Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36017 * 117.00243 * 2 1 4 4 C 1.38507 * 120.07603 * 359.72109 * 3 2 1 5 5 C 1.38286 * 120.01358 * 180.25601 * 4 3 2 6 6 C 1.38246 * 120.18428 * 0.04534 * 5 4 3 7 7 C 1.50698 * 119.92451 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.15972 * 359.95472 * 6 5 4 9 9 C 1.38721 * 119.97910 * 0.02562 * 8 6 5 10 10 N 1.39967 * 120.09075 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99646 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46821 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47471 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00376 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00187 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46928 * 59.99870 * 19 17 15 21 21 H 1.48494 * 109.47443 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47076 * 300.00353 * 19 17 15 23 23 H 1.09003 * 109.47278 * 300.00632 * 1 2 3 24 24 H 1.08999 * 109.46845 * 60.00149 * 1 2 3 25 25 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99298 * 0.25261 * 4 3 2 27 27 H 1.08007 * 119.90524 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.97630 * 7 6 5 29 29 H 1.09003 * 109.46566 * 29.97662 * 7 6 5 30 30 H 1.09002 * 109.47531 * 149.97492 * 7 6 5 31 31 H 1.07997 * 120.01097 * 180.02562 * 8 6 5 32 32 H 0.96996 * 119.99995 * 180.02562 * 10 9 8 33 33 H 1.08996 * 109.47327 * 299.99816 * 11 10 9 34 34 H 1.09004 * 109.47205 * 60.00473 * 11 10 9 35 35 H 1.09000 * 109.47284 * 300.00069 * 12 11 10 36 36 H 1.09004 * 109.47017 * 60.00147 * 12 11 10 37 37 H 1.09000 * 109.47224 * 300.00270 * 13 12 11 38 38 H 1.09004 * 109.46912 * 60.00247 * 13 12 11 39 39 H 1.09000 * 109.47221 * 300.00275 * 14 13 12 40 40 H 1.08993 * 109.47359 * 60.00442 * 14 13 12 41 41 H 0.97003 * 119.99972 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0058 5 6 1.9230 3.6059 -0.0112 6 6 3.3034 3.6812 -0.0117 7 6 3.9830 5.0262 -0.0181 8 6 4.0619 2.5256 -0.0059 9 6 3.4377 1.2867 -0.0001 10 7 4.2034 0.1151 0.0053 11 6 5.6661 0.1961 0.0053 12 6 6.2551 -1.2160 0.0110 13 6 7.7827 -1.1315 0.0104 14 6 8.3717 -2.5435 0.0167 15 6 9.8764 -2.4603 0.0168 16 1 10.3639 -1.4965 0.0131 17 6 10.6307 -3.6144 0.0226 18 7 10.0371 -4.7879 0.0276 19 14 12.4959 -3.5111 0.0219 20 1 12.9515 -2.7787 1.2307 21 1 13.0675 -4.8816 0.0282 22 1 12.9513 -2.7909 -1.1942 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2152 2.3194 -0.0063 27 1 1.3343 4.5115 -0.0153 28 1 4.1471 5.3454 -1.0473 29 1 3.3523 5.7543 0.4920 30 1 4.9411 4.9517 0.4964 31 1 5.1401 2.5871 -0.0058 32 1 3.7656 -0.7504 0.0089 33 1 6.0008 0.7253 -0.8869 34 1 6.0003 0.7331 0.8931 35 1 5.9205 -1.7456 0.9030 36 1 5.9209 -1.7526 -0.8770 37 1 8.1170 -0.6020 -0.8818 38 1 8.1173 -0.5947 0.8982 39 1 8.0374 -3.0726 0.9092 40 1 8.0373 -3.0806 -0.8707 41 1 10.5678 -5.5998 0.0320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395455695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -39.663972 kcal Electronic energy + Delta-G solvation = -18850.752878 eV Core-core repulsion = 15922.785291 eV Total energy + Delta-G solvation = -2927.967587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28065 -37.79133 -36.41935 -34.22700 -32.40893 -31.68626 -29.87909 -27.98498 -27.73307 -25.92945 -24.68683 -22.49710 -21.30746 -20.93937 -20.03437 -18.13793 -16.85713 -16.16496 -15.87757 -15.84496 -15.16549 -14.86806 -14.45234 -14.23772 -14.04925 -13.80108 -13.66294 -13.14804 -12.54301 -12.32578 -12.26957 -12.02993 -11.77415 -11.64697 -11.34766 -11.22143 -11.01536 -10.92157 -10.70681 -10.55816 -10.46632 -9.88533 -9.66434 -9.30536 -9.05168 -8.42283 -8.33244 -7.09110 -5.98427 -4.00909 1.37926 1.58508 3.19723 3.34280 3.38515 3.40993 3.61427 3.80185 4.47218 4.73297 4.83611 4.92959 4.99778 5.14103 5.25450 5.27904 5.32254 5.36955 5.42472 5.46367 5.53604 5.61473 5.74382 5.82291 5.88876 6.10666 6.11810 6.17147 6.31386 6.40903 6.65486 6.75059 6.78779 6.88360 7.07157 7.17923 7.57139 7.69004 7.83933 7.90753 8.01929 8.44370 9.06246 9.63078 11.12939 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.003057 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.811000 B = 9157.444026 C =10114.599035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.041 3.959 4 C -0.159 4.159 5 C -0.151 4.151 6 C -0.072 4.072 7 C -0.110 4.110 8 C -0.173 4.173 9 C 0.207 3.793 10 N -0.740 5.740 11 C 0.124 3.876 12 C -0.129 4.129 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.404 0.596 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 15.716 -0.090 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C -0.007 4.007 4 C -0.178 4.178 5 C -0.172 4.172 6 C -0.072 4.072 7 C -0.167 4.167 8 C -0.196 4.196 9 C 0.102 3.898 10 N -0.370 5.370 11 C 0.000 4.000 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.239 0.761 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.978 15.348 -0.089 24.408 hybrid contribution 0.562 -0.296 -0.003 0.636 sum -18.416 15.052 -0.091 23.784 Atomic orbital electron populations 1.22940 0.78830 1.03510 1.00888 1.85983 1.20900 1.26710 1.90034 1.18444 0.90404 0.84783 1.07096 1.20912 0.99253 0.91913 1.05750 1.20487 0.93741 0.96600 1.06347 1.19557 0.93372 0.94792 0.99519 1.20736 1.00346 0.93523 1.02094 1.20401 0.99826 0.89684 1.09681 1.17247 0.87082 0.88075 0.97372 1.44784 1.05282 1.05431 1.81495 1.21501 0.78721 0.99082 1.00658 1.21850 0.98289 0.94312 1.02204 1.21558 0.91043 1.01403 1.00468 1.19087 0.95173 0.90138 0.97195 1.21242 0.91838 0.92342 1.50573 0.92736 1.25032 0.98614 0.95499 0.95361 1.69957 1.35474 0.97281 1.50870 0.86657 0.85724 0.76998 0.78615 1.20238 1.21303 1.20241 0.93069 0.93061 0.88584 0.85890 0.86527 0.91398 0.91827 0.91633 0.85350 0.76079 0.92524 0.92519 0.91893 0.91896 0.93195 0.93201 0.96645 0.96643 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -3.97 9.74 -19.80 -0.19 -4.16 16 3 C 0.04 0.53 6.70 -39.08 -0.26 0.27 16 4 C -0.16 -1.76 9.04 -39.46 -0.36 -2.12 16 5 C -0.15 -1.62 9.69 -39.56 -0.38 -2.01 16 6 C -0.07 -0.81 5.88 -104.62 -0.62 -1.42 16 7 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 8 C -0.17 -2.21 8.96 -39.41 -0.35 -2.57 16 9 C 0.21 2.88 6.67 -83.56 -0.56 2.32 16 10 N -0.74 -10.45 5.73 -58.49 -0.34 -10.78 16 11 C 0.12 1.79 4.92 -4.04 -0.02 1.77 16 12 C -0.13 -2.15 5.33 -26.73 -0.14 -2.29 16 13 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 14 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 24 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 27 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.13 1.56 6.74 -52.49 -0.35 1.21 16 32 H 0.40 5.64 7.84 -40.82 -0.32 5.32 16 33 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 34 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.41 338.84 -8.54 -39.96 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.81 Total: 0.60 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.03 Total: -21.00 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.40 Total: -37.32 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.19 Total: -4.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.41 -8.54 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.293 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds