Wall clock time and date at job start Mon Mar 30 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47141 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47334 * 239.99808 * 3 2 1 6 6 H 1.48495 * 109.47073 * 119.99754 * 3 2 1 7 7 C 1.37876 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99987 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64002 * 61.68318 * 9 7 2 11 11 C 1.55159 * 110.71903 * 298.54324 * 9 7 2 12 12 C 1.54903 * 101.58273 * 206.13506 * 11 9 7 13 13 N 1.47422 * 104.83332 * 37.00846 * 12 11 9 14 14 C 1.34777 * 125.64904 * 155.90417 * 13 12 11 15 15 O 1.21282 * 119.99905 * 174.94367 * 14 13 12 16 16 C 1.50702 * 120.00158 * 354.94390 * 14 13 12 17 17 C 1.53000 * 109.46981 * 94.75294 * 16 14 13 18 18 C 1.52999 * 117.50450 * 248.62361 * 17 16 14 19 19 C 1.52994 * 117.49887 * 179.97438 * 17 16 14 20 20 C 1.52994 * 109.47363 * 214.75437 * 16 14 13 21 21 C 1.53003 * 117.49852 * 133.97437 * 20 16 14 22 22 C 1.53003 * 60.00061 * 252.51050 * 21 20 16 23 23 C 1.47024 * 108.70249 * 335.87160 * 13 12 11 24 24 H 0.96990 * 119.99915 * 179.97438 * 1 2 3 25 25 H 1.08997 * 111.00686 * 324.21376 * 11 9 7 26 26 H 1.09000 * 111.00259 * 88.06091 * 11 9 7 27 27 H 1.08997 * 110.36680 * 155.84927 * 12 11 9 28 28 H 1.09007 * 110.36968 * 278.06172 * 12 11 9 29 29 H 1.08997 * 109.46849 * 334.75862 * 16 14 13 30 30 H 1.09008 * 115.55079 * 34.33176 * 17 16 14 31 31 H 1.09007 * 117.49466 * 0.02562 * 18 17 16 32 32 H 1.08999 * 117.50371 * 145.01921 * 18 17 16 33 33 H 1.09009 * 117.50465 * 214.98213 * 19 17 16 34 34 H 1.09000 * 117.50215 * 0.02562 * 19 17 16 35 35 H 1.09002 * 115.55196 * 279.68458 * 20 16 14 36 36 H 1.08995 * 117.49520 * 359.97438 * 21 20 16 37 37 H 1.08991 * 117.49962 * 145.02377 * 21 20 16 38 38 H 1.08994 * 117.50054 * 252.51018 * 22 21 20 39 39 H 1.09004 * 117.49579 * 107.48300 * 22 21 20 40 40 H 1.08994 * 109.88060 * 241.64066 * 23 13 12 41 41 H 1.09001 * 109.87755 * 120.47186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 -1.2124 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6402 -2.5902 -0.8977 11 6 0.3755 -2.6275 1.2751 12 6 0.2709 -4.1656 1.4269 13 7 1.5922 -4.6759 1.0182 14 6 2.1320 -5.8511 1.3977 15 8 3.1897 -6.2127 0.9270 16 6 1.4215 -6.7159 2.4069 17 6 0.5678 -7.7549 1.6770 18 6 -0.9526 -7.6147 1.7747 19 6 -0.2368 -8.7351 2.5328 20 6 2.4528 -7.4284 3.2841 21 6 2.2154 -7.4281 4.7956 22 6 3.3245 -6.5618 4.1952 23 6 2.2231 -3.6910 0.1275 24 1 -0.4849 -0.8400 -0.0004 25 1 0.8727 -2.1827 2.1371 26 1 -0.6074 -2.1825 1.1203 27 1 0.0657 -4.4313 2.4639 28 1 -0.5082 -4.5592 0.7740 29 1 0.7810 -6.0935 3.0317 30 1 0.9800 -8.1269 0.7390 31 1 -1.3447 -6.7820 2.3587 32 1 -1.5411 -7.8944 0.9009 33 1 -0.3546 -9.7518 2.1575 34 1 -0.1584 -8.6396 3.6158 35 1 2.9095 -8.3160 2.8462 36 1 1.3247 -6.9199 5.1649 37 1 2.5158 -8.3156 5.3523 38 1 4.3545 -6.8795 4.3570 39 1 3.1632 -5.4841 4.1696 40 1 2.3955 -4.1348 -0.8529 41 1 3.1674 -3.3551 0.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397593677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:08 Heat of formation + Delta-G solvation = 3.708546 kcal Electronic energy + Delta-G solvation = -20419.070555 eV Core-core repulsion = 17492.983741 eV Total energy + Delta-G solvation = -2926.086813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07707 -38.00953 -36.69333 -36.16527 -33.34004 -30.51040 -29.14568 -28.29468 -24.49713 -22.90096 -22.58574 -22.30531 -21.48244 -20.65373 -19.79261 -18.60963 -17.34128 -16.54953 -16.00491 -15.67373 -15.27806 -14.51087 -14.24379 -13.86792 -13.74313 -13.35386 -12.87238 -12.31622 -12.13178 -11.90885 -11.84571 -11.64523 -11.57981 -11.50217 -11.34293 -10.96266 -10.74107 -10.56906 -10.43762 -10.33434 -10.14626 -9.94481 -9.88349 -9.76551 -9.18724 -8.61375 -8.44651 -8.05531 -6.41499 -4.15702 2.98599 3.36118 3.42028 3.42511 3.61185 3.66680 3.90133 4.46901 4.48754 4.67141 4.74133 4.91542 4.93735 5.01635 5.17056 5.25001 5.29039 5.40483 5.47418 5.53306 5.58455 5.63249 5.75550 5.79186 5.84053 5.89050 6.01109 6.06509 6.08489 6.09368 6.18148 6.27840 6.50268 6.69054 6.76795 6.89292 7.06582 7.46578 8.06917 8.09139 8.34769 8.61214 8.78919 9.55557 10.95680 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.004908 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.126062 B = 5703.746329 C = 6089.239485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.052 0.948 9 C 0.028 3.972 10 H 0.031 0.969 11 C -0.126 4.126 12 C 0.097 3.903 13 N -0.610 5.610 14 C 0.532 3.468 15 O -0.549 6.549 16 C -0.042 4.042 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.169 4.169 20 C -0.124 4.124 21 C -0.179 4.179 22 C -0.175 4.175 23 C 0.119 3.881 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -14.269 7.735 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.071 0.929 9 C 0.009 3.991 10 H 0.049 0.951 11 C -0.164 4.164 12 C -0.026 4.026 13 N -0.342 5.342 14 C 0.320 3.680 15 O -0.428 6.428 16 C -0.063 4.063 17 C -0.157 4.157 18 C -0.214 4.214 19 C -0.206 4.206 20 C -0.143 4.143 21 C -0.216 4.216 22 C -0.212 4.212 23 C -0.003 4.003 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.436 -12.869 7.493 14.961 hybrid contribution 0.155 -1.638 -0.022 1.646 sum -1.281 -14.507 7.471 16.368 Atomic orbital electron populations 1.70836 1.06831 1.30972 1.46078 1.25784 0.96488 1.02497 0.93327 0.83551 0.74924 0.75302 0.76647 1.20756 1.21376 1.21428 1.21874 0.94176 0.90861 1.56358 0.92933 1.19877 0.93027 0.92907 0.93287 0.95116 1.23020 1.01507 0.90583 1.01319 1.22472 0.84507 0.97154 0.98495 1.48717 1.19104 1.18301 1.48121 1.20006 0.85219 0.80434 0.82375 1.90646 1.23358 1.71981 1.56779 1.20444 0.95848 0.94886 0.95137 1.21975 0.92472 1.00269 1.01021 1.23075 0.94071 1.01272 1.03019 1.22921 1.03813 0.95059 0.98808 1.21867 1.00237 1.01584 0.90590 1.23036 1.00827 1.02456 0.95249 1.22913 0.96279 0.98122 1.03848 1.22168 0.97764 0.88433 0.91894 0.91624 0.91466 0.90710 0.92195 0.92099 0.89418 0.87494 0.88576 0.88656 0.88812 0.88500 0.87206 0.88968 0.88743 0.88671 0.88944 0.93298 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.92 13.42 55.43 0.74 -25.18 16 2 C 0.02 0.65 5.33 -17.82 -0.10 0.55 16 3 Si 1.07 24.41 29.90 -169.99 -5.08 19.32 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.59 -16.06 8.50 -34.44 -0.29 -16.36 16 8 H 0.05 1.43 7.57 -52.49 -0.40 1.04 16 9 C 0.03 0.67 2.51 -89.94 -0.23 0.45 16 10 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 11 C -0.13 -2.65 5.67 -24.58 -0.14 -2.79 16 12 C 0.10 1.67 6.72 -2.53 -0.02 1.65 16 13 N -0.61 -11.79 3.33 -170.53 -0.57 -12.35 16 14 C 0.53 9.83 6.60 -10.98 -0.07 9.76 16 15 O -0.55 -11.97 16.79 5.56 0.09 -11.88 16 16 C -0.04 -0.58 2.08 -91.77 -0.19 -0.77 16 17 C -0.14 -1.69 5.13 -90.62 -0.47 -2.16 16 18 C -0.18 -1.83 10.18 -26.71 -0.27 -2.10 16 19 C -0.17 -1.61 9.88 -26.71 -0.26 -1.87 16 20 C -0.12 -1.59 4.25 -90.62 -0.38 -1.98 16 21 C -0.18 -1.85 10.18 -26.73 -0.27 -2.12 16 22 C -0.17 -2.23 10.01 -26.73 -0.27 -2.50 16 23 C 0.12 2.64 6.46 -3.07 -0.02 2.62 16 24 H 0.27 7.51 5.31 -40.82 -0.22 7.30 16 25 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 26 H 0.07 1.61 6.46 -51.93 -0.34 1.27 16 27 H 0.06 0.88 6.62 -51.93 -0.34 0.54 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.15 5.95 -51.93 -0.31 0.84 16 30 H 0.11 1.44 8.11 -51.92 -0.42 1.01 16 31 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.47 7.66 -51.93 -0.40 1.07 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -30.10 331.47 -9.49 -39.60 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.70 Total: 3.12 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.98 Total: -17.62 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.18 Total: -37.53 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.10 -9.49 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.304 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds