Wall clock time and date at job start Mon Mar 30 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47385 * 269.99919 * 3 2 1 5 5 H 1.48502 * 109.47289 * 30.00032 * 3 2 1 6 6 H 1.48505 * 109.47107 * 149.99780 * 3 2 1 7 7 C 1.37876 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00511 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.78011 * 303.23279 * 9 7 2 11 11 C 1.55399 * 110.85462 * 66.53637 * 9 7 2 12 12 C 1.54914 * 101.66411 * 153.70011 * 11 9 7 13 13 N 1.47419 * 104.83262 * 323.07510 * 12 11 9 14 14 C 1.34773 * 125.64513 * 204.09784 * 13 12 11 15 15 O 1.21290 * 119.99839 * 174.97155 * 14 13 12 16 16 C 1.50698 * 120.00291 * 354.96345 * 14 13 12 17 17 C 1.53003 * 109.47015 * 95.22829 * 16 14 13 18 18 C 1.53007 * 117.49438 * 248.74975 * 17 16 14 19 19 C 1.52998 * 117.49947 * 180.09080 * 17 16 14 20 20 C 1.53004 * 109.47498 * 215.22402 * 16 14 13 21 21 C 1.53002 * 117.49688 * 133.99912 * 20 16 14 22 22 C 1.52998 * 117.49540 * 65.34308 * 20 16 14 23 23 C 1.47016 * 108.70368 * 24.12836 * 13 12 11 24 24 H 0.97002 * 119.99861 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.89330 * 35.62706 * 11 9 7 26 26 H 1.09000 * 111.06636 * 271.84766 * 11 9 7 27 27 H 1.09004 * 110.36550 * 204.23143 * 12 11 9 28 28 H 1.09006 * 110.45847 * 81.96286 * 12 11 9 29 29 H 1.09004 * 109.47169 * 335.22824 * 16 14 13 30 30 H 1.08994 * 115.55362 * 34.41108 * 17 16 14 31 31 H 1.08999 * 117.50075 * 359.97438 * 18 17 16 32 32 H 1.09007 * 117.49682 * 145.02203 * 18 17 16 33 33 H 1.09004 * 117.49832 * 214.97570 * 19 17 16 34 34 H 1.08997 * 117.50204 * 359.97302 * 19 17 16 35 35 H 1.08995 * 115.54867 * 279.67051 * 20 16 14 36 36 H 1.08998 * 117.50080 * 0.02562 * 21 20 16 37 37 H 1.09001 * 117.49239 * 145.02432 * 21 20 16 38 38 H 1.09008 * 117.49701 * 214.98072 * 22 20 16 39 39 H 1.08997 * 117.50128 * 359.97438 * 22 20 16 40 40 H 1.09002 * 109.88354 * 118.36123 * 23 13 12 41 41 H 1.09004 * 109.88369 * 239.36936 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5737 -2.5546 0.8527 11 6 0.4742 -2.6894 -1.3318 12 6 0.3830 -4.2332 -1.4235 13 7 1.6691 -4.7194 -0.8916 14 6 2.2378 -5.9077 -1.1760 15 8 3.3442 -6.1674 -0.7524 16 6 1.4989 -6.9139 -2.0202 17 6 1.9357 -6.7738 -3.4799 18 6 0.9085 -6.2313 -4.4756 19 6 1.2931 -7.7127 -4.5028 20 6 1.8174 -8.3264 -1.5260 21 6 0.6459 -9.2953 -1.3530 22 6 1.3418 -8.7078 -0.1227 23 6 2.2281 -3.6937 0.0011 24 1 -0.4850 0.8401 0.0004 25 1 1.0364 -2.2807 -2.1714 26 1 -0.5181 -2.2422 -1.2741 27 1 0.2592 -4.5450 -2.4606 28 1 -0.4430 -4.6028 -0.8158 29 1 0.4264 -6.7352 -1.9431 30 1 2.9794 -6.4999 -3.6341 31 1 -0.0786 -5.9746 -4.0909 32 1 1.2765 -5.6009 -5.2852 33 1 1.9140 -8.0563 -5.3302 34 1 0.5595 -8.4305 -4.1359 35 1 2.7669 -8.7403 -1.8655 36 1 -0.3516 -8.9265 -1.5917 37 1 0.8249 -10.3466 -1.5783 38 1 1.9784 -9.3730 0.4610 39 1 0.8024 -7.9523 0.4486 40 1 2.3244 -4.0934 1.0106 41 1 3.2037 -3.3748 -0.3657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397593675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:04 Heat of formation + Delta-G solvation = -10.769608 kcal Electronic energy + Delta-G solvation = -20354.139495 eV Core-core repulsion = 17427.424862 eV Total energy + Delta-G solvation = -2926.714633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35662 -39.15822 -38.03979 -37.02928 -34.96301 -32.35263 -30.42993 -29.86141 -26.80620 -24.13667 -23.48080 -23.11248 -22.35526 -21.97955 -21.16887 -19.87924 -18.74828 -18.11222 -17.09775 -16.74455 -16.51781 -16.34846 -15.68295 -15.16931 -14.79525 -14.48226 -14.42120 -14.19744 -13.69147 -13.13334 -13.07309 -12.94017 -12.75418 -12.63576 -12.47849 -12.39051 -12.32178 -12.27315 -11.65513 -11.53061 -11.39304 -11.30889 -11.20472 -10.98600 -10.74319 -10.52408 -10.47961 -9.57277 -8.17663 -6.26698 1.41373 1.43129 1.52728 1.61392 2.04375 2.42941 2.83785 2.95586 3.14351 3.51201 3.68614 3.84526 4.02606 4.06000 4.10294 4.14916 4.22635 4.29598 4.37700 4.40712 4.46160 4.51947 4.65111 4.78180 4.79080 4.82217 4.86843 5.02317 5.08079 5.10142 5.18866 5.25305 5.26158 5.31566 5.33474 5.38111 5.55648 5.74456 5.85099 6.26917 6.66522 6.78864 7.18864 7.40809 8.91826 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.004777 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.987543 B = 5860.284835 C = 6182.223427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.040 3.960 10 H 0.020 0.980 11 C -0.101 4.101 12 C 0.102 3.898 13 N -0.614 5.614 14 C 0.526 3.474 15 O -0.591 6.591 16 C -0.026 4.026 17 C -0.164 4.164 18 C -0.177 4.177 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.195 4.195 23 C 0.120 3.880 24 H 0.264 0.736 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -15.995 -8.322 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.066 0.934 9 C 0.021 3.979 10 H 0.038 0.962 11 C -0.139 4.139 12 C -0.019 4.019 13 N -0.346 5.346 14 C 0.316 3.684 15 O -0.472 6.472 16 C -0.047 4.047 17 C -0.183 4.183 18 C -0.213 4.213 19 C -0.180 4.180 20 C -0.160 4.160 21 C -0.179 4.179 22 C -0.232 4.232 23 C -0.003 4.003 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.156 -16.077 -8.107 18.280 hybrid contribution 0.828 1.450 0.514 1.747 sum -2.328 -14.627 -7.593 16.644 Atomic orbital electron populations 1.70020 1.06888 1.27595 1.50417 1.25607 0.95692 1.01962 0.94332 0.85643 0.78678 0.79547 0.78325 1.19996 1.20517 1.19856 1.21301 0.92727 0.91521 1.51948 0.93375 1.19659 0.92803 0.90879 0.94552 0.96189 1.22568 1.00795 0.92211 0.98355 1.22563 0.84532 0.95153 0.99676 1.48814 1.23192 1.16280 1.46295 1.20995 0.85682 0.81351 0.80326 1.90615 1.21890 1.78717 1.56027 1.20377 0.99953 0.91569 0.92814 1.21864 0.98247 1.09049 0.89167 1.23213 0.99375 0.97726 1.01025 1.23023 1.02776 0.92765 0.99444 1.21866 1.00069 0.93700 1.00354 1.23152 0.96249 0.99062 0.99457 1.22948 1.04780 1.04041 0.91416 1.21972 0.97684 0.88709 0.91912 0.92663 0.93616 0.91107 0.88746 0.90566 0.87898 0.89745 0.87527 0.88375 0.87662 0.86910 0.88076 0.87353 0.86613 0.88587 0.90379 0.94027 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.35 12.52 21.45 0.27 -50.08 16 2 C 0.02 1.31 5.36 84.65 0.45 1.76 16 3 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -29.40 8.47 25.60 0.22 -29.19 16 8 H 0.05 2.67 7.53 -2.91 -0.02 2.65 16 9 C 0.04 1.98 2.79 -10.26 -0.03 1.95 16 10 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 11 C -0.10 -4.33 5.97 32.07 0.19 -4.14 16 12 C 0.10 3.44 6.17 86.86 0.54 3.97 16 13 N -0.61 -23.86 3.33 -811.79 -2.70 -26.56 16 14 C 0.53 19.55 6.60 87.66 0.58 20.12 16 15 O -0.59 -26.63 16.80 -3.06 -0.05 -26.68 16 16 C -0.03 -0.68 1.89 -11.54 -0.02 -0.70 16 17 C -0.16 -3.84 5.13 -10.79 -0.06 -3.90 16 18 C -0.18 -3.28 9.54 30.62 0.29 -2.99 16 19 C -0.14 -2.29 9.88 30.62 0.30 -1.99 16 20 C -0.14 -3.34 4.26 -10.79 -0.05 -3.39 16 21 C -0.14 -2.36 10.18 30.62 0.31 -2.04 16 22 C -0.19 -4.53 10.01 30.62 0.31 -4.22 16 23 C 0.12 5.50 6.45 86.73 0.56 6.06 16 24 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 26 H 0.07 3.17 7.80 -2.39 -0.02 3.16 16 27 H 0.09 2.58 6.39 -2.38 -0.02 2.57 16 28 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.10 2.33 6.68 -2.39 -0.02 2.32 16 30 H 0.08 2.36 8.11 -2.39 -0.02 2.34 16 31 H 0.11 1.78 7.46 -2.39 -0.02 1.76 16 32 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.11 1.50 8.08 -2.39 -0.02 1.48 16 37 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.90 7.63 -2.39 -0.02 1.89 16 Total: -1.00 -64.37 333.66 4.13 -60.24 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.99 Total: 16.82 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.60 Total: -18.68 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -2.43 Total: -76.64 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -64.37 4.13 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.467 kcal (2) G-P(sol) polarization free energy of solvation -64.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds