Wall clock time and date at job start Mon Mar 30 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47141 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47334 * 239.99808 * 3 2 1 6 6 H 1.48495 * 109.47073 * 119.99754 * 3 2 1 7 7 C 1.37876 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99987 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64002 * 61.68318 * 9 7 2 11 11 C 1.55159 * 110.71903 * 298.54324 * 9 7 2 12 12 C 1.54903 * 101.58273 * 206.13506 * 11 9 7 13 13 N 1.47422 * 104.83332 * 37.00846 * 12 11 9 14 14 C 1.34777 * 125.64904 * 155.90417 * 13 12 11 15 15 O 1.21282 * 119.99905 * 174.94367 * 14 13 12 16 16 C 1.50702 * 120.00158 * 354.94390 * 14 13 12 17 17 C 1.53000 * 109.46981 * 94.75294 * 16 14 13 18 18 C 1.52999 * 117.50450 * 248.62361 * 17 16 14 19 19 C 1.52994 * 117.49887 * 179.97438 * 17 16 14 20 20 C 1.52994 * 109.47363 * 214.75437 * 16 14 13 21 21 C 1.53003 * 117.49852 * 133.97437 * 20 16 14 22 22 C 1.53003 * 60.00061 * 252.51050 * 21 20 16 23 23 C 1.47024 * 108.70249 * 335.87160 * 13 12 11 24 24 H 0.96990 * 119.99915 * 179.97438 * 1 2 3 25 25 H 1.08997 * 111.00686 * 324.21376 * 11 9 7 26 26 H 1.09000 * 111.00259 * 88.06091 * 11 9 7 27 27 H 1.08997 * 110.36680 * 155.84927 * 12 11 9 28 28 H 1.09007 * 110.36968 * 278.06172 * 12 11 9 29 29 H 1.08997 * 109.46849 * 334.75862 * 16 14 13 30 30 H 1.09008 * 115.55079 * 34.33176 * 17 16 14 31 31 H 1.09007 * 117.49466 * 0.02562 * 18 17 16 32 32 H 1.08999 * 117.50371 * 145.01921 * 18 17 16 33 33 H 1.09009 * 117.50465 * 214.98213 * 19 17 16 34 34 H 1.09000 * 117.50215 * 0.02562 * 19 17 16 35 35 H 1.09002 * 115.55196 * 279.68458 * 20 16 14 36 36 H 1.08995 * 117.49520 * 359.97438 * 21 20 16 37 37 H 1.08991 * 117.49962 * 145.02377 * 21 20 16 38 38 H 1.08994 * 117.50054 * 252.51018 * 22 21 20 39 39 H 1.09004 * 117.49579 * 107.48300 * 22 21 20 40 40 H 1.08994 * 109.88060 * 241.64066 * 23 13 12 41 41 H 1.09001 * 109.87755 * 120.47186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 -1.2124 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6402 -2.5902 -0.8977 11 6 0.3755 -2.6275 1.2751 12 6 0.2709 -4.1656 1.4269 13 7 1.5922 -4.6759 1.0182 14 6 2.1320 -5.8511 1.3977 15 8 3.1897 -6.2127 0.9270 16 6 1.4215 -6.7159 2.4069 17 6 0.5678 -7.7549 1.6770 18 6 -0.9526 -7.6147 1.7747 19 6 -0.2368 -8.7351 2.5328 20 6 2.4528 -7.4284 3.2841 21 6 2.2154 -7.4281 4.7956 22 6 3.3245 -6.5618 4.1952 23 6 2.2231 -3.6910 0.1275 24 1 -0.4849 -0.8400 -0.0004 25 1 0.8727 -2.1827 2.1371 26 1 -0.6074 -2.1825 1.1203 27 1 0.0657 -4.4313 2.4639 28 1 -0.5082 -4.5592 0.7740 29 1 0.7810 -6.0935 3.0317 30 1 0.9800 -8.1269 0.7390 31 1 -1.3447 -6.7820 2.3587 32 1 -1.5411 -7.8944 0.9009 33 1 -0.3546 -9.7518 2.1575 34 1 -0.1584 -8.6396 3.6158 35 1 2.9095 -8.3160 2.8462 36 1 1.3247 -6.9199 5.1649 37 1 2.5158 -8.3156 5.3523 38 1 4.3545 -6.8795 4.3570 39 1 3.1632 -5.4841 4.1696 40 1 2.3955 -4.1348 -0.8529 41 1 3.1674 -3.3551 0.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397593677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:07 Heat of formation + Delta-G solvation = -11.870580 kcal Electronic energy + Delta-G solvation = -20419.746116 eV Core-core repulsion = 17492.983741 eV Total energy + Delta-G solvation = -2926.762375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45503 -39.32875 -38.17723 -37.07497 -35.28632 -32.18983 -30.58665 -29.83949 -26.45745 -24.45605 -23.50827 -23.14638 -22.38646 -22.05213 -21.40821 -19.95987 -19.18222 -18.13542 -17.34652 -16.94080 -16.59238 -15.68857 -15.61124 -15.52638 -14.93391 -14.55359 -14.51919 -14.15452 -13.76686 -13.66274 -13.25762 -12.88977 -12.67194 -12.53820 -12.48069 -12.41926 -12.31505 -11.94733 -11.75938 -11.68337 -11.60791 -11.33226 -11.24268 -10.78157 -10.68542 -10.53029 -10.49651 -9.68620 -8.59408 -6.34441 1.54543 1.55322 1.61165 1.81189 1.94234 2.56765 2.79736 2.91156 3.17783 3.44225 3.62849 3.80260 3.84457 3.98938 4.02504 4.07168 4.10132 4.21554 4.25392 4.30820 4.33496 4.47589 4.55685 4.62160 4.73466 4.76287 4.83695 4.88929 4.98157 5.05064 5.05572 5.15688 5.17584 5.22337 5.23754 5.29973 5.32028 5.55563 6.02736 6.17099 6.55356 6.65332 7.10327 7.43082 8.79635 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.004908 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.126062 B = 5703.746329 C = 6089.239485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.018 4.018 3 Si 1.110 2.890 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.613 4.613 8 H 0.040 0.960 9 C 0.021 3.979 10 H 0.013 0.987 11 C -0.116 4.116 12 C 0.108 3.892 13 N -0.614 5.614 14 C 0.527 3.473 15 O -0.590 6.590 16 C -0.027 4.027 17 C -0.163 4.163 18 C -0.174 4.174 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.198 4.198 23 C 0.129 3.871 24 H 0.267 0.733 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -15.545 9.653 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.218 4.218 3 Si 0.932 3.068 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.651 4.651 8 H 0.058 0.942 9 C 0.002 3.998 10 H 0.031 0.969 11 C -0.155 4.155 12 C -0.014 4.014 13 N -0.347 5.347 14 C 0.317 3.683 15 O -0.470 6.470 16 C -0.048 4.048 17 C -0.182 4.182 18 C -0.211 4.211 19 C -0.182 4.182 20 C -0.159 4.159 21 C -0.178 4.178 22 C -0.235 4.235 23 C 0.006 3.994 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.736 -14.173 9.423 17.238 hybrid contribution 0.599 -1.280 -0.669 1.564 sum -2.137 -15.454 8.754 17.889 Atomic orbital electron populations 1.70920 1.07454 1.30882 1.47513 1.27018 0.96660 1.05598 0.92490 0.83000 0.74230 0.71936 0.77592 1.20581 1.20170 1.20018 1.22180 0.93926 0.92615 1.56421 0.94174 1.19808 0.93502 0.92446 0.94035 0.96864 1.22786 1.00196 0.93663 0.98822 1.22496 0.83800 0.93924 1.01159 1.48801 1.19766 1.18280 1.47807 1.21014 0.84816 0.80049 0.82372 1.90618 1.25322 1.72783 1.58314 1.20400 0.95962 0.94590 0.93872 1.21846 0.93487 1.01712 1.01173 1.23197 0.92303 1.02027 1.03539 1.23023 1.00785 0.95165 0.99218 1.21884 1.00554 1.01296 0.92156 1.23142 0.99735 1.02112 0.92820 1.22933 0.97408 0.97440 1.05687 1.21804 0.96688 0.88806 0.92132 0.92124 0.93094 0.91082 0.88547 0.90137 0.87970 0.89522 0.87669 0.88146 0.87561 0.87085 0.87868 0.87430 0.86460 0.88558 0.90744 0.94144 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.42 21.45 0.29 -53.11 16 2 C -0.02 -0.98 5.33 84.65 0.45 -0.53 16 3 Si 1.11 49.22 29.90 68.60 2.05 51.27 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.61 -34.04 8.50 25.60 0.22 -33.82 16 8 H 0.04 2.27 7.57 -2.91 -0.02 2.24 16 9 C 0.02 1.04 2.51 -10.35 -0.03 1.02 16 10 H 0.01 0.70 8.08 -2.39 -0.02 0.68 16 11 C -0.12 -4.89 5.67 31.98 0.18 -4.71 16 12 C 0.11 3.54 6.72 86.85 0.58 4.13 16 13 N -0.61 -23.68 3.33 -811.81 -2.70 -26.38 16 14 C 0.53 19.43 6.60 87.66 0.58 20.01 16 15 O -0.59 -26.39 16.79 -3.04 -0.05 -26.44 16 16 C -0.03 -0.71 2.08 -11.54 -0.02 -0.73 16 17 C -0.16 -3.63 5.13 -10.80 -0.06 -3.69 16 18 C -0.17 -2.99 10.18 30.61 0.31 -2.68 16 19 C -0.15 -2.21 9.88 30.61 0.30 -1.91 16 20 C -0.14 -3.35 4.25 -10.79 -0.05 -3.39 16 21 C -0.14 -2.41 10.18 30.60 0.31 -2.10 16 22 C -0.20 -4.81 10.01 30.60 0.31 -4.50 16 23 C 0.13 5.92 6.46 86.73 0.56 6.48 16 24 H 0.27 15.01 5.31 -92.72 -0.49 14.51 16 25 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 26 H 0.07 3.05 6.46 -2.39 -0.02 3.03 16 27 H 0.10 2.51 6.62 -2.39 -0.02 2.49 16 28 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.10 2.32 5.95 -2.39 -0.01 2.30 16 30 H 0.09 2.28 8.11 -2.38 -0.02 2.26 16 31 H 0.10 1.64 8.05 -2.38 -0.02 1.62 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 2.00 7.66 -2.39 -0.02 1.99 16 Total: -1.00 -67.08 331.47 4.51 -62.57 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.27 Total: 18.53 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.65 Total: -26.44 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.41 Total: -79.50 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -67.08 4.51 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.700 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds