Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48502 * 109.47100 * 239.99974 * 3 2 1 5 5 H 1.48499 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47395 * 120.00168 * 3 2 1 7 7 C 1.37879 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99753 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.52429 * 299.91368 * 9 7 2 11 11 C 1.53044 * 109.50030 * 60.00011 * 9 7 2 12 12 C 1.53037 * 109.53935 * 181.31863 * 11 9 7 13 13 C 1.53192 * 109.31065 * 298.63278 * 12 11 9 14 14 N 1.46931 * 108.77869 * 54.63361 * 13 12 11 15 15 C 1.34778 * 120.63137 * 126.38831 * 14 13 12 16 16 O 1.21274 * 119.99833 * 174.51902 * 15 14 13 17 17 C 1.50701 * 119.99811 * 354.52394 * 15 14 13 18 18 H 1.08999 * 110.67599 * 331.28994 * 17 15 14 19 19 C 1.54889 * 110.75335 * 207.85304 * 17 15 14 20 20 C 1.54270 * 104.19620 * 203.74026 * 19 17 15 21 21 H 1.08996 * 117.75646 * 163.96836 * 20 19 17 22 22 C 1.52996 * 118.20171 * 319.43415 * 20 19 17 23 23 C 1.53003 * 60.37959 * 93.61325 * 22 20 19 24 24 H 1.08994 * 119.29842 * 112.23938 * 23 22 20 25 25 C 1.54270 * 118.19912 * 266.38452 * 23 22 20 26 26 C 1.46927 * 118.73687 * 306.39674 * 14 13 12 27 27 H 0.96998 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.45633 * 301.33534 * 11 9 7 29 29 H 1.08993 * 109.46328 * 61.29347 * 11 9 7 30 30 H 1.09001 * 109.50141 * 58.57950 * 12 11 9 31 31 H 1.08992 * 109.50182 * 178.64729 * 12 11 9 32 32 H 1.08999 * 109.58799 * 174.41904 * 13 12 11 33 33 H 1.08998 * 109.58563 * 294.84916 * 13 12 11 34 34 H 1.08995 * 110.48787 * 322.42301 * 19 17 15 35 35 H 1.09001 * 110.48421 * 85.06818 * 19 17 15 36 36 H 1.09004 * 117.45887 * 346.01589 * 22 20 19 37 37 H 1.08998 * 117.44594 * 201.22207 * 22 20 19 38 38 H 1.08997 * 110.48540 * 281.88694 * 25 23 22 39 39 H 1.09003 * 110.59250 * 159.29909 * 25 23 22 40 40 H 1.08998 * 109.58160 * 293.81396 * 26 14 13 41 41 H 1.08996 * 109.58206 * 173.39481 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 0.3714 -2.5812 -1.2492 12 6 -0.4191 -3.8915 -1.2336 13 6 0.5569 -5.0721 -1.2510 14 7 1.4998 -4.9229 -0.1341 15 6 1.6768 -5.9217 0.7533 16 8 2.5283 -5.8264 1.6116 17 6 0.8166 -7.1569 0.6790 18 1 -0.1593 -6.9212 0.2547 19 6 0.6693 -7.8080 2.0766 20 6 0.3366 -9.2835 1.7734 21 1 0.4465 -10.0054 2.5826 22 6 -0.6301 -9.5858 0.6267 23 6 0.8769 -9.5749 0.3624 24 1 1.3821 -10.5090 0.1171 25 6 1.5190 -8.2663 -0.1426 26 6 2.2459 -3.6639 -0.0029 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3212 -1.7395 -1.2616 29 1 1.0001 -2.5469 -2.1388 30 1 -1.0295 -3.9375 -0.3317 31 1 -1.0632 -3.9383 -2.1116 32 1 0.0041 -6.0050 -1.1402 33 1 1.1049 -5.0793 -2.1932 34 1 1.6040 -7.7341 2.6324 35 1 -0.1437 -7.3400 2.6317 36 1 -1.2158 -8.7560 0.2311 37 1 -1.1321 -10.5533 0.6346 38 1 1.3261 -8.1327 -1.2071 39 1 2.5913 -8.2649 0.0531 40 1 2.9316 -3.5564 -0.8434 41 1 2.8075 -3.6677 0.9312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397660113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = -39.058455 kcal Electronic energy + Delta-G solvation = -20515.740500 eV Core-core repulsion = 17587.799170 eV Total energy + Delta-G solvation = -2927.941330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67414 -39.87456 -38.27095 -35.39773 -33.24559 -32.62855 -31.63264 -29.24910 -27.22151 -26.50668 -24.67391 -23.33681 -21.95553 -20.65212 -20.62259 -19.55470 -18.71495 -18.14331 -17.23624 -16.68318 -16.21455 -15.72996 -15.42407 -15.09270 -14.69115 -14.63709 -14.34759 -14.20721 -13.97139 -13.71312 -13.59335 -12.87171 -12.76552 -12.63021 -12.44302 -12.35014 -12.10356 -12.09151 -11.85735 -11.70125 -11.58106 -11.29348 -10.95842 -10.87304 -10.64328 -10.44404 -10.41935 -9.50430 -8.11831 -6.27326 1.40773 1.42199 1.49633 1.60003 2.10662 2.43092 2.82600 3.14561 3.36773 3.62702 3.66785 3.95646 4.14559 4.15512 4.22799 4.30155 4.33946 4.39296 4.48589 4.53881 4.61077 4.74196 4.80398 4.85429 4.88697 4.91528 4.96774 5.05759 5.10894 5.12201 5.23630 5.28736 5.29595 5.39594 5.47788 5.55773 5.59925 5.91530 6.12157 6.33165 6.56165 6.81660 7.20947 7.40861 8.91666 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040185 B = 0.004539 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.614119 B = 6167.829180 C = 6428.840216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.015 1.015 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.108 3.892 14 N -0.607 5.607 15 C 0.511 3.489 16 O -0.596 6.596 17 C -0.114 4.114 18 H 0.118 0.882 19 C -0.083 4.083 20 C -0.174 4.174 21 H 0.122 0.878 22 C -0.141 4.141 23 C -0.164 4.164 24 H 0.128 0.872 25 C -0.077 4.077 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -18.599 -4.085 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.013 4.013 14 N -0.337 5.337 15 C 0.301 3.699 16 O -0.478 6.478 17 C -0.135 4.135 18 H 0.136 0.864 19 C -0.121 4.121 20 C -0.192 4.192 21 H 0.140 0.860 22 C -0.177 4.177 23 C -0.182 4.182 24 H 0.146 0.854 25 C -0.115 4.115 26 C 0.007 3.993 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.183 -18.411 -3.659 19.040 hybrid contribution 0.626 1.585 0.457 1.764 sum -2.557 -16.827 -3.202 17.318 Atomic orbital electron populations 1.69995 1.07075 1.27320 1.50737 1.25676 0.95698 1.02230 0.94465 0.85662 0.78461 0.79027 0.78812 1.19270 1.20645 1.20202 1.21414 0.93051 0.91973 1.51539 0.93066 1.18865 0.93112 0.91540 0.94175 0.99651 1.21424 0.98770 0.97166 0.97051 1.21923 0.97817 0.94899 1.01972 1.22046 0.90777 0.99766 0.88759 1.48400 1.42337 1.14739 1.28256 1.21178 0.83759 0.85052 0.79922 1.90613 1.37418 1.81414 1.38358 1.22367 0.99530 0.91762 0.99824 0.86442 1.21784 1.01466 0.94037 0.94794 1.23108 1.06884 0.95990 0.93170 0.86048 1.23078 0.91242 1.04023 0.99383 1.23121 0.97022 0.98601 0.99430 0.85400 1.21819 0.98857 0.91006 0.99794 1.21549 0.94581 0.83002 1.00202 0.92876 0.91869 0.94417 0.93647 0.89040 0.86877 0.89930 0.91833 0.91542 0.88597 0.86199 0.88947 0.92009 0.92212 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.44 11.31 21.45 0.24 -52.20 16 2 C 0.02 1.04 5.30 84.66 0.45 1.49 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.44 8.56 25.60 0.22 -30.22 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.17 2.25 -11.46 -0.03 2.14 16 10 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.11 -4.78 4.96 30.62 0.15 -4.62 16 12 C -0.13 -4.29 6.08 30.67 0.19 -4.10 16 13 C 0.11 3.03 6.31 86.36 0.55 3.58 16 14 N -0.61 -22.41 2.97 -818.91 -2.43 -24.84 16 15 C 0.51 18.65 6.83 87.66 0.60 19.24 16 16 O -0.60 -27.02 15.32 -3.01 -0.05 -27.07 16 17 C -0.11 -2.90 1.96 -10.25 -0.02 -2.92 16 18 H 0.12 2.50 5.47 -2.39 -0.01 2.49 16 19 C -0.08 -2.10 6.09 31.67 0.19 -1.91 16 20 C -0.17 -3.17 7.06 -10.07 -0.07 -3.25 16 21 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.14 -1.95 9.83 30.59 0.30 -1.65 16 23 C -0.16 -2.67 7.06 -10.07 -0.07 -2.74 16 24 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 25 C -0.08 -1.58 6.20 31.67 0.20 -1.38 16 26 C 0.13 5.86 5.64 86.36 0.49 6.34 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.06 3.27 6.04 -2.39 -0.01 3.26 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.30 5.42 -2.39 -0.01 2.29 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.94 7.25 -2.39 -0.02 1.92 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.31 7.21 -2.38 -0.02 1.29 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 40 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 2.50 7.04 -2.39 -0.02 2.48 16 Total: -1.00 -68.03 316.69 3.93 -64.10 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.00 Total: 14.07 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 3.14 Total: -19.99 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.19 Total: -77.04 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.03 3.93 -64.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397660113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.046 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds