30 H 1.08998 * 109.47028 * 150.23612 * 7 6 5 31 31 H 0.96995 * 120.00164 * 359.44675 * 9 8 6 32 32 H 1.08997 * 109.47359 * 299.99108 * 10 9 8 33 33 H 1.08997 * 109.47233 * 60.00377 * 10 9 8 34 34 H 1.08992 * 109.47421 * 299.99839 * 11 10 9 35 35 H 1.08999 * 109.47459 * 60.00479 * 11 10 9 36 36 H 1.08992 * 109.47085 * 300.00258 * 12 11 10 37 37 H 1.08999 * 109.46457 * 60.00079 * 12 11 10 38 38 H 1.09000 * 109.47301 * 299.99746 * 13 12 11 39 39 H 1.08999 * 109.47498 * 60.00714 * 13 12 11 40 40 H 0.97000 * 120.00242 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.06396 * 0.04294 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9160 3.6072 0.0011 6 6 3.2954 3.6844 0.0055 7 6 3.9744 5.0297 0.0114 8 6 4.0569 2.5224 -0.0004 9 7 5.4515 2.6002 -0.0004 10 6 6.2534 1.3741 -0.0004 11 6 7.7398 1.7371 -0.0010 12 6 8.5774 0.4567 -0.0005 13 6 10.0637 0.8196 -0.0004 14 6 10.8887 -0.4415 -0.0005 15 1 10.4016 -1.4054 -0.0001 16 6 12.2654 -0.3647 0.0001 17 7 12.9853 -1.4653 -0.0005 18 14 13.1078 1.3024 0.0002 19 1 13.3305 1.7444 1.4003 20 1 14.4135 1.1974 -0.6992 21 1 12.2491 2.2910 -0.7002 22 6 3.4298 1.2838 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2118 2.3182 0.0005 27 1 1.3256 4.5116 0.0019 28 1 4.1375 5.3589 -1.0149 29 1 3.3439 5.7527 0.5289 30 1 4.9329 4.9507 0.5242 31 1 5.8889 3.4659 -0.0043 32 1 6.0224 0.7888 0.8895 33 1 6.0223 0.7889 -0.8905 34 1 7.9706 2.3222 -0.8911 35 1 7.9712 2.3225 0.8888 36 1 8.3465 -0.1281 0.8898 37 1 8.3460 -0.1291 -0.8901 38 1 10.2949 1.4046 -0.8906 39 1 10.2947 1.4052 0.8894 40 1 13.9538 -1.4113 -0.0005 41 1 4.0193 0.3789 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395434262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:54 Heat of formation + Delta-G solvation = -54.573239 kcal Electronic energy + Delta-G solvation = -18836.231733 eV Core-core repulsion = 15907.617632 eV Total energy + Delta-G solvation = -2928.614101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13854 -39.26422 -37.35516 -35.66997 -34.13985 -32.98162 -31.46786 -29.75031 -28.28634 -26.77054 -26.37037 -23.83739 -22.19745 -22.13375 -21.55559 -19.26542 -18.79955 -17.58031 -16.71616 -16.52798 -16.47525 -16.35081 -16.13114 -15.73287 -15.05111 -14.79825 -14.51974 -14.34181 -14.26927 -13.75302 -13.34723 -13.26314 -13.24297 -12.96035 -12.71454 -12.47608 -12.39976 -12.25871 -11.84743 -11.75605 -11.68893 -11.44519 -11.37968 -11.27168 -10.79352 -10.76391 -9.18775 -8.29641 -8.27973 -6.34135 0.54044 0.68018 1.36026 1.38268 1.50415 2.26859 2.36533 2.65985 2.90713 3.05777 3.93150 3.95755 4.09462 4.18143 4.22597 4.32076 4.34604 4.42900 4.52787 4.55633 4.61299 4.70231 4.74240 4.80525 4.85787 4.88537 4.90478 5.11794 5.12997 5.17113 5.17611 5.36638 5.49844 5.54567 5.62711 5.65596 5.67648 5.77680 6.28106 6.30621 6.57591 6.74624 6.84740 7.30650 8.87512 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.003105 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.360790 B = 9016.368953 C = 9919.072114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.343 6.343 3 C 0.151 3.849 4 C -0.268 4.268 5 C -0.038 4.038 6 C -0.209 4.209 7 C -0.099 4.099 8 C 0.243 3.757 9 N -0.737 5.737 10 C 0.130 3.870 11 C -0.117 4.117 12 C -0.094 4.094 13 C -0.012 4.012 14 C -0.536 4.536 15 H 0.029 0.971 16 C -0.001 4.001 17 N -0.955 5.955 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.243 1.243 22 C -0.257 4.257 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.408 0.592 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.647 14.151 -0.008 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.105 3.895 4 C -0.288 4.288 5 C -0.056 4.056 6 C -0.213 4.213 7 C -0.155 4.155 8 C 0.137 3.863 9 N -0.368 5.368 10 C 0.006 3.994 11 C -0.154 4.154 12 C -0.133 4.133 13 C -0.049 4.049 14 C -0.574 4.574 15 H 0.047 0.953 16 C -0.197 4.197 17 N -0.595 5.595 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.167 1.167 22 C -0.280 4.280 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.132 0.868 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.246 0.754 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.289 13.703 -0.007 29.646 hybrid contribution 0.839 0.023 0.013 0.839 sum -25.450 13.727 0.005 28.916 Atomic orbital electron populations 1.23305 0.76422 1.05258 1.02331 1.86026 1.23580 1.27500 1.88581 1.18849 0.91609 0.84776 0.94224 1.21197 1.00622 0.91740 1.15256 1.20884 0.93031 0.97690 0.94014 1.19613 0.94101 0.94361 1.13258 1.20561 1.00115 0.92532 1.02332 1.17471 0.83947 0.92754 0.92106 1.44798 1.01959 1.08794 1.81218 1.21282 0.90245 0.87011 1.00874 1.21675 0.92536 0.98192 1.03028 1.21245 0.94521 0.96672 1.00839 1.19538 0.93707 0.95063 0.96623 1.21582 0.91955 0.93593 1.50308 0.95300 1.26114 0.98415 1.01104 0.94098 1.70086 1.06387 1.30268 1.52798 0.85575 0.77693 0.79622 0.79239 1.19097 1.21093 1.16660 1.19864 0.92552 0.97091 1.18528 0.91615 0.91624 0.86759 0.83806 0.83235 0.91299 0.90171 0.92244 0.75428 0.92647 0.92676 0.90909 0.90854 0.93249 0.93261 0.96038 0.96150 0.92518 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.13 10.49 -92.38 -0.97 -9.10 16 3 C 0.15 3.76 6.68 22.49 0.15 3.91 16 4 C -0.27 -5.25 9.04 22.39 0.20 -5.05 16 5 C -0.04 -0.68 9.69 22.24 0.22 -0.47 16 6 C -0.21 -4.28 5.90 -19.72 -0.12 -4.40 16 7 C -0.10 -1.47 9.56 71.23 0.68 -0.79 16 8 C 0.24 6.01 6.63 38.20 0.25 6.27 16 9 N -0.74 -17.23 5.63 -339.46 -1.91 -19.15 16 10 C 0.13 3.41 4.91 86.38 0.42 3.83 16 11 C -0.12 -3.30 5.33 30.60 0.16 -3.14 16 12 C -0.09 -3.60 5.15 30.59 0.16 -3.44 16 13 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 14 C -0.54 -31.54 9.66 25.60 0.25 -31.29 16 15 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 16 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 17 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.96 44.49 27.47 68.60 1.88 46.38 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 22 C -0.26 -7.03 9.25 22.49 0.21 -6.82 16 23 H 0.07 0.71 7.66 -2.39 -0.02 0.70 16 24 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.14 2.03 6.29 -2.91 -0.02 2.02 16 27 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.92 8.09 -2.39 -0.02 0.91 16 30 H 0.06 0.87 6.55 -2.39 -0.02 0.85 16 31 H 0.41 8.08 6.47 -92.71 -0.60 7.48 16 32 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 33 H 0.05 1.50 7.95 -2.39 -0.02 1.48 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 39 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.12 3.35 6.73 -2.91 -0.02 3.33 16 Total: -1.00 -70.69 332.74 3.93 -66.75 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.35 Total: 15.86 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 4.28 Total: -40.03 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.61 Total: -79.87 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.97 Total: -9.10 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -70.69 3.93 -66.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395434262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.181 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds