Wall clock time and date at job start Mon Mar 30 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00094 * 2 1 4 4 C 1.38210 * 119.99873 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99924 * 359.74724 * 4 3 2 6 6 C 1.38213 * 120.00334 * 0.50637 * 5 4 3 7 7 C 1.50696 * 120.00371 * 179.76463 * 6 5 4 8 8 H 1.08999 * 109.47125 * 159.72534 * 7 6 5 9 9 C 1.53005 * 109.47272 * 279.73173 * 7 6 5 10 10 N 1.46906 * 109.46885 * 39.72695 * 7 6 5 11 11 C 1.46902 * 110.99573 * 155.00031 * 10 7 6 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 7 13 13 O 1.42900 * 109.47139 * 65.00304 * 12 11 10 14 14 C 1.42896 * 113.99930 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47067 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00415 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99767 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47410 * 59.99876 * 19 17 15 21 21 H 1.48505 * 109.47290 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47218 * 299.99564 * 19 17 15 23 23 C 1.38217 * 119.99750 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46859 * 270.02595 * 1 2 3 25 25 H 1.08998 * 109.47116 * 30.02247 * 1 2 3 26 26 H 1.09003 * 109.47311 * 150.02325 * 1 2 3 27 27 H 1.07998 * 120.00040 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99937 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99876 * 180.26944 * 5 4 3 30 30 H 1.09002 * 109.46644 * 299.99733 * 9 7 6 31 31 H 1.08999 * 109.47115 * 59.99349 * 9 7 6 32 32 H 1.09000 * 109.47030 * 180.02562 * 9 7 6 33 33 H 1.00896 * 111.00309 * 31.04442 * 10 7 6 34 34 H 1.08990 * 109.47358 * 299.99539 * 11 10 7 35 35 H 1.09004 * 109.47457 * 60.00221 * 11 10 7 36 36 H 1.09007 * 109.46775 * 185.00154 * 12 11 10 37 37 H 1.09003 * 109.47223 * 304.99930 * 12 11 10 38 38 H 1.09002 * 109.46714 * 299.99500 * 14 13 12 39 39 H 1.08996 * 109.47413 * 59.99182 * 14 13 12 40 40 H 0.97001 * 120.00141 * 180.02562 * 18 17 15 41 41 H 1.07992 * 119.99868 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0020 8 1 3.6793 -3.2994 0.3537 9 6 4.8066 -2.8193 -1.4182 10 7 5.4974 -2.3952 0.8927 11 6 5.9026 -3.7167 1.3903 12 6 7.1146 -3.5649 2.3118 13 8 6.7396 -2.8222 3.4736 14 6 7.8051 -2.6222 4.4045 15 6 7.2997 -1.8326 5.5844 16 1 6.2682 -1.5150 5.6196 17 6 8.1546 -1.5149 6.6184 18 7 9.4110 -1.9013 6.5753 19 14 7.5283 -0.5356 8.0806 20 1 6.4277 -1.2820 8.7415 21 1 8.6356 -0.3278 9.0482 22 1 7.0237 0.7812 7.6150 23 6 2.1980 -1.1970 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 -0.0001 0.0112 30 1 3.9434 -2.8986 -2.0791 31 1 5.4613 -2.0220 -1.7699 32 1 5.3512 -3.7635 -1.4175 33 1 5.3112 -1.7627 1.6564 34 1 5.0781 -4.1646 1.9447 35 1 6.1648 -4.3573 0.5482 36 1 7.4699 -4.5513 2.6101 37 1 7.9087 -3.0371 1.7837 38 1 8.1751 -3.5888 4.7463 39 1 8.6133 -2.0747 3.9196 40 1 10.0124 -1.6781 7.3029 41 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395503868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:56 Heat of formation + Delta-G solvation = -59.218589 kcal Electronic energy + Delta-G solvation = -19207.423817 eV Core-core repulsion = 16278.608278 eV Total energy + Delta-G solvation = -2928.815539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59298 -38.89873 -37.36079 -34.98223 -33.69760 -32.86403 -30.56224 -29.52855 -28.28228 -27.62685 -24.62383 -24.31018 -22.96429 -22.54932 -20.69898 -18.66770 -17.69146 -17.47442 -16.93661 -16.63474 -16.46637 -16.21055 -15.48688 -15.20007 -15.06574 -14.69017 -14.41589 -13.95853 -13.87536 -13.64338 -13.37643 -13.10742 -13.00989 -12.94560 -12.80472 -12.69253 -12.61543 -12.29132 -12.25730 -11.92068 -11.80910 -11.51019 -11.29744 -10.87864 -10.24377 -9.70491 -9.46709 -9.40090 -8.33045 -6.45761 0.44393 0.50132 1.38830 1.43598 1.52053 2.33685 2.83771 3.00728 3.16018 3.23183 3.68970 3.99313 4.06317 4.18527 4.27833 4.30883 4.33276 4.49187 4.53698 4.56870 4.64631 4.75902 4.77150 4.79777 4.84613 4.91655 4.95725 4.99820 5.02779 5.16996 5.18774 5.32020 5.37060 5.53174 5.59779 5.64968 5.70227 5.94636 6.11822 6.18158 6.35893 6.52121 6.80390 7.26244 8.79173 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004170 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.006083 B = 6713.669934 C = 7814.167005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.094 4.094 7 C 0.123 3.877 8 H 0.053 0.947 9 C -0.127 4.127 10 N -0.687 5.687 11 C 0.075 3.925 12 C 0.054 3.946 13 O -0.410 6.410 14 C 0.212 3.788 15 C -0.550 4.550 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.266 1.266 23 C -0.127 4.127 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.342 0.658 34 H 0.033 0.967 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.043 0.957 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.271 0.729 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 1.720 -16.381 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.094 4.094 7 C 0.014 3.986 8 H 0.071 0.929 9 C -0.185 4.185 10 N -0.319 5.319 11 C -0.054 4.054 12 C -0.023 4.023 13 O -0.330 6.330 14 C 0.137 3.863 15 C -0.587 4.587 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.145 4.145 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.051 0.949 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.080 0.920 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.147 1.768 -16.780 22.674 hybrid contribution 0.034 0.043 1.419 1.420 sum -15.113 1.811 -15.360 21.624 Atomic orbital electron populations 1.20817 0.89298 1.03738 1.02875 1.20235 0.97516 0.92824 0.99087 1.21332 0.94169 0.98459 1.00943 1.21409 0.94955 0.98337 0.99764 1.21133 1.00383 0.92381 1.00143 1.20034 0.93990 0.94928 1.00484 1.20506 0.89705 0.93325 0.95075 0.92880 1.21729 1.01298 1.01825 0.93642 1.60673 1.36969 1.11001 1.23291 1.21974 0.95422 0.91349 0.96621 1.22608 0.97852 0.95137 0.86669 1.87757 1.38140 1.75212 1.31877 1.19774 0.85553 0.93891 0.87038 1.21354 0.97557 1.35684 1.04138 0.92102 1.25953 0.94738 0.96862 1.01547 1.70064 1.05535 1.47002 1.34374 0.85252 0.78120 0.78813 0.77335 1.19005 1.19857 1.19055 1.21122 0.93178 0.98602 1.01635 0.90842 0.90328 0.90683 0.84243 0.84852 0.86273 0.91357 0.92758 0.91801 0.83920 0.94919 0.87527 0.93243 0.93826 0.99697 0.99791 0.91997 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.10 -1.99 5.88 -19.86 -0.12 -2.10 16 3 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 4 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 5 C -0.12 -3.25 9.00 22.27 0.20 -3.05 16 6 C -0.09 -2.38 4.72 -19.87 -0.09 -2.48 16 7 C 0.12 3.02 2.82 44.17 0.12 3.15 16 8 H 0.05 1.25 7.66 -2.39 -0.02 1.24 16 9 C -0.13 -2.63 9.39 71.98 0.68 -1.95 16 10 N -0.69 -20.78 5.69 -495.42 -2.82 -23.60 16 11 C 0.08 2.25 5.90 86.31 0.51 2.76 16 12 C 0.05 2.07 6.28 71.98 0.45 2.53 16 13 O -0.41 -20.34 9.85 -148.98 -1.47 -21.80 16 14 C 0.21 12.22 5.69 71.24 0.41 12.62 16 15 C -0.55 -33.33 9.43 25.60 0.24 -33.09 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.44 5.46 84.65 0.46 0.91 16 18 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 19 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C -0.13 -2.86 9.33 22.27 0.21 -2.65 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 26 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 27 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 28 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.12 3.38 7.71 -2.91 -0.02 3.35 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.21 7.45 -2.39 -0.02 1.20 16 33 H 0.34 12.20 7.54 -89.70 -0.68 11.52 16 34 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 35 H 0.11 2.54 7.44 -2.38 -0.02 2.52 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 Total: -1.00 -67.20 342.64 2.56 -64.64 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.31 Total: 19.77 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 4.22 Total: -29.50 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.53 Total: -80.03 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.47 Total: -21.80 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.20 2.56 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395503868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.425 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds