Wall clock time and date at job start Mon Mar 30 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48502 * 109.47100 * 239.99974 * 3 2 1 5 5 H 1.48499 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47395 * 120.00168 * 3 2 1 7 7 C 1.37879 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99753 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.52429 * 299.91368 * 9 7 2 11 11 C 1.53044 * 109.50030 * 60.00011 * 9 7 2 12 12 C 1.53037 * 109.53935 * 181.31863 * 11 9 7 13 13 C 1.53192 * 109.31065 * 298.63278 * 12 11 9 14 14 N 1.46931 * 108.77869 * 54.63361 * 13 12 11 15 15 C 1.34778 * 120.63137 * 126.38831 * 14 13 12 16 16 O 1.21274 * 119.99833 * 174.51902 * 15 14 13 17 17 C 1.50701 * 119.99811 * 354.52394 * 15 14 13 18 18 H 1.08999 * 110.67599 * 331.28994 * 17 15 14 19 19 C 1.54889 * 110.75335 * 207.85304 * 17 15 14 20 20 C 1.54270 * 104.19620 * 203.74026 * 19 17 15 21 21 H 1.08996 * 117.75646 * 163.96836 * 20 19 17 22 22 C 1.52996 * 118.20171 * 319.43415 * 20 19 17 23 23 C 1.53003 * 60.37959 * 93.61325 * 22 20 19 24 24 H 1.08994 * 119.29842 * 112.23938 * 23 22 20 25 25 C 1.54270 * 118.19912 * 266.38452 * 23 22 20 26 26 C 1.46927 * 118.73687 * 306.39674 * 14 13 12 27 27 H 0.96998 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.45633 * 301.33534 * 11 9 7 29 29 H 1.08993 * 109.46328 * 61.29347 * 11 9 7 30 30 H 1.09001 * 109.50141 * 58.57950 * 12 11 9 31 31 H 1.08992 * 109.50182 * 178.64729 * 12 11 9 32 32 H 1.08999 * 109.58799 * 174.41904 * 13 12 11 33 33 H 1.08998 * 109.58563 * 294.84916 * 13 12 11 34 34 H 1.08995 * 110.48787 * 322.42301 * 19 17 15 35 35 H 1.09001 * 110.48421 * 85.06818 * 19 17 15 36 36 H 1.09004 * 117.45887 * 346.01589 * 22 20 19 37 37 H 1.08998 * 117.44594 * 201.22207 * 22 20 19 38 38 H 1.08997 * 110.48540 * 281.88694 * 25 23 22 39 39 H 1.09003 * 110.59250 * 159.29909 * 25 23 22 40 40 H 1.08998 * 109.58160 * 293.81396 * 26 14 13 41 41 H 1.08996 * 109.58206 * 173.39481 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 0.3714 -2.5812 -1.2492 12 6 -0.4191 -3.8915 -1.2336 13 6 0.5569 -5.0721 -1.2510 14 7 1.4998 -4.9229 -0.1341 15 6 1.6768 -5.9217 0.7533 16 8 2.5283 -5.8264 1.6116 17 6 0.8166 -7.1569 0.6790 18 1 -0.1593 -6.9212 0.2547 19 6 0.6693 -7.8080 2.0766 20 6 0.3366 -9.2835 1.7734 21 1 0.4465 -10.0054 2.5826 22 6 -0.6301 -9.5858 0.6267 23 6 0.8769 -9.5749 0.3624 24 1 1.3821 -10.5090 0.1171 25 6 1.5190 -8.2663 -0.1426 26 6 2.2459 -3.6639 -0.0029 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3212 -1.7395 -1.2616 29 1 1.0001 -2.5469 -2.1388 30 1 -1.0295 -3.9375 -0.3317 31 1 -1.0632 -3.9383 -2.1116 32 1 0.0041 -6.0050 -1.1402 33 1 1.1049 -5.0793 -2.1932 34 1 1.6040 -7.7341 2.6324 35 1 -0.1437 -7.3400 2.6317 36 1 -1.2158 -8.7560 0.2311 37 1 -1.1321 -10.5533 0.6346 38 1 1.3261 -8.1327 -1.2071 39 1 2.5913 -8.2649 0.0531 40 1 2.9316 -3.5564 -0.8434 41 1 2.8075 -3.6677 0.9312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397660113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:11 Heat of formation + Delta-G solvation = -23.181248 kcal Electronic energy + Delta-G solvation = -20515.052013 eV Core-core repulsion = 17587.799170 eV Total energy + Delta-G solvation = -2927.252842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45619 -38.66723 -36.66891 -33.52857 -31.75246 -31.21345 -30.00730 -28.32063 -25.43735 -24.96032 -23.45121 -21.69017 -20.70104 -19.82354 -19.19143 -18.20889 -17.23615 -16.26869 -16.07785 -14.87977 -14.75347 -14.32441 -14.07428 -13.66956 -13.46145 -13.17504 -13.13833 -12.77404 -12.58611 -12.10728 -11.99209 -11.54030 -11.46042 -11.09860 -11.04994 -10.92414 -10.82848 -10.71799 -10.27925 -10.17584 -9.95582 -9.80227 -9.64901 -9.47559 -9.20510 -8.83084 -8.38772 -7.88491 -6.02388 -4.09631 3.01707 3.31277 3.35604 3.38355 3.55611 3.58632 4.31217 4.42221 4.55454 4.76208 4.93779 5.02101 5.12455 5.27235 5.28693 5.34912 5.47453 5.51078 5.63505 5.72928 5.78471 5.80010 5.85270 6.01223 6.08345 6.10571 6.15195 6.29246 6.32772 6.40627 6.48786 6.66197 6.80966 6.97977 7.16836 7.32990 7.68204 7.91307 8.03321 8.06902 8.37064 8.67247 8.93872 9.55281 11.03088 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040185 B = 0.004539 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.614119 B = 6167.829180 C = 6428.840216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.602 5.602 15 C 0.518 3.482 16 O -0.552 6.552 17 C -0.122 4.122 18 H 0.097 0.903 19 C -0.079 4.079 20 C -0.163 4.163 21 H 0.111 0.889 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.111 0.889 25 C -0.079 4.079 26 C 0.117 3.883 27 H 0.261 0.739 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -16.603 -2.336 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.333 5.333 15 C 0.306 3.694 16 O -0.430 6.430 17 C -0.143 4.143 18 H 0.115 0.885 19 C -0.117 4.117 20 C -0.181 4.181 21 H 0.129 0.871 22 C -0.194 4.194 23 C -0.185 4.185 24 H 0.129 0.871 25 C -0.117 4.117 26 C -0.004 4.004 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.193 -16.396 -1.889 16.650 hybrid contribution 0.314 0.936 -0.142 0.997 sum -1.879 -15.461 -2.032 15.706 Atomic orbital electron populations 1.69859 1.05902 1.26590 1.50449 1.24930 0.94854 0.99066 0.94902 0.86637 0.79591 0.82971 0.78687 1.20255 1.21302 1.20211 1.21045 0.92969 0.90305 1.51053 0.92532 1.18966 0.92940 0.91163 0.94781 0.95333 1.21627 0.99458 0.95376 0.98573 1.22013 0.97671 0.96759 1.00956 1.21796 0.91468 0.99087 0.89222 1.48312 1.42042 1.15959 1.27025 1.20266 0.83963 0.84060 0.81149 1.90637 1.35323 1.80375 1.36703 1.22330 0.99656 0.93656 0.98683 0.88493 1.21827 1.02816 0.91701 0.95346 1.23152 1.04859 0.97939 0.92133 0.87126 1.22944 0.91917 1.02819 1.01724 1.23079 0.96027 0.98964 1.00460 0.87115 1.21816 0.99917 0.90973 0.98986 1.21997 0.95099 0.81901 1.01423 0.92918 0.88631 0.94588 0.92397 0.92479 0.90961 0.91913 0.89151 0.91188 0.88883 0.88420 0.91005 0.90285 0.92785 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.31 55.43 0.63 -24.31 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.00 8.56 -34.44 -0.29 -14.29 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.14 -2.40 6.08 -26.61 -0.16 -2.56 16 13 C 0.11 1.66 6.31 -3.71 -0.02 1.64 16 14 N -0.60 -11.24 2.97 -172.77 -0.51 -11.75 16 15 C 0.52 9.44 6.83 -10.98 -0.08 9.36 16 16 O -0.55 -11.99 15.32 5.56 0.09 -11.90 16 17 C -0.12 -1.66 1.96 -89.78 -0.18 -1.84 16 18 H 0.10 1.21 5.47 -51.93 -0.28 0.92 16 19 C -0.08 -1.03 6.09 -25.07 -0.15 -1.18 16 20 C -0.16 -1.69 7.06 -89.50 -0.63 -2.32 16 21 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 22 C -0.16 -1.43 9.83 -26.73 -0.26 -1.69 16 23 C -0.17 -1.66 7.06 -89.50 -0.63 -2.29 16 24 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.08 -0.92 6.20 -25.07 -0.16 -1.07 16 26 C 0.12 2.56 5.64 -3.71 -0.02 2.54 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 5.42 -51.93 -0.28 0.62 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.33 7.25 -51.93 -0.38 0.95 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.86 7.21 -51.93 -0.37 0.48 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.84 7.04 -51.93 -0.37 1.47 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -29.60 316.69 -9.67 -39.28 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.60 Total: 1.72 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.02 Total: -13.90 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.11 Total: -36.06 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.60 -9.67 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397660113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds