Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47562 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46905 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47399 * 59.99372 * 3 2 1 7 7 C 1.37878 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00181 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.49729 * 60.06035 * 9 7 2 11 11 C 1.53041 * 109.49712 * 299.99862 * 9 7 2 12 12 C 1.53038 * 109.53768 * 178.65334 * 11 9 7 13 13 C 1.53187 * 109.31606 * 61.36503 * 12 11 9 14 14 N 1.46926 * 108.77227 * 305.36475 * 13 12 11 15 15 C 1.34787 * 120.62918 * 233.33389 * 14 13 12 16 16 O 1.21282 * 119.99956 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99793 * 0.02562 * 15 14 13 18 18 H 1.08996 * 110.67271 * 303.23220 * 17 15 14 19 19 C 1.54897 * 110.75351 * 180.02562 * 17 15 14 20 20 C 1.54269 * 104.19140 * 279.62529 * 19 17 15 21 21 H 1.09000 * 117.40986 * 116.37461 * 20 19 17 22 22 C 1.52991 * 118.20065 * 272.20805 * 20 19 17 23 23 C 1.52995 * 60.37757 * 93.61941 * 22 20 19 24 24 H 1.09006 * 119.29710 * 111.30862 * 23 22 20 25 25 C 1.54263 * 118.20274 * 266.38428 * 23 22 20 26 26 C 1.46924 * 118.73991 * 53.60881 * 14 13 12 27 27 H 0.96995 * 119.99782 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46022 * 58.62720 * 11 9 7 29 29 H 1.09007 * 109.44471 * 298.66473 * 11 9 7 30 30 H 1.08999 * 109.49677 * 301.40907 * 12 11 9 31 31 H 1.09001 * 109.52131 * 181.33314 * 12 11 9 32 32 H 1.09002 * 109.58471 * 185.57893 * 13 12 11 33 33 H 1.08996 * 109.70613 * 65.22278 * 13 12 11 34 34 H 1.08998 * 110.48286 * 38.30351 * 19 17 15 35 35 H 1.09003 * 110.48302 * 160.81492 * 19 17 15 36 36 H 1.09001 * 117.46707 * 201.21778 * 22 20 19 37 37 H 1.09006 * 117.46478 * 346.02379 * 22 20 19 38 38 H 1.09003 * 110.48542 * 329.11113 * 25 23 22 39 39 H 1.09003 * 110.48809 * 206.46694 * 25 23 22 40 40 H 1.09003 * 109.58516 * 66.18182 * 26 14 13 41 41 H 1.09002 * 109.58479 * 186.60340 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5580 -0.8901 11 6 0.3705 -2.5806 1.2496 12 6 -0.4204 -3.8906 1.2337 13 6 0.5550 -5.0717 1.2520 14 7 1.4986 -4.9229 0.1357 15 6 1.6798 -5.9241 -0.7484 16 8 2.4620 -5.7892 -1.6654 17 6 0.9105 -7.2111 -0.5973 18 1 1.0876 -7.6524 0.3834 19 6 1.2825 -8.2083 -1.7228 20 6 0.4524 -7.7375 -2.9349 21 1 0.9980 -7.3846 -3.8101 22 6 -0.9676 -8.2838 -3.0948 23 6 -0.7458 -6.9549 -2.3698 24 1 -1.0888 -6.0303 -2.8342 25 6 -0.6022 -6.9774 -0.8341 26 6 2.2454 -3.6644 0.0048 27 1 -0.4849 0.8400 -0.0004 28 1 -0.3216 -1.7386 1.2615 29 1 0.9991 -2.5467 2.1395 30 1 -1.0304 -3.9364 0.3315 31 1 -1.0651 -3.9376 2.1114 32 1 0.0017 -6.0043 1.1410 33 1 1.1025 -5.0816 2.1944 34 1 2.3481 -8.1522 -1.9451 35 1 1.0056 -9.2238 -1.4395 36 1 -1.4119 -8.2458 -4.0894 37 1 -1.2455 -9.1465 -2.4892 38 1 -1.1856 -7.7938 -0.4083 39 1 -0.9121 -6.0231 -0.4079 40 1 2.9306 -3.5571 0.8457 41 1 2.8075 -3.6686 -0.9291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397660117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -20.554985 kcal Electronic energy + Delta-G solvation = -20847.006493 eV Core-core repulsion = 17919.867534 eV Total energy + Delta-G solvation = -2927.138959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47345 -38.35342 -36.58404 -33.58106 -31.95297 -31.23232 -30.00419 -28.16204 -25.23060 -24.95034 -22.86542 -21.66486 -21.18253 -19.79448 -19.35101 -17.96599 -16.82403 -16.25840 -16.11893 -15.16756 -14.71662 -14.62436 -13.96597 -13.45813 -13.13581 -13.01801 -12.85771 -12.74126 -12.54271 -12.03816 -11.96405 -11.50420 -11.33292 -11.08809 -10.99725 -10.87853 -10.77856 -10.69503 -10.29198 -10.00426 -9.94237 -9.80292 -9.64849 -9.42868 -9.11972 -8.79476 -8.38726 -7.85196 -6.02202 -4.09091 3.10629 3.28480 3.36699 3.40837 3.55986 3.71828 4.42369 4.49358 4.68890 4.77837 5.01407 5.22853 5.27069 5.35195 5.40368 5.47277 5.49971 5.58706 5.65880 5.71641 5.74659 5.81036 5.89111 6.12451 6.15357 6.22238 6.30223 6.34148 6.37602 6.43863 6.49741 6.68188 6.83367 7.00972 7.18244 7.34422 7.69356 7.92970 8.06806 8.08436 8.38267 8.73311 8.95103 9.55881 11.03353 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.005138 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.724446 B = 5448.032175 C = 5540.680244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.104 3.896 14 N -0.603 5.603 15 C 0.520 3.480 16 O -0.548 6.548 17 C -0.115 4.115 18 H 0.096 0.904 19 C -0.075 4.075 20 C -0.155 4.155 21 H 0.110 0.890 22 C -0.155 4.155 23 C -0.168 4.168 24 H 0.109 0.891 25 C -0.090 4.090 26 C 0.117 3.883 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -15.304 1.116 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.335 5.335 15 C 0.307 3.693 16 O -0.426 6.426 17 C -0.136 4.136 18 H 0.114 0.886 19 C -0.113 4.113 20 C -0.173 4.173 21 H 0.128 0.872 22 C -0.192 4.192 23 C -0.187 4.187 24 H 0.127 0.873 25 C -0.127 4.127 26 C -0.004 4.004 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.919 -15.085 0.644 15.378 hybrid contribution 0.318 1.094 0.096 1.143 sum -2.601 -13.991 0.740 14.250 Atomic orbital electron populations 1.69882 1.05897 1.26338 1.50714 1.24934 0.94848 0.99075 0.94961 0.86531 0.80212 0.83698 0.77546 1.19725 1.21029 1.21044 1.21127 0.93027 0.90314 1.50669 0.92465 1.18964 0.92963 0.91194 0.94760 0.95326 1.21625 0.99446 0.95369 0.98571 1.22005 0.97646 0.96743 1.00893 1.21855 0.91503 0.99309 0.89260 1.48255 1.42021 1.15917 1.27291 1.20248 0.82505 0.84819 0.81734 1.90631 1.37855 1.81640 1.32479 1.22450 0.95933 0.94597 1.00654 0.88566 1.21781 1.00805 0.96702 0.92020 1.23158 0.89256 1.04480 1.00403 0.87210 1.23054 0.98368 0.96529 1.01264 1.23207 1.04723 0.96170 0.94557 0.87267 1.22094 0.93479 1.03014 0.94148 1.21968 0.95048 0.82039 1.01318 0.93053 0.88649 0.94623 0.92361 0.92505 0.90647 0.92147 0.90039 0.91217 0.88729 0.89220 0.90647 0.89739 0.92886 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.31 55.43 0.63 -24.37 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.95 8.57 -34.44 -0.29 -14.25 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.50 4.96 -26.69 -0.13 -2.64 16 12 C -0.13 -2.36 5.93 -26.62 -0.16 -2.52 16 13 C 0.10 1.60 5.47 -3.71 -0.02 1.58 16 14 N -0.60 -11.19 2.97 -172.77 -0.51 -11.71 16 15 C 0.52 9.43 6.76 -10.98 -0.07 9.36 16 16 O -0.55 -11.88 14.94 5.56 0.08 -11.80 16 17 C -0.11 -1.54 2.45 -89.78 -0.22 -1.76 16 18 H 0.10 1.07 7.82 -51.93 -0.41 0.67 16 19 C -0.08 -0.95 5.80 -25.07 -0.15 -1.10 16 20 C -0.15 -2.04 6.54 -89.51 -0.59 -2.62 16 21 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 22 C -0.16 -1.67 10.07 -26.74 -0.27 -1.94 16 23 C -0.17 -2.22 6.76 -89.51 -0.61 -2.83 16 24 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 25 C -0.09 -1.11 5.19 -25.08 -0.13 -1.24 16 26 C 0.12 2.57 5.66 -3.71 -0.02 2.55 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 29 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 1.07 7.60 -51.93 -0.39 0.68 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.93 4.60 -51.93 -0.24 0.70 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.14 7.47 -51.93 -0.39 0.76 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.13 5.41 -51.93 -0.28 0.85 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -29.84 313.34 -9.64 -39.48 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.58 Total: 2.52 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.96 Total: -14.99 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.11 Total: -36.08 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.84 -9.64 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397660117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.923 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds