Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47308 * 2 1 4 4 C 1.38305 * 119.96201 * 270.02347 * 3 2 1 5 5 C 1.38258 * 120.15081 * 179.97438 * 4 3 2 6 6 C 1.38127 * 120.07507 * 359.74177 * 5 4 3 7 7 C 1.38889 * 119.92184 * 0.49075 * 6 5 4 8 8 N 1.39682 * 120.07549 * 179.79078 * 7 6 5 9 9 C 1.46504 * 119.99890 * 179.72332 * 8 7 6 10 10 C 1.46499 * 119.99728 * 359.71860 * 8 7 6 11 11 C 1.53000 * 109.46840 * 90.00448 * 10 8 7 12 12 O 1.42899 * 109.47405 * 64.99638 * 11 10 8 13 13 C 1.42901 * 113.99649 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46545 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00589 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99649 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48497 * 109.47124 * 210.00019 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99950 * 18 16 14 22 22 C 1.38079 * 119.96074 * 90.00003 * 3 2 1 23 23 H 1.09005 * 109.47119 * 300.00314 * 1 2 3 24 24 H 1.09000 * 109.47486 * 59.99806 * 1 2 3 25 25 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47573 * 240.00099 * 2 1 3 27 27 H 1.09005 * 109.47077 * 120.00036 * 2 1 3 28 28 H 1.08001 * 119.92409 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.96778 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.04302 * 180.27535 * 6 5 4 31 31 H 1.09000 * 109.46899 * 269.99483 * 9 8 7 32 32 H 1.08992 * 109.47334 * 29.99447 * 9 8 7 33 33 H 1.08994 * 109.46680 * 150.00071 * 9 8 7 34 34 H 1.09002 * 109.47391 * 330.00118 * 10 8 7 35 35 H 1.09001 * 109.46813 * 210.00174 * 10 8 7 36 36 H 1.09002 * 109.46642 * 184.99913 * 11 10 8 37 37 H 1.09002 * 109.47069 * 304.99442 * 11 10 8 38 38 H 1.08990 * 109.47463 * 299.99806 * 13 12 11 39 39 H 1.08992 * 109.47069 * 60.00902 * 13 12 11 40 40 H 0.97004 * 119.99079 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.04100 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.1982 5 6 2.7225 3.3759 -1.2028 6 6 2.9495 4.0340 -0.0098 7 6 2.7243 3.3812 1.1953 8 7 2.9570 4.0423 2.4036 9 6 2.7132 3.3541 3.6738 10 6 3.4448 5.4236 2.4007 11 6 2.2544 6.3848 2.3989 12 8 1.5262 6.2436 3.6202 13 6 0.3883 7.1021 3.7210 14 6 -0.3009 6.8696 5.0408 15 1 0.0910 6.1397 5.7336 16 6 -1.4321 7.5889 5.3640 17 7 -2.0332 7.3864 6.5161 18 14 -2.1105 8.8510 4.1655 19 1 -3.0873 8.1969 3.2582 20 1 -2.7860 9.9370 4.9201 21 1 -0.9974 9.4222 3.3655 22 6 2.2622 2.0710 1.1963 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0815 1.5614 -2.1325 29 1 2.9014 3.8816 -2.1401 30 1 3.3049 5.0539 -0.0139 31 1 1.6837 3.5257 3.9882 32 1 2.8805 2.2847 3.5456 33 1 3.3938 3.7401 4.4325 34 1 4.0503 5.5933 1.5103 35 1 4.0504 5.5969 3.2903 36 1 2.6150 7.4094 2.3072 37 1 1.6014 6.1528 1.5575 38 1 0.7103 8.1414 3.6569 39 1 -0.3036 6.8853 2.9072 40 1 -2.8292 7.8922 6.7432 41 1 2.0826 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459594124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -23.253562 kcal Electronic energy + Delta-G solvation = -19629.825241 eV Core-core repulsion = 16702.569263 eV Total energy + Delta-G solvation = -2927.255978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65811 -37.40573 -35.95039 -33.68802 -32.68066 -30.88827 -29.29018 -29.07216 -27.65754 -25.38992 -23.85327 -22.47282 -21.85682 -21.39830 -19.72938 -17.27581 -16.84258 -16.01267 -15.61422 -15.32097 -15.07035 -14.56627 -14.37085 -14.07743 -13.96093 -13.60793 -13.15487 -13.06554 -12.77435 -12.39610 -12.31877 -11.95725 -11.83452 -11.59765 -11.50782 -11.32483 -11.00634 -10.94627 -10.85564 -10.72335 -10.50717 -9.88673 -9.55652 -9.21472 -8.87645 -8.60120 -8.49254 -7.04132 -6.14314 -4.13286 1.56349 1.79056 3.23218 3.30078 3.31509 3.34110 4.00568 4.33469 4.57701 4.78706 4.91186 5.09569 5.17463 5.23153 5.31291 5.34234 5.42484 5.48441 5.55037 5.60759 5.64622 5.75502 5.78015 5.83265 5.85309 5.91912 6.06600 6.09847 6.16184 6.22163 6.29363 6.47845 6.58560 6.66119 6.82692 6.97669 7.04667 7.48320 7.57174 7.73236 7.98969 8.63526 8.95962 9.45256 10.98659 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004422 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.530522 B = 6330.556753 C = 6685.795884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.037 4.037 4 C -0.188 4.188 5 C -0.070 4.070 6 C -0.209 4.209 7 C 0.229 3.771 8 N -0.618 5.618 9 C 0.099 3.901 10 C 0.128 3.872 11 C 0.037 3.963 12 O -0.375 6.375 13 C 0.170 3.830 14 C -0.518 4.518 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.198 4.198 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.001 0.999 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.573 -10.555 -14.411 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.037 4.037 4 C -0.208 4.208 5 C -0.089 4.089 6 C -0.232 4.232 7 C 0.125 3.875 8 N -0.327 5.327 9 C -0.044 4.044 10 C 0.004 3.996 11 C -0.042 4.042 12 O -0.295 6.295 13 C 0.095 3.905 14 C -0.556 4.556 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.220 4.220 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.500 -10.523 -13.927 20.370 hybrid contribution -0.668 1.098 -0.733 1.480 sum 9.832 -9.425 -14.660 20.010 Atomic orbital electron populations 1.21737 0.94699 1.01417 1.02543 1.20531 0.96237 0.92961 1.02376 1.19581 0.96076 0.95388 0.92684 1.20655 1.07412 0.95784 0.96967 1.20787 0.96783 0.94350 0.96974 1.20643 1.10533 1.00745 0.91254 1.17865 0.92455 0.91223 0.85915 1.46418 1.70544 1.12511 1.03205 1.21633 1.02424 0.95896 0.84410 1.21519 0.94965 0.80463 1.02630 1.22871 0.94271 0.97454 0.89594 1.87897 1.42522 1.63832 1.35202 1.20576 0.83515 0.88805 0.97630 1.20865 1.10123 1.23575 1.01034 0.90038 1.24760 0.96107 0.96734 0.95293 1.69877 1.20127 1.41633 1.21721 0.86857 0.79711 0.81725 0.81506 1.19926 1.20729 1.19156 1.20531 1.09131 0.94301 0.98064 0.92280 0.92578 0.92650 0.91321 0.91291 0.87036 0.86644 0.86376 0.91972 0.92332 0.91624 0.89940 0.90039 0.93770 0.94092 0.98091 0.98595 0.92354 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.15 0.37 -1.08 16 2 C -0.08 -0.84 6.06 -27.88 -0.17 -1.01 16 3 C -0.04 -0.46 5.13 -104.65 -0.54 -1.00 16 4 C -0.19 -2.28 9.70 -39.55 -0.38 -2.66 16 5 C -0.07 -0.86 10.04 -39.61 -0.40 -1.26 16 6 C -0.21 -2.84 9.21 -39.38 -0.36 -3.21 16 7 C 0.23 3.39 6.55 -83.78 -0.55 2.84 16 8 N -0.62 -9.34 2.97 -179.62 -0.53 -9.87 16 9 C 0.10 1.45 9.83 59.85 0.59 2.04 16 10 C 0.13 1.81 5.60 -4.04 -0.02 1.79 16 11 C 0.04 0.65 6.28 37.16 0.23 0.88 16 12 O -0.38 -8.61 9.88 -35.23 -0.35 -8.96 16 13 C 0.17 4.36 4.76 36.01 0.17 4.53 16 14 C -0.52 -15.42 9.99 -34.44 -0.34 -15.76 16 15 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 16 C 0.07 2.15 5.47 -17.81 -0.10 2.05 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.20 -2.76 8.86 -39.38 -0.35 -3.11 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.46 6.15 -52.49 -0.32 1.13 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.72 6.20 -51.93 -0.32 0.40 16 33 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 35 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 39 H 0.00 -0.09 7.57 -51.93 -0.39 -0.49 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.12 1.59 6.14 -52.48 -0.32 1.27 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -32.19 335.16 -8.26 -40.46 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.69 Total: -1.80 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.85 Total: -14.94 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.24 Total: -36.75 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.35 Total: -8.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.19 -8.26 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459594124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds