Wall clock time and date at job start Mon Mar 30 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47286 * 2 1 4 4 C 1.52998 * 109.47371 * 239.99724 * 2 1 3 5 5 C 1.53004 * 109.46971 * 119.99898 * 2 1 3 6 6 H 1.09003 * 109.47126 * 179.97438 * 5 2 1 7 7 N 1.46901 * 109.46929 * 299.99694 * 5 2 1 8 8 C 1.52996 * 109.47315 * 59.99900 * 5 2 1 9 9 O 1.42895 * 109.47226 * 174.99876 * 8 5 2 10 10 C 1.35678 * 117.00071 * 179.97438 * 9 8 5 11 11 C 1.39311 * 119.81979 * 179.97438 * 10 9 8 12 12 C 1.36435 * 120.18622 * 180.27881 * 11 10 9 13 13 C 1.40837 * 119.81299 * 359.50279 * 12 11 10 14 14 C 1.41208 * 120.18128 * 180.22570 * 13 12 11 15 15 H 1.07997 * 120.00069 * 204.70988 * 14 13 12 16 16 C 1.39895 * 120.00008 * 24.71720 * 14 13 12 17 17 N 1.30879 * 120.00135 * 17.77697 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 197.78146 * 16 14 13 19 19 H 1.48505 * 109.47213 * 89.99768 * 18 16 14 20 20 H 1.48497 * 109.47124 * 209.99517 * 18 16 14 21 21 H 1.48495 * 109.47336 * 329.99763 * 18 16 14 22 22 C 1.40840 * 119.63647 * 0.50067 * 13 12 11 23 23 C 1.36432 * 119.81217 * 359.74883 * 22 13 12 24 24 H 1.09001 * 109.46966 * 300.00474 * 1 2 3 25 25 H 1.09004 * 109.46843 * 60.00104 * 1 2 3 26 26 H 1.08994 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46896 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46845 * 299.99651 * 3 2 1 29 29 H 1.08994 * 109.46870 * 59.99888 * 3 2 1 30 30 H 1.09008 * 109.47252 * 300.00080 * 4 2 1 31 31 H 1.08995 * 109.47195 * 60.00082 * 4 2 1 32 32 H 1.08998 * 109.47793 * 180.02562 * 4 2 1 33 33 H 1.00899 * 110.99977 * 60.00517 * 7 5 2 34 34 H 1.00902 * 110.99631 * 183.95166 * 7 5 2 35 35 H 1.09004 * 109.47231 * 55.00008 * 8 5 2 36 36 H 1.09003 * 109.47234 * 294.99949 * 8 5 2 37 37 H 1.08006 * 119.90822 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09138 * 179.72442 * 12 11 10 39 39 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09066 * 179.73102 * 22 13 12 41 41 H 1.07997 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7217 1.2491 7 7 1.5503 -0.0286 2.4487 8 6 1.5300 -2.1637 1.2494 9 8 2.0998 -2.8703 2.3530 10 6 1.7471 -4.1723 2.4990 11 6 2.2684 -4.9171 3.5546 12 6 1.9233 -6.2284 3.7052 13 6 1.0292 -6.8261 2.7958 14 6 0.6629 -8.1814 2.9471 15 1 0.3279 -8.7490 2.0916 16 6 0.7340 -8.7889 4.2053 17 7 0.7957 -8.0521 5.2852 18 14 0.7408 -10.6517 4.3439 19 1 2.1405 -11.1461 4.3013 20 1 0.1124 -11.0548 5.6275 21 1 -0.0248 -11.2351 3.2132 22 6 0.5068 -6.0661 1.7313 23 6 0.8661 -4.7573 1.5920 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2490 33 1 0.5417 -0.0152 2.4720 34 1 1.9258 -0.4472 3.2865 35 1 1.8183 -2.6511 0.3180 36 1 0.4436 -2.1650 1.3389 37 1 2.9509 -4.4562 4.2534 38 1 2.3318 -6.8056 4.5215 39 1 0.8453 -8.4732 6.1576 40 1 -0.1760 -6.5181 1.0272 41 1 0.4668 -4.1732 0.7761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403414668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:27 Heat of formation + Delta-G solvation = -40.431295 kcal Electronic energy + Delta-G solvation = -19780.326749 eV Core-core repulsion = 16852.325889 eV Total energy + Delta-G solvation = -2928.000861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.40845 -38.03840 -36.19355 -33.39562 -32.49898 -29.90493 -29.06546 -28.19298 -27.41596 -26.49790 -24.76430 -23.01641 -20.85336 -20.53391 -18.51351 -17.33492 -17.14361 -15.96523 -15.37806 -15.26543 -14.98405 -14.47330 -13.97778 -13.87469 -13.58063 -13.26821 -12.88446 -12.62062 -12.22690 -12.18723 -12.09233 -11.96941 -11.72827 -11.51014 -11.25251 -11.14723 -10.92200 -10.77258 -10.70484 -10.67081 -10.43178 -9.94298 -9.82290 -9.37440 -9.04474 -8.56983 -7.66597 -7.05058 -6.74122 -4.27576 2.76084 2.93110 3.07474 3.10795 3.19993 3.93124 3.96676 4.53338 4.60227 4.76910 4.89033 5.00807 5.30599 5.35397 5.46833 5.56171 5.61729 5.64760 5.71773 5.77076 5.85090 5.87873 5.94967 6.04299 6.06071 6.14311 6.20866 6.34484 6.39044 6.70244 6.96062 7.09327 7.16691 7.22674 7.44458 7.52902 7.55609 7.77969 7.98598 8.18405 8.43269 8.63399 8.88116 8.96791 10.20395 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.003684 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.736561 B = 7598.511071 C = 7870.935795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.149 4.149 5 C 0.105 3.895 6 H 0.085 0.915 7 N -0.838 5.838 8 C 0.030 3.970 9 O -0.330 6.330 10 C -0.008 4.008 11 C -0.120 4.120 12 C -0.134 4.134 13 C 0.088 3.912 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.799 5.799 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.199 4.199 23 C -0.166 4.166 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.336 0.664 34 H 0.349 0.651 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.280 0.720 40 H 0.094 0.906 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 11.833 -6.991 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.206 4.206 5 C -0.007 4.007 6 H 0.103 0.897 7 N -0.368 5.368 8 C -0.048 4.048 9 O -0.246 6.246 10 C -0.051 4.051 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.086 3.914 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.425 5.425 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.219 4.219 23 C -0.185 4.185 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.320 12.566 -6.895 14.394 hybrid contribution -0.725 -1.951 0.176 2.088 sum 0.594 10.615 -6.719 12.577 Atomic orbital electron populations 1.21981 0.94783 1.01913 1.01955 1.20476 0.95645 0.96067 0.93649 1.21719 1.00639 0.94650 1.01661 1.21996 1.01299 1.00536 0.96817 1.21443 1.00210 0.88329 0.90684 0.89655 1.59018 1.13772 1.59066 1.04902 1.23513 0.97473 0.93608 0.90200 1.85757 1.68530 1.22592 1.47698 1.18577 1.04099 0.82683 0.99779 1.19832 1.02501 0.94588 0.96991 1.20976 0.99263 0.93223 1.01838 1.17594 0.89854 0.93132 0.90798 1.19475 1.39795 0.95597 0.94540 0.90542 1.25880 0.92384 1.00586 0.95341 1.69831 1.36028 1.37625 0.99004 0.86317 0.79374 0.82586 0.78453 1.19306 1.20371 1.18706 1.20568 1.04916 0.93430 1.02941 1.20393 1.01863 0.96698 0.99554 0.92091 0.92583 0.92554 0.93047 0.93442 0.91325 0.92239 0.92461 0.92410 0.85126 0.83739 0.92706 0.93243 0.88543 0.85696 0.90911 0.88793 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.79 37.16 0.29 -1.22 16 2 C -0.06 -0.61 0.62 -154.51 -0.10 -0.71 16 3 C -0.13 -1.27 8.32 37.16 0.31 -0.96 16 4 C -0.15 -1.52 8.13 37.16 0.30 -1.22 16 5 C 0.11 1.35 2.39 -67.71 -0.16 1.19 16 6 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 7 N -0.84 -10.30 8.40 -4.67 -0.04 -10.34 16 8 C 0.03 0.47 3.60 37.16 0.13 0.60 16 9 O -0.33 -6.57 9.79 -18.74 -0.18 -6.76 16 10 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 11 C -0.12 -2.91 9.92 -39.83 -0.40 -3.31 16 12 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 13 C 0.09 2.37 5.57 -106.80 -0.60 1.78 16 14 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 15 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 16 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 17 N -0.80 -20.70 10.96 55.55 0.61 -20.09 16 18 Si 0.91 18.72 29.59 -169.99 -5.03 13.68 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16 23 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 24 H 0.06 0.60 6.67 -51.93 -0.35 0.25 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.71 7.60 -51.93 -0.39 0.32 16 30 H 0.06 0.65 6.32 -51.92 -0.33 0.33 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.34 3.89 7.16 -39.29 -0.28 3.61 16 34 H 0.35 4.62 8.75 -39.29 -0.34 4.28 16 35 H 0.05 0.86 5.68 -51.93 -0.29 0.57 16 36 H 0.05 0.78 6.21 -51.93 -0.32 0.46 16 37 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.13 3.34 6.17 -52.49 -0.32 3.02 16 39 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 40 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -27.31 323.18 -7.99 -35.31 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.24 Total: 11.83 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -1.98 Total: -28.50 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.57 Total: -30.44 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.18 Total: -6.76 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.31 -7.99 -35.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403414668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds