Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00237 * 2 1 4 4 H 1.48503 * 109.47212 * 239.99737 * 3 2 1 5 5 H 1.48498 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46798 * 120.00404 * 3 2 1 7 7 C 1.37878 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.53043 * 109.45892 * 179.97438 * 9 7 2 11 11 C 1.53198 * 109.31366 * 181.37072 * 10 9 7 12 12 N 1.46927 * 108.77364 * 305.36603 * 11 10 9 13 13 C 1.34776 * 120.63016 * 233.58298 * 12 11 10 14 14 O 1.21283 * 119.99663 * 359.97438 * 13 12 11 15 15 C 1.50691 * 120.00035 * 179.97438 * 13 12 11 16 16 H 1.08996 * 110.82419 * 303.33897 * 15 13 12 17 17 C 1.54894 * 110.75805 * 179.97438 * 15 13 12 18 18 C 1.54266 * 104.31305 * 279.69542 * 17 15 13 19 19 H 1.09004 * 117.41014 * 116.29930 * 18 17 15 20 20 C 1.52992 * 118.20068 * 270.92893 * 18 17 15 21 21 C 1.53869 * 106.60031 * 336.32486 * 18 17 15 22 22 H 1.08997 * 121.33682 * 138.62994 * 21 18 17 23 23 C 1.54266 * 106.59800 * 359.97438 * 21 18 17 24 24 C 1.46930 * 118.73648 * 53.86083 * 12 11 10 25 25 C 1.53035 * 109.44906 * 300.05811 * 9 7 2 26 26 H 0.97008 * 119.99606 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46323 * 60.02899 * 9 7 2 28 28 H 1.08997 * 109.49938 * 61.41726 * 10 9 7 29 29 H 1.08997 * 109.52587 * 301.33700 * 10 9 7 30 30 H 1.08996 * 109.59048 * 185.57800 * 11 10 9 31 31 H 1.09002 * 109.58541 * 65.14892 * 11 10 9 32 32 H 1.09002 * 110.48891 * 160.94967 * 17 15 13 33 33 H 1.08998 * 110.48494 * 38.44055 * 17 15 13 34 34 H 1.09000 * 117.46829 * 201.21441 * 20 18 17 35 35 H 1.09000 * 117.46216 * 346.04841 * 20 18 17 36 36 H 1.09005 * 110.48526 * 142.29451 * 23 21 18 37 37 H 1.09006 * 110.48581 * 264.93644 * 23 21 18 38 38 H 1.08998 * 109.58958 * 65.92707 * 24 12 11 39 39 H 1.09008 * 109.58017 * 186.35150 * 24 12 11 40 40 H 1.08997 * 109.49909 * 298.57545 * 25 9 7 41 41 H 1.09005 * 109.49880 * 58.64220 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2456 -3.6622 -0.0027 11 6 1.4764 -4.9867 -0.0385 12 7 0.5222 -5.0097 1.0785 13 6 0.5114 -6.0366 1.9513 14 8 1.2940 -6.9536 1.8185 15 6 -0.4730 -6.0454 3.0922 16 1 -0.3689 -5.1471 3.7008 17 6 -0.2992 -7.3183 3.9575 18 6 -1.0451 -8.4174 3.1730 19 1 -0.4547 -9.2514 2.7933 20 6 -2.5351 -8.6216 3.4540 21 6 -2.0792 -7.7006 2.2874 22 1 -2.2573 -8.0122 1.2582 23 6 -1.9261 -6.1908 2.5650 24 6 -0.4240 -3.8949 1.2223 25 6 0.3697 -2.5798 1.2469 26 1 -0.4850 0.8401 -0.0004 27 1 0.6250 -2.5563 -0.8923 28 1 2.8556 -3.6201 0.8995 29 1 2.8884 -3.5911 -0.8801 30 1 2.1748 -5.8176 0.0604 31 1 0.9368 -5.0705 -0.9818 32 1 -0.7511 -7.1769 4.9393 33 1 0.7565 -7.5705 4.0573 34 1 -2.9697 -9.5849 3.1873 35 1 -2.9473 -8.1515 4.3469 36 1 -2.0570 -5.6188 1.6464 37 1 -2.6410 -5.8677 3.3219 38 1 -1.1155 -3.8915 0.3797 39 1 -0.9799 -4.0054 2.1534 40 1 0.9970 -2.5476 2.1376 41 1 -0.3225 -1.7378 1.2587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397196723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -35.976150 kcal Electronic energy + Delta-G solvation = -20631.271029 eV Core-core repulsion = 17703.463358 eV Total energy + Delta-G solvation = -2927.807671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67966 -39.57996 -38.14729 -35.34990 -33.57218 -32.38511 -31.47210 -29.13586 -28.08120 -25.46577 -24.15118 -23.58301 -22.29168 -20.96539 -20.59231 -19.55272 -18.51465 -17.79038 -17.23321 -16.73400 -16.48356 -16.13060 -15.18241 -14.91562 -14.71912 -14.48060 -14.27041 -13.98628 -13.82388 -13.52981 -13.22665 -13.10221 -12.80400 -12.62821 -12.45798 -12.27990 -12.20018 -12.06619 -11.92383 -11.77293 -11.47721 -11.01087 -10.98376 -10.87606 -10.68875 -10.43497 -10.34280 -9.51600 -8.07493 -6.20819 1.43118 1.43764 1.51099 1.68144 2.12252 2.44531 2.70280 3.18944 3.51510 3.62143 3.69852 3.94434 4.13281 4.25724 4.26784 4.34904 4.43489 4.47929 4.50066 4.53086 4.57080 4.66215 4.71100 4.83914 4.87563 4.93650 4.97715 5.01763 5.16640 5.20511 5.23132 5.29434 5.31918 5.40993 5.43526 5.57636 5.66201 5.98690 6.14063 6.39580 6.56376 6.87975 7.24133 7.46819 8.95701 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.004643 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.235428 B = 6029.550390 C = 6361.176720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.117 3.883 12 N -0.604 5.604 13 C 0.519 3.481 14 O -0.587 6.587 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.073 4.073 18 C -0.169 4.169 19 H 0.091 0.909 20 C -0.129 4.129 21 C -0.185 4.185 22 H 0.099 0.901 23 C -0.082 4.082 24 C 0.115 3.885 25 C -0.116 4.116 26 H 0.262 0.738 27 H 0.003 0.997 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.028 0.972 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -12.072 7.258 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.336 5.336 13 C 0.309 3.691 14 O -0.468 6.468 15 C -0.137 4.137 16 H 0.134 0.866 17 C -0.111 4.111 18 C -0.188 4.188 19 H 0.109 0.891 20 C -0.166 4.166 21 C -0.203 4.203 22 H 0.117 0.883 23 C -0.119 4.119 24 C -0.007 4.007 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.047 0.953 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.721 -12.404 7.167 15.824 hybrid contribution 0.893 1.141 -0.539 1.546 sum -5.828 -11.263 6.628 14.309 Atomic orbital electron populations 1.69933 1.06751 1.27231 1.51041 1.25602 0.95696 1.01825 0.94755 0.85777 0.78566 0.79712 0.78553 1.20102 1.20681 1.20062 1.21516 0.92863 0.92337 1.50906 0.93620 1.18602 0.93031 0.91802 0.93856 1.21846 0.98322 0.94451 1.00452 1.21541 0.92039 0.98087 0.88927 1.48262 1.35727 1.21559 1.28028 1.21007 0.84182 0.80616 0.83329 1.90591 1.43235 1.37320 1.75626 1.22581 0.94892 1.01631 0.94561 0.86649 1.21792 1.00437 0.91056 0.97802 1.23155 0.91631 1.00546 1.03418 0.89126 1.23546 0.94323 1.00277 0.98419 1.23657 1.06874 0.93288 0.96463 0.88289 1.22100 0.93204 0.94269 1.02339 1.22077 0.90886 0.85180 1.02580 1.21882 0.99345 0.96290 0.97912 0.92852 0.97910 0.94105 0.92020 0.90511 0.91501 0.88319 0.92192 0.87461 0.87118 0.90883 0.87686 0.91644 0.87945 0.95330 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.71 11.30 21.45 0.24 -49.46 16 2 C 0.02 1.09 5.30 84.66 0.45 1.54 16 3 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.04 8.56 25.60 0.22 -28.82 16 8 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 10 C -0.11 -4.70 5.30 30.68 0.16 -4.54 16 11 C 0.12 4.33 6.43 86.36 0.56 4.88 16 12 N -0.60 -21.22 2.97 -818.04 -2.43 -23.65 16 13 C 0.52 17.60 6.77 87.65 0.59 18.19 16 14 O -0.59 -23.54 14.94 -3.04 -0.05 -23.58 16 15 C -0.12 -2.90 2.46 -10.12 -0.02 -2.92 16 16 H 0.12 2.59 7.57 -2.39 -0.02 2.57 16 17 C -0.07 -1.68 5.78 31.67 0.18 -1.50 16 18 C -0.17 -3.82 6.46 -10.07 -0.07 -3.89 16 19 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 20 C -0.13 -2.12 10.21 31.44 0.32 -1.80 16 21 C -0.18 -3.97 6.86 -9.22 -0.06 -4.03 16 22 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 23 C -0.08 -1.70 5.33 31.80 0.17 -1.54 16 24 C 0.11 3.88 5.00 86.51 0.43 4.32 16 25 C -0.12 -5.04 5.17 30.82 0.16 -4.88 16 26 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.87 7.00 -2.39 -0.02 2.85 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.63 7.47 -2.39 -0.02 1.61 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.65 6.25 -2.38 -0.01 1.63 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.10 2.81 5.10 -2.38 -0.01 2.80 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 3.94 6.03 -2.38 -0.01 3.93 16 Total: -1.00 -61.73 314.94 3.86 -57.86 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.00 Total: 17.07 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.07 Total: -22.81 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -2.18 Total: -73.12 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -61.73 3.86 -57.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397196723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.885 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds