Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00094 * 2 1 4 4 C 1.38210 * 119.99873 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99924 * 359.74724 * 4 3 2 6 6 C 1.38213 * 120.00334 * 0.50637 * 5 4 3 7 7 C 1.50696 * 120.00371 * 179.76463 * 6 5 4 8 8 H 1.08999 * 109.47125 * 159.72534 * 7 6 5 9 9 C 1.53005 * 109.47272 * 279.73173 * 7 6 5 10 10 N 1.46906 * 109.46885 * 39.72695 * 7 6 5 11 11 C 1.46902 * 110.99573 * 155.00031 * 10 7 6 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 7 13 13 O 1.42900 * 109.47139 * 65.00304 * 12 11 10 14 14 C 1.42896 * 113.99930 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47067 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00415 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99767 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47410 * 59.99876 * 19 17 15 21 21 H 1.48505 * 109.47290 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47218 * 299.99564 * 19 17 15 23 23 C 1.38217 * 119.99750 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46859 * 270.02595 * 1 2 3 25 25 H 1.08998 * 109.47116 * 30.02247 * 1 2 3 26 26 H 1.09003 * 109.47311 * 150.02325 * 1 2 3 27 27 H 1.07998 * 120.00040 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99937 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99876 * 180.26944 * 5 4 3 30 30 H 1.09002 * 109.46644 * 299.99733 * 9 7 6 31 31 H 1.08999 * 109.47115 * 59.99349 * 9 7 6 32 32 H 1.09000 * 109.47030 * 180.02562 * 9 7 6 33 33 H 1.00896 * 111.00309 * 31.04442 * 10 7 6 34 34 H 1.08990 * 109.47358 * 299.99539 * 11 10 7 35 35 H 1.09004 * 109.47457 * 60.00221 * 11 10 7 36 36 H 1.09007 * 109.46775 * 185.00154 * 12 11 10 37 37 H 1.09003 * 109.47223 * 304.99930 * 12 11 10 38 38 H 1.09002 * 109.46714 * 299.99500 * 14 13 12 39 39 H 1.08996 * 109.47413 * 59.99182 * 14 13 12 40 40 H 0.97001 * 120.00141 * 180.02562 * 18 17 15 41 41 H 1.07992 * 119.99868 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0020 8 1 3.6793 -3.2994 0.3537 9 6 4.8066 -2.8193 -1.4182 10 7 5.4974 -2.3952 0.8927 11 6 5.9026 -3.7167 1.3903 12 6 7.1146 -3.5649 2.3118 13 8 6.7396 -2.8222 3.4736 14 6 7.8051 -2.6222 4.4045 15 6 7.2997 -1.8326 5.5844 16 1 6.2682 -1.5150 5.6196 17 6 8.1546 -1.5149 6.6184 18 7 9.4110 -1.9013 6.5753 19 14 7.5283 -0.5356 8.0806 20 1 6.4277 -1.2820 8.7415 21 1 8.6356 -0.3278 9.0482 22 1 7.0237 0.7812 7.6150 23 6 2.1980 -1.1970 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 -0.0001 0.0112 30 1 3.9434 -2.8986 -2.0791 31 1 5.4613 -2.0220 -1.7699 32 1 5.3512 -3.7635 -1.4175 33 1 5.3112 -1.7627 1.6564 34 1 5.0781 -4.1646 1.9447 35 1 6.1648 -4.3573 0.5482 36 1 7.4699 -4.5513 2.6101 37 1 7.9087 -3.0371 1.7837 38 1 8.1751 -3.5888 4.7463 39 1 8.6133 -2.0747 3.9196 40 1 10.0124 -1.6781 7.3029 41 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395503868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = -40.674250 kcal Electronic energy + Delta-G solvation = -19206.619674 eV Core-core repulsion = 16278.608278 eV Total energy + Delta-G solvation = -2928.011396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67315 -37.32306 -35.99596 -32.99456 -32.54126 -31.77590 -29.46128 -27.89245 -26.96759 -26.44638 -23.38474 -22.32267 -22.04992 -21.22194 -19.75189 -16.75409 -16.34404 -16.00433 -15.64604 -15.29834 -15.04464 -14.52814 -14.30094 -14.03074 -13.73579 -13.55603 -13.17603 -13.06875 -12.53354 -12.37486 -12.30323 -12.06796 -11.90898 -11.57506 -11.45458 -11.22894 -10.97379 -10.83770 -10.72296 -10.69234 -10.43423 -10.00059 -9.10575 -8.81235 -8.79424 -8.57153 -8.22617 -8.15520 -6.09614 -4.11437 1.35448 1.40688 3.32912 3.35503 3.39447 3.75250 4.30655 4.36099 4.64717 4.80500 4.90450 4.95192 5.13750 5.20128 5.26749 5.31968 5.38452 5.45208 5.49537 5.56738 5.60493 5.69683 5.73583 5.78672 5.87952 6.04189 6.09321 6.11409 6.19284 6.29705 6.36100 6.51022 6.56033 6.62882 7.03174 7.12593 7.27043 7.45340 7.67007 7.80116 8.16755 8.59379 9.01568 9.53387 11.01883 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004170 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.006083 B = 6713.669934 C = 7814.167005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.082 4.082 7 C 0.122 3.878 8 H 0.048 0.952 9 C -0.133 4.133 10 N -0.680 5.680 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.198 3.802 15 C -0.515 4.515 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.116 4.116 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.358 0.642 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.264 0.736 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 1.337 -16.273 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.083 4.083 7 C 0.012 3.988 8 H 0.066 0.934 9 C -0.191 4.191 10 N -0.314 5.314 11 C -0.064 4.064 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.124 3.876 15 C -0.554 4.554 16 H 0.083 0.917 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.135 4.135 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.179 0.821 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.331 1.404 -16.635 21.364 hybrid contribution -0.531 0.187 1.474 1.578 sum -13.862 1.591 -15.161 20.604 Atomic orbital electron populations 1.20768 0.91428 1.02448 1.02265 1.19839 0.95859 0.93170 1.00339 1.21011 0.94395 0.97294 1.01557 1.21179 0.94189 0.98222 0.99897 1.21119 1.00807 0.91452 0.98618 1.19948 0.93340 0.95106 0.99869 1.20435 0.90475 0.93046 0.94852 0.93387 1.21770 1.00794 1.01921 0.94601 1.60623 1.35410 1.11569 1.23827 1.22005 0.97180 0.90702 0.96475 1.22292 0.95846 0.95499 0.87930 1.87792 1.39201 1.74210 1.30731 1.20160 0.85365 0.95429 0.86678 1.21018 0.97352 1.34296 1.02685 0.91699 1.24938 0.94722 0.96221 0.98541 1.69955 1.04282 1.46395 1.33165 0.86410 0.78254 0.80398 0.81492 1.20061 1.21134 1.19991 1.20880 0.93492 0.97480 1.01598 0.91259 0.91740 0.91751 0.86433 0.86046 0.84969 0.92879 0.91837 0.92513 0.82116 0.94765 0.90652 0.94176 0.93539 0.97859 0.97631 0.92605 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 4 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 5 C -0.10 -1.33 9.00 -39.58 -0.36 -1.69 16 6 C -0.08 -1.06 4.72 -104.63 -0.49 -1.55 16 7 C 0.12 1.54 2.82 -68.86 -0.19 1.35 16 8 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 9 C -0.13 -1.46 9.39 37.16 0.35 -1.11 16 10 N -0.68 -10.30 5.69 -107.94 -0.61 -10.91 16 11 C 0.07 1.00 5.90 -3.82 -0.02 0.98 16 12 C 0.06 1.17 6.28 37.16 0.23 1.41 16 13 O -0.40 -9.66 9.85 -35.23 -0.35 -10.01 16 14 C 0.20 5.50 5.69 36.00 0.20 5.70 16 15 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 16 16 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.12 -1.38 9.33 -39.58 -0.37 -1.74 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.13 1.77 7.71 -52.48 -0.40 1.37 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.36 6.21 7.54 -39.29 -0.30 5.92 16 34 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 35 H 0.08 0.98 7.44 -51.93 -0.39 0.59 16 36 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -31.18 342.64 -9.09 -40.27 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.90 Total: 1.40 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.11 Total: -16.53 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.12 Total: -37.33 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.18 -9.09 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395503868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.401 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds