Wall clock time and date at job start Mon Mar 30 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47385 * 269.99919 * 3 2 1 5 5 H 1.48502 * 109.47289 * 30.00032 * 3 2 1 6 6 H 1.48505 * 109.47107 * 149.99780 * 3 2 1 7 7 C 1.37876 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00511 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.78011 * 303.23279 * 9 7 2 11 11 C 1.55399 * 110.85462 * 66.53637 * 9 7 2 12 12 C 1.54914 * 101.66411 * 153.70011 * 11 9 7 13 13 N 1.47419 * 104.83262 * 323.07510 * 12 11 9 14 14 C 1.34773 * 125.64513 * 204.09784 * 13 12 11 15 15 O 1.21290 * 119.99839 * 174.97155 * 14 13 12 16 16 C 1.50698 * 120.00291 * 354.96345 * 14 13 12 17 17 C 1.53003 * 109.47015 * 95.22829 * 16 14 13 18 18 C 1.53007 * 117.49438 * 248.74975 * 17 16 14 19 19 C 1.52998 * 117.49947 * 180.09080 * 17 16 14 20 20 C 1.53004 * 109.47498 * 215.22402 * 16 14 13 21 21 C 1.53002 * 117.49688 * 133.99912 * 20 16 14 22 22 C 1.52998 * 117.49540 * 65.34308 * 20 16 14 23 23 C 1.47016 * 108.70368 * 24.12836 * 13 12 11 24 24 H 0.97002 * 119.99861 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.89330 * 35.62706 * 11 9 7 26 26 H 1.09000 * 111.06636 * 271.84766 * 11 9 7 27 27 H 1.09004 * 110.36550 * 204.23143 * 12 11 9 28 28 H 1.09006 * 110.45847 * 81.96286 * 12 11 9 29 29 H 1.09004 * 109.47169 * 335.22824 * 16 14 13 30 30 H 1.08994 * 115.55362 * 34.41108 * 17 16 14 31 31 H 1.08999 * 117.50075 * 359.97438 * 18 17 16 32 32 H 1.09007 * 117.49682 * 145.02203 * 18 17 16 33 33 H 1.09004 * 117.49832 * 214.97570 * 19 17 16 34 34 H 1.08997 * 117.50204 * 359.97302 * 19 17 16 35 35 H 1.08995 * 115.54867 * 279.67051 * 20 16 14 36 36 H 1.08998 * 117.50080 * 0.02562 * 21 20 16 37 37 H 1.09001 * 117.49239 * 145.02432 * 21 20 16 38 38 H 1.09008 * 117.49701 * 214.98072 * 22 20 16 39 39 H 1.08997 * 117.50128 * 359.97438 * 22 20 16 40 40 H 1.09002 * 109.88354 * 118.36123 * 23 13 12 41 41 H 1.09004 * 109.88369 * 239.36936 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5737 -2.5546 0.8527 11 6 0.4742 -2.6894 -1.3318 12 6 0.3830 -4.2332 -1.4235 13 7 1.6691 -4.7194 -0.8916 14 6 2.2378 -5.9077 -1.1760 15 8 3.3442 -6.1674 -0.7524 16 6 1.4989 -6.9139 -2.0202 17 6 1.9357 -6.7738 -3.4799 18 6 0.9085 -6.2313 -4.4756 19 6 1.2931 -7.7127 -4.5028 20 6 1.8174 -8.3264 -1.5260 21 6 0.6459 -9.2953 -1.3530 22 6 1.3418 -8.7078 -0.1227 23 6 2.2281 -3.6937 0.0011 24 1 -0.4850 0.8401 0.0004 25 1 1.0364 -2.2807 -2.1714 26 1 -0.5181 -2.2422 -1.2741 27 1 0.2592 -4.5450 -2.4606 28 1 -0.4430 -4.6028 -0.8158 29 1 0.4264 -6.7352 -1.9431 30 1 2.9794 -6.4999 -3.6341 31 1 -0.0786 -5.9746 -4.0909 32 1 1.2765 -5.6009 -5.2852 33 1 1.9140 -8.0563 -5.3302 34 1 0.5595 -8.4305 -4.1359 35 1 2.7669 -8.7403 -1.8655 36 1 -0.3516 -8.9265 -1.5917 37 1 0.8249 -10.3466 -1.5783 38 1 1.9784 -9.3730 0.4610 39 1 0.8024 -7.9523 0.4486 40 1 2.3244 -4.0934 1.0106 41 1 3.2037 -3.3748 -0.3657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397593675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:05 Heat of formation + Delta-G solvation = 3.908064 kcal Electronic energy + Delta-G solvation = -20353.503023 eV Core-core repulsion = 17427.424862 eV Total energy + Delta-G solvation = -2926.078162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98772 -37.86479 -36.54073 -36.09370 -33.01026 -30.63733 -29.07168 -28.25757 -24.90196 -22.74051 -22.40913 -22.26350 -21.42580 -20.61834 -19.52441 -18.51566 -17.02353 -16.44861 -15.98288 -15.35033 -14.92646 -14.72266 -14.47525 -13.99169 -13.65796 -13.10570 -12.59456 -12.52601 -12.16916 -11.80144 -11.60437 -11.50868 -11.49664 -11.26790 -11.22357 -11.03303 -10.77393 -10.55200 -10.43656 -10.38787 -10.29759 -9.85420 -9.81205 -9.48683 -9.09270 -8.98196 -8.48616 -7.93811 -6.11352 -4.14237 3.06093 3.27319 3.34278 3.37667 3.46106 3.73301 3.94496 4.38661 4.53505 4.73759 4.79590 4.95954 4.96919 5.06798 5.21642 5.28439 5.33093 5.46370 5.58018 5.59743 5.63408 5.73085 5.85702 5.89034 5.90774 6.00623 6.07948 6.09072 6.13614 6.27419 6.30922 6.33895 6.67129 6.86760 7.01074 7.11944 7.43971 7.69637 7.87649 8.19113 8.28800 8.70102 8.87835 9.50658 10.98726 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.004777 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.987543 B = 5860.284835 C = 6182.223427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.042 0.958 11 C -0.110 4.110 12 C 0.090 3.910 13 N -0.609 5.609 14 C 0.531 3.469 15 O -0.551 6.551 16 C -0.041 4.041 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.170 4.170 20 C -0.123 4.123 21 C -0.179 4.179 22 C -0.175 4.175 23 C 0.110 3.890 24 H 0.261 0.739 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -14.579 -6.746 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.026 3.974 10 H 0.060 0.940 11 C -0.148 4.148 12 C -0.032 4.032 13 N -0.341 5.341 14 C 0.319 3.681 15 O -0.430 6.430 16 C -0.062 4.062 17 C -0.157 4.157 18 C -0.214 4.214 19 C -0.207 4.207 20 C -0.142 4.142 21 C -0.216 4.216 22 C -0.212 4.212 23 C -0.011 4.011 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.750 -14.649 -6.516 16.128 hybrid contribution 0.348 1.017 -0.014 1.075 sum -1.402 -13.632 -6.531 15.180 Atomic orbital electron populations 1.69940 1.05915 1.26759 1.50103 1.24946 0.94869 0.99124 0.94734 0.86569 0.79937 0.83224 0.78165 1.20637 1.21192 1.19803 1.21037 0.92925 0.89869 1.51403 0.92278 1.19755 0.92687 0.91055 0.93934 0.94016 1.22799 1.02263 0.89151 1.00612 1.22575 0.84977 0.98297 0.97379 1.48728 1.22573 1.16282 1.46540 1.19994 0.85984 0.81342 0.80827 1.90643 1.19877 1.78013 1.54455 1.20425 1.00064 0.92670 0.93035 1.21983 0.98814 1.05524 0.89399 1.23094 0.99775 0.96618 1.01922 1.22925 1.03614 0.93153 1.01008 1.21872 0.98807 0.93630 0.99847 1.23047 0.96867 0.98650 1.03063 1.22910 1.03725 1.03549 0.91013 1.22322 0.99000 0.88294 0.91510 0.92891 0.92197 0.90116 0.92008 0.92615 0.89541 0.87438 0.88528 0.88580 0.88862 0.88559 0.87219 0.88954 0.88793 0.88729 0.89013 0.93464 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 12.52 55.43 0.69 -23.70 16 2 C 0.07 1.75 5.36 -17.82 -0.10 1.66 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.69 8.47 -34.44 -0.29 -13.98 16 8 H 0.06 1.58 7.53 -52.49 -0.40 1.18 16 9 C 0.04 1.07 2.79 -89.80 -0.25 0.82 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.35 5.97 -24.45 -0.15 -2.50 16 12 C 0.09 1.58 6.17 -2.53 -0.02 1.57 16 13 N -0.61 -11.84 3.33 -170.52 -0.57 -12.40 16 14 C 0.53 9.87 6.60 -10.99 -0.07 9.80 16 15 O -0.55 -12.08 16.80 5.55 0.09 -11.99 16 16 C -0.04 -0.57 1.89 -91.77 -0.17 -0.74 16 17 C -0.14 -1.75 5.13 -90.62 -0.46 -2.21 16 18 C -0.18 -1.92 9.54 -26.69 -0.25 -2.18 16 19 C -0.17 -1.67 9.88 -26.69 -0.26 -1.94 16 20 C -0.12 -1.57 4.26 -90.62 -0.39 -1.95 16 21 C -0.18 -1.81 10.18 -26.69 -0.27 -2.09 16 22 C -0.17 -2.16 10.01 -26.70 -0.27 -2.43 16 23 C 0.11 2.44 6.45 -3.07 -0.02 2.42 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 26 H 0.08 1.81 7.80 -51.93 -0.40 1.40 16 27 H 0.06 0.94 6.39 -51.93 -0.33 0.60 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.13 6.68 -51.93 -0.35 0.78 16 30 H 0.11 1.51 8.11 -51.93 -0.42 1.09 16 31 H 0.10 1.01 7.46 -51.93 -0.39 0.62 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.41 7.63 -51.93 -0.40 1.01 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -29.01 333.66 -9.63 -38.64 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.88 Total: 2.40 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.97 Total: -13.75 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.13 Total: -36.11 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.01 -9.63 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.548 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds