Wall clock time and date at job start Mon Mar 30 2020 07:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47286 * 2 1 4 4 C 1.52998 * 109.47371 * 239.99724 * 2 1 3 5 5 C 1.53004 * 109.46971 * 119.99898 * 2 1 3 6 6 H 1.09003 * 109.47126 * 179.97438 * 5 2 1 7 7 N 1.46901 * 109.46929 * 299.99694 * 5 2 1 8 8 C 1.52996 * 109.47315 * 59.99900 * 5 2 1 9 9 O 1.42895 * 109.47226 * 174.99876 * 8 5 2 10 10 C 1.35678 * 117.00071 * 179.97438 * 9 8 5 11 11 C 1.39311 * 119.81979 * 179.97438 * 10 9 8 12 12 C 1.36435 * 120.18622 * 180.27881 * 11 10 9 13 13 C 1.40837 * 119.81299 * 359.50279 * 12 11 10 14 14 C 1.41208 * 120.18128 * 180.22570 * 13 12 11 15 15 H 1.07997 * 120.00069 * 204.70988 * 14 13 12 16 16 C 1.39895 * 120.00008 * 24.71720 * 14 13 12 17 17 N 1.30879 * 120.00135 * 17.77697 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 197.78146 * 16 14 13 19 19 H 1.48505 * 109.47213 * 89.99768 * 18 16 14 20 20 H 1.48497 * 109.47124 * 209.99517 * 18 16 14 21 21 H 1.48495 * 109.47336 * 329.99763 * 18 16 14 22 22 C 1.40840 * 119.63647 * 0.50067 * 13 12 11 23 23 C 1.36432 * 119.81217 * 359.74883 * 22 13 12 24 24 H 1.09001 * 109.46966 * 300.00474 * 1 2 3 25 25 H 1.09004 * 109.46843 * 60.00104 * 1 2 3 26 26 H 1.08994 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46896 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46845 * 299.99651 * 3 2 1 29 29 H 1.08994 * 109.46870 * 59.99888 * 3 2 1 30 30 H 1.09008 * 109.47252 * 300.00080 * 4 2 1 31 31 H 1.08995 * 109.47195 * 60.00082 * 4 2 1 32 32 H 1.08998 * 109.47793 * 180.02562 * 4 2 1 33 33 H 1.00899 * 110.99977 * 60.00517 * 7 5 2 34 34 H 1.00902 * 110.99631 * 183.95166 * 7 5 2 35 35 H 1.09004 * 109.47231 * 55.00008 * 8 5 2 36 36 H 1.09003 * 109.47234 * 294.99949 * 8 5 2 37 37 H 1.08006 * 119.90822 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09138 * 179.72442 * 12 11 10 39 39 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09066 * 179.73102 * 22 13 12 41 41 H 1.07997 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7217 1.2491 7 7 1.5503 -0.0286 2.4487 8 6 1.5300 -2.1637 1.2494 9 8 2.0998 -2.8703 2.3530 10 6 1.7471 -4.1723 2.4990 11 6 2.2684 -4.9171 3.5546 12 6 1.9233 -6.2284 3.7052 13 6 1.0292 -6.8261 2.7958 14 6 0.6629 -8.1814 2.9471 15 1 0.3279 -8.7490 2.0916 16 6 0.7340 -8.7889 4.2053 17 7 0.7957 -8.0521 5.2852 18 14 0.7408 -10.6517 4.3439 19 1 2.1405 -11.1461 4.3013 20 1 0.1124 -11.0548 5.6275 21 1 -0.0248 -11.2351 3.2132 22 6 0.5068 -6.0661 1.7313 23 6 0.8661 -4.7573 1.5920 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2490 33 1 0.5417 -0.0152 2.4720 34 1 1.9258 -0.4472 3.2865 35 1 1.8183 -2.6511 0.3180 36 1 0.4436 -2.1650 1.3389 37 1 2.9509 -4.4562 4.2534 38 1 2.3318 -6.8056 4.5215 39 1 0.8453 -8.4732 6.1576 40 1 -0.1760 -6.5181 1.0272 41 1 0.4668 -4.1732 0.7761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403414668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:26 Heat of formation + Delta-G solvation = -55.678410 kcal Electronic energy + Delta-G solvation = -19780.987914 eV Core-core repulsion = 16852.325889 eV Total energy + Delta-G solvation = -2928.662025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83718 -39.41587 -37.84921 -35.23424 -33.54709 -31.75366 -30.93840 -29.35340 -28.21617 -27.50995 -26.57720 -24.29264 -22.68717 -22.27481 -19.56073 -19.19652 -18.69389 -17.12215 -17.06311 -16.63550 -16.44600 -15.76707 -15.50270 -15.00363 -14.91346 -14.55361 -14.26090 -14.08095 -13.87261 -13.82595 -13.23652 -12.98818 -12.92811 -12.82457 -12.72272 -12.54143 -12.47895 -12.30517 -11.75969 -11.64214 -11.59455 -11.50695 -11.43036 -11.19702 -10.89516 -9.63673 -9.58912 -8.95210 -8.61726 -6.25461 0.92387 0.99452 1.38973 1.51565 1.52095 2.21645 2.52163 2.70472 3.56057 3.67472 3.82608 3.93375 4.08251 4.15152 4.22316 4.27380 4.34550 4.44719 4.61974 4.74421 4.82296 4.86496 4.92274 4.95751 5.04363 5.08579 5.11631 5.18554 5.21082 5.26172 5.33642 5.49573 5.55003 5.59073 5.62581 5.86067 6.03007 6.19301 6.23723 6.52067 6.54662 6.77486 6.92692 7.06678 8.34953 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.003684 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.736561 B = 7598.511071 C = 7870.935795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.125 4.125 4 C -0.149 4.149 5 C 0.113 3.887 6 H 0.077 0.923 7 N -0.833 5.833 8 C 0.026 3.974 9 O -0.334 6.334 10 C 0.001 3.999 11 C -0.132 4.132 12 C -0.152 4.152 13 C 0.056 3.944 14 C -0.500 4.500 15 H 0.075 0.925 16 C 0.034 3.966 17 N -0.830 5.830 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.210 4.210 23 C -0.165 4.165 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.341 0.659 34 H 0.344 0.656 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 12.649 -7.986 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.207 4.207 5 C 0.000 4.000 6 H 0.095 0.905 7 N -0.362 5.362 8 C -0.051 4.051 9 O -0.250 6.250 10 C -0.043 4.043 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.054 3.946 14 C -0.530 4.530 15 H 0.094 0.906 16 C -0.180 4.180 17 N -0.457 5.457 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.230 4.230 23 C -0.184 4.184 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.051 13.414 -7.903 15.605 hybrid contribution -0.636 -2.017 0.432 2.159 sum 0.415 11.397 -7.471 13.634 Atomic orbital electron populations 1.21984 0.94208 1.01556 1.02846 1.20474 0.96062 0.96355 0.92527 1.21677 1.00550 0.93873 1.02133 1.22007 1.01382 1.00072 0.97233 1.21470 0.99757 0.86706 0.92057 0.90459 1.59024 1.14184 1.58530 1.04483 1.23843 0.97637 0.94779 0.88861 1.85766 1.68734 1.21057 1.49428 1.18654 1.02910 0.83907 0.98850 1.20010 1.02903 0.94260 0.97892 1.20909 1.00145 0.94122 1.01977 1.17943 0.90735 0.93969 0.91933 1.19725 1.41676 0.96174 0.95424 0.90643 1.26739 0.91330 1.05483 0.94451 1.69883 1.36373 1.39768 0.99679 0.85190 0.79549 0.76130 0.78745 1.18733 1.19309 1.18239 1.20794 1.05149 0.94280 1.02743 1.20655 1.01355 0.96213 1.00164 0.91882 0.91107 0.93486 0.93185 0.91911 0.91911 0.93215 0.90844 0.92368 0.84514 0.84335 0.92422 0.92962 0.87199 0.87161 0.90154 0.87835 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.79 71.98 0.56 -2.08 16 2 C -0.05 -1.02 0.62 -52.18 -0.03 -1.05 16 3 C -0.13 -2.14 8.32 71.98 0.60 -1.54 16 4 C -0.15 -2.70 8.13 71.98 0.59 -2.11 16 5 C 0.11 2.70 2.39 44.91 0.11 2.80 16 6 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 7 N -0.83 -19.17 8.40 -168.67 -1.42 -20.59 16 8 C 0.03 0.77 3.60 71.98 0.26 1.03 16 9 O -0.33 -12.91 9.79 -89.96 -0.88 -13.79 16 10 C 0.00 0.03 6.71 22.79 0.15 0.18 16 11 C -0.13 -6.45 9.92 22.11 0.22 -6.24 16 12 C -0.15 -8.19 8.64 22.48 0.19 -8.00 16 13 C 0.06 3.10 5.57 -21.28 -0.12 2.98 16 14 C -0.50 -27.29 9.04 23.40 0.21 -27.08 16 15 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 16 C 0.03 1.73 5.14 85.24 0.44 2.17 16 17 N -0.83 -43.90 10.96 21.82 0.24 -43.66 16 18 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 C -0.21 -10.46 9.74 22.48 0.22 -10.24 16 23 C -0.17 -7.39 8.96 22.11 0.20 -7.20 16 24 H 0.06 1.09 6.67 -2.39 -0.02 1.07 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 0.92 6.54 -2.39 -0.02 0.90 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.16 7.60 -2.39 -0.02 1.14 16 30 H 0.05 0.99 6.32 -2.38 -0.02 0.98 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.34 7.31 7.16 -89.69 -0.64 6.66 16 34 H 0.34 8.69 8.75 -89.69 -0.78 7.91 16 35 H 0.06 1.71 5.68 -2.38 -0.01 1.70 16 36 H 0.05 1.55 6.21 -2.39 -0.01 1.54 16 37 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 38 H 0.11 6.16 6.17 -2.91 -0.02 6.14 16 39 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 40 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 41 H 0.12 4.61 6.27 -2.91 -0.02 4.59 16 Total: -1.00 -58.65 323.18 3.17 -55.48 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -0.39 Total: 38.41 kcal Atomic # 6 Polarization: -59.95 SS G_CDS: 3.59 Total: -56.36 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -1.18 Total: -64.25 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.88 Total: -13.79 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -58.65 3.17 -55.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403414668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.197 kcal (2) G-P(sol) polarization free energy of solvation -58.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds