Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36017 * 117.00243 * 2 1 4 4 C 1.38507 * 120.07603 * 359.72109 * 3 2 1 5 5 C 1.38286 * 120.01358 * 180.25601 * 4 3 2 6 6 C 1.38246 * 120.18428 * 0.04534 * 5 4 3 7 7 C 1.50698 * 119.92451 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.15972 * 359.95472 * 6 5 4 9 9 C 1.38721 * 119.97910 * 0.02562 * 8 6 5 10 10 N 1.39967 * 120.09075 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99646 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46821 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47471 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00376 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00187 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46928 * 59.99870 * 19 17 15 21 21 H 1.48494 * 109.47443 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47076 * 300.00353 * 19 17 15 23 23 H 1.09003 * 109.47278 * 300.00632 * 1 2 3 24 24 H 1.08999 * 109.46845 * 60.00149 * 1 2 3 25 25 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99298 * 0.25261 * 4 3 2 27 27 H 1.08007 * 119.90524 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.97630 * 7 6 5 29 29 H 1.09003 * 109.46566 * 29.97662 * 7 6 5 30 30 H 1.09002 * 109.47531 * 149.97492 * 7 6 5 31 31 H 1.07997 * 120.01097 * 180.02562 * 8 6 5 32 32 H 0.96996 * 119.99995 * 180.02562 * 10 9 8 33 33 H 1.08996 * 109.47327 * 299.99816 * 11 10 9 34 34 H 1.09004 * 109.47205 * 60.00473 * 11 10 9 35 35 H 1.09000 * 109.47284 * 300.00069 * 12 11 10 36 36 H 1.09004 * 109.47017 * 60.00147 * 12 11 10 37 37 H 1.09000 * 109.47224 * 300.00270 * 13 12 11 38 38 H 1.09004 * 109.46912 * 60.00247 * 13 12 11 39 39 H 1.09000 * 109.47221 * 300.00275 * 14 13 12 40 40 H 1.08993 * 109.47359 * 60.00442 * 14 13 12 41 41 H 0.97003 * 119.99972 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0058 5 6 1.9230 3.6059 -0.0112 6 6 3.3034 3.6812 -0.0117 7 6 3.9830 5.0262 -0.0181 8 6 4.0619 2.5256 -0.0059 9 6 3.4377 1.2867 -0.0001 10 7 4.2034 0.1151 0.0053 11 6 5.6661 0.1961 0.0053 12 6 6.2551 -1.2160 0.0110 13 6 7.7827 -1.1315 0.0104 14 6 8.3717 -2.5435 0.0167 15 6 9.8764 -2.4603 0.0168 16 1 10.3639 -1.4965 0.0131 17 6 10.6307 -3.6144 0.0226 18 7 10.0371 -4.7879 0.0276 19 14 12.4959 -3.5111 0.0219 20 1 12.9515 -2.7787 1.2307 21 1 13.0675 -4.8816 0.0282 22 1 12.9513 -2.7909 -1.1942 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2152 2.3194 -0.0063 27 1 1.3343 4.5115 -0.0153 28 1 4.1471 5.3454 -1.0473 29 1 3.3523 5.7543 0.4920 30 1 4.9411 4.9517 0.4964 31 1 5.1401 2.5871 -0.0058 32 1 3.7656 -0.7504 0.0089 33 1 6.0008 0.7253 -0.8869 34 1 6.0003 0.7331 0.8931 35 1 5.9205 -1.7456 0.9030 36 1 5.9209 -1.7526 -0.8770 37 1 8.1170 -0.6020 -0.8818 38 1 8.1173 -0.5947 0.8982 39 1 8.0374 -3.0726 0.9092 40 1 8.0373 -3.0806 -0.8707 41 1 10.5678 -5.5998 0.0320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395455695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -57.570143 kcal Electronic energy + Delta-G solvation = -18851.529348 eV Core-core repulsion = 15922.785291 eV Total energy + Delta-G solvation = -2928.744057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14847 -38.67092 -37.61050 -35.89486 -34.19184 -32.59199 -31.22587 -29.17185 -28.68740 -26.82342 -26.25428 -23.92107 -22.33794 -22.13669 -21.54134 -19.01809 -18.43701 -17.68929 -16.85793 -16.73572 -16.50645 -16.43834 -15.76417 -15.13627 -14.89061 -14.83580 -14.52741 -14.44658 -14.32141 -13.68862 -13.31453 -13.15557 -12.90879 -12.86654 -12.71418 -12.42675 -12.39260 -12.33429 -12.17228 -11.78592 -11.70542 -11.45260 -11.33541 -11.07810 -10.85342 -10.55125 -9.30005 -8.20178 -8.06119 -6.31676 0.49722 0.68973 1.39889 1.43276 1.51170 2.36361 2.41643 2.62912 2.91530 3.12826 3.91315 4.00685 4.08417 4.09511 4.23877 4.37251 4.43289 4.43830 4.53937 4.59690 4.66910 4.74771 4.77793 4.80682 4.83495 4.92265 5.00146 5.16946 5.17632 5.25955 5.26910 5.30759 5.46699 5.53088 5.75956 5.80230 5.85951 5.96506 6.19395 6.24964 6.63657 6.85608 6.87376 7.37787 8.91625 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.003057 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.811000 B = 9157.444026 C =10114.599035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.026 3.974 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.080 4.080 7 C -0.109 4.109 8 C -0.186 4.186 9 C 0.179 3.821 10 N -0.747 5.747 11 C 0.139 3.861 12 C -0.117 4.117 13 C -0.094 4.094 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.062 0.938 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.266 1.266 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.402 0.598 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.056 0.944 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 17.812 -0.098 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.259 6.259 3 C -0.022 4.022 4 C -0.180 4.180 5 C -0.171 4.171 6 C -0.081 4.081 7 C -0.165 4.165 8 C -0.209 4.209 9 C 0.076 3.924 10 N -0.377 5.377 11 C 0.015 3.985 12 C -0.155 4.155 13 C -0.132 4.132 14 C -0.015 4.015 15 C -0.584 4.584 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.165 0.835 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.236 0.764 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.378 17.476 -0.097 26.095 hybrid contribution 0.566 -0.936 -0.001 1.094 sum -18.811 16.541 -0.098 25.049 Atomic orbital electron populations 1.23208 0.76858 1.04950 1.01914 1.85954 1.23051 1.26786 1.90116 1.18665 0.90400 0.85678 1.07437 1.21244 1.00502 0.91444 1.04780 1.20876 0.93820 0.97496 1.04872 1.19920 0.93911 0.95448 0.98800 1.20779 1.00493 0.92377 1.02878 1.20584 1.00129 0.90057 1.10105 1.17529 0.87834 0.88130 0.98945 1.44657 1.04872 1.05687 1.82518 1.21242 0.79221 0.97037 1.01046 1.21644 0.95894 0.96070 1.01847 1.21349 0.93193 0.97671 1.01031 1.19017 0.94714 0.93057 0.94669 1.21727 0.93271 0.92858 1.50514 0.91981 1.26024 1.04273 0.95030 0.94726 1.70099 1.37623 0.98112 1.51732 0.85485 0.78931 0.77284 0.79270 1.19057 1.20877 1.19071 0.91972 0.91963 0.87111 0.83511 0.83912 0.90563 0.90180 0.91552 0.85366 0.76361 0.92136 0.92125 0.92296 0.92301 0.92558 0.92567 0.99201 0.99198 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -8.32 9.74 -93.75 -0.91 -9.23 16 3 C 0.03 0.66 6.70 22.59 0.15 0.81 16 4 C -0.16 -3.25 9.04 22.35 0.20 -3.05 16 5 C -0.15 -2.86 9.69 22.28 0.22 -2.65 16 6 C -0.08 -1.67 5.88 -19.86 -0.12 -1.78 16 7 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 8 C -0.19 -4.64 8.96 22.38 0.20 -4.44 16 9 C 0.18 4.94 6.67 38.22 0.25 5.19 16 10 N -0.75 -21.22 5.73 -338.97 -1.94 -23.17 16 11 C 0.14 3.96 4.92 86.38 0.42 4.39 16 12 C -0.12 -3.95 5.33 30.60 0.16 -3.79 16 13 C -0.09 -3.85 5.15 30.59 0.16 -3.70 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 24 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 25 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.15 2.14 6.30 -2.91 -0.02 2.13 16 27 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.13 3.07 6.74 -2.91 -0.02 3.05 16 32 H 0.40 11.47 7.84 -92.71 -0.73 10.75 16 33 H 0.06 1.68 7.95 -2.39 -0.02 1.66 16 34 H 0.06 1.68 7.95 -2.38 -0.02 1.66 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.01 338.84 4.05 -63.96 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.27 Total: 17.56 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 4.32 Total: -38.14 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.66 Total: -80.88 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.91 Total: -9.23 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.01 4.05 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.391 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds