Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47308 * 2 1 4 4 C 1.38305 * 119.96201 * 270.02347 * 3 2 1 5 5 C 1.38258 * 120.15081 * 179.97438 * 4 3 2 6 6 C 1.38127 * 120.07507 * 359.74177 * 5 4 3 7 7 C 1.38889 * 119.92184 * 0.49075 * 6 5 4 8 8 N 1.39682 * 120.07549 * 179.79078 * 7 6 5 9 9 C 1.46504 * 119.99890 * 179.72332 * 8 7 6 10 10 C 1.46499 * 119.99728 * 359.71860 * 8 7 6 11 11 C 1.53000 * 109.46840 * 90.00448 * 10 8 7 12 12 O 1.42899 * 109.47405 * 64.99638 * 11 10 8 13 13 C 1.42901 * 113.99649 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46545 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00589 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99649 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48497 * 109.47124 * 210.00019 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99950 * 18 16 14 22 22 C 1.38079 * 119.96074 * 90.00003 * 3 2 1 23 23 H 1.09005 * 109.47119 * 300.00314 * 1 2 3 24 24 H 1.09000 * 109.47486 * 59.99806 * 1 2 3 25 25 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47573 * 240.00099 * 2 1 3 27 27 H 1.09005 * 109.47077 * 120.00036 * 2 1 3 28 28 H 1.08001 * 119.92409 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.96778 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.04302 * 180.27535 * 6 5 4 31 31 H 1.09000 * 109.46899 * 269.99483 * 9 8 7 32 32 H 1.08992 * 109.47334 * 29.99447 * 9 8 7 33 33 H 1.08994 * 109.46680 * 150.00071 * 9 8 7 34 34 H 1.09002 * 109.47391 * 330.00118 * 10 8 7 35 35 H 1.09001 * 109.46813 * 210.00174 * 10 8 7 36 36 H 1.09002 * 109.46642 * 184.99913 * 11 10 8 37 37 H 1.09002 * 109.47069 * 304.99442 * 11 10 8 38 38 H 1.08990 * 109.47463 * 299.99806 * 13 12 11 39 39 H 1.08992 * 109.47069 * 60.00902 * 13 12 11 40 40 H 0.97004 * 119.99079 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.04100 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.1982 5 6 2.7225 3.3759 -1.2028 6 6 2.9495 4.0340 -0.0098 7 6 2.7243 3.3812 1.1953 8 7 2.9570 4.0423 2.4036 9 6 2.7132 3.3541 3.6738 10 6 3.4448 5.4236 2.4007 11 6 2.2544 6.3848 2.3989 12 8 1.5262 6.2436 3.6202 13 6 0.3883 7.1021 3.7210 14 6 -0.3009 6.8696 5.0408 15 1 0.0910 6.1397 5.7336 16 6 -1.4321 7.5889 5.3640 17 7 -2.0332 7.3864 6.5161 18 14 -2.1105 8.8510 4.1655 19 1 -3.0873 8.1969 3.2582 20 1 -2.7860 9.9370 4.9201 21 1 -0.9974 9.4222 3.3655 22 6 2.2622 2.0710 1.1963 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0815 1.5614 -2.1325 29 1 2.9014 3.8816 -2.1401 30 1 3.3049 5.0539 -0.0139 31 1 1.6837 3.5257 3.9882 32 1 2.8805 2.2847 3.5456 33 1 3.3938 3.7401 4.4325 34 1 4.0503 5.5933 1.5103 35 1 4.0504 5.5969 3.2903 36 1 2.6150 7.4094 2.3072 37 1 1.6014 6.1528 1.5575 38 1 0.7103 8.1414 3.6569 39 1 -0.3036 6.8853 2.9072 40 1 -2.8292 7.8922 6.7432 41 1 2.0826 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459594124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -41.927727 kcal Electronic energy + Delta-G solvation = -19630.635014 eV Core-core repulsion = 16702.569263 eV Total energy + Delta-G solvation = -2928.065751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68381 -38.88297 -37.26095 -34.91410 -34.55701 -32.16209 -30.43558 -30.28117 -29.41557 -26.59590 -24.77196 -24.02030 -23.61492 -22.37078 -20.77646 -19.09911 -18.31214 -17.25326 -17.23574 -16.52961 -16.48038 -16.08966 -15.65295 -15.30828 -15.11757 -14.73226 -14.53783 -14.21544 -14.14622 -13.89025 -13.60859 -13.25653 -13.02171 -12.90142 -12.74507 -12.54314 -12.48559 -12.36430 -12.18739 -11.86007 -11.75366 -11.48436 -11.37508 -10.96550 -10.64416 -10.37658 -9.57550 -8.40947 -8.14159 -6.48545 0.58057 0.78367 1.29627 1.32094 1.42924 2.24240 2.25578 2.91732 2.98421 3.08873 3.87938 4.01945 4.07220 4.18924 4.26053 4.33698 4.41334 4.46923 4.51578 4.53771 4.55484 4.60217 4.64372 4.74041 4.77601 4.87914 4.89595 4.95908 5.01516 5.08568 5.18042 5.22903 5.38736 5.39988 5.47211 5.69544 5.86482 5.89686 6.09469 6.37856 6.54817 6.63920 6.73743 7.15948 8.76089 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004422 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.530522 B = 6330.556753 C = 6685.795884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.044 4.044 4 C -0.191 4.191 5 C -0.073 4.073 6 C -0.220 4.220 7 C 0.205 3.795 8 N -0.628 5.628 9 C 0.105 3.895 10 C 0.131 3.869 11 C 0.030 3.970 12 O -0.397 6.397 13 C 0.182 3.818 14 C -0.543 4.543 15 H 0.031 0.969 16 C 0.015 3.985 17 N -0.940 5.940 18 Si 0.952 3.048 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.246 1.246 22 C -0.216 4.216 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.013 0.987 39 H -0.001 1.001 40 H 0.273 0.727 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 -9.990 -17.455 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.044 4.044 4 C -0.211 4.211 5 C -0.091 4.091 6 C -0.242 4.242 7 C 0.103 3.897 8 N -0.338 5.338 9 C -0.038 4.038 10 C 0.008 3.992 11 C -0.048 4.048 12 O -0.317 6.317 13 C 0.106 3.894 14 C -0.581 4.581 15 H 0.050 0.950 16 C -0.183 4.183 17 N -0.580 5.580 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.170 1.170 22 C -0.239 4.239 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.017 0.983 40 H 0.082 0.918 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.077 -9.979 -16.991 22.605 hybrid contribution -0.803 0.796 0.213 1.151 sum 10.274 -9.183 -16.778 21.711 Atomic orbital electron populations 1.21721 0.94684 1.02310 1.01496 1.20579 0.96125 0.91697 1.03526 1.19915 0.95532 0.96575 0.92408 1.21016 1.06426 0.95946 0.97670 1.21151 0.95857 0.94521 0.97615 1.20877 1.10696 1.01388 0.91234 1.18145 0.93525 0.91785 0.86229 1.46492 1.71146 1.12882 1.03269 1.21515 1.00097 0.97317 0.84920 1.21601 0.93750 0.79378 1.04447 1.23220 0.94722 0.99774 0.87074 1.87869 1.42045 1.63512 1.38245 1.20259 0.84378 0.89651 0.95114 1.21127 1.11378 1.23147 1.02448 0.95012 1.25799 0.96038 0.99052 0.97400 1.70028 1.20848 1.43066 1.24022 0.85651 0.79500 0.78555 0.78910 1.18809 1.19493 1.16984 1.20701 1.09908 0.94546 0.98737 0.94252 0.92650 0.90828 0.89390 0.90930 0.84771 0.84019 0.85275 0.95906 0.90432 0.91070 0.86678 0.89535 0.91689 0.94543 0.96977 0.98291 0.91764 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.89 71.98 0.71 -1.97 16 2 C -0.08 -1.50 6.06 29.85 0.18 -1.32 16 3 C -0.04 -1.04 5.13 -19.88 -0.10 -1.14 16 4 C -0.19 -4.16 9.70 22.29 0.22 -3.94 16 5 C -0.07 -1.60 10.04 22.25 0.22 -1.38 16 6 C -0.22 -5.56 9.21 22.40 0.21 -5.36 16 7 C 0.21 5.96 6.55 38.21 0.25 6.21 16 8 N -0.63 -18.89 2.97 -722.19 -2.15 -21.04 16 9 C 0.10 3.19 9.83 127.77 1.26 4.45 16 10 C 0.13 3.56 5.60 86.38 0.48 4.04 16 11 C 0.03 1.02 6.28 71.98 0.45 1.48 16 12 O -0.40 -18.45 9.88 -148.98 -1.47 -19.93 16 13 C 0.18 9.32 4.76 71.24 0.34 9.66 16 14 C -0.54 -33.45 9.99 25.60 0.26 -33.20 16 15 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 16 C 0.02 0.92 5.47 84.66 0.46 1.38 16 17 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 18 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 22 C -0.22 -6.01 8.86 22.40 0.20 -5.81 16 23 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.07 1.27 8.08 -2.38 -0.02 1.25 16 28 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.13 2.86 6.15 -2.91 -0.02 2.84 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.99 6.20 -2.39 -0.01 1.98 16 33 H 0.07 2.02 7.89 -2.39 -0.02 2.00 16 34 H 0.12 2.36 6.21 -2.39 -0.01 2.35 16 35 H 0.09 2.25 7.89 -2.39 -0.02 2.23 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.00 -0.03 7.57 -2.39 -0.02 -0.05 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.12 3.18 6.14 -2.91 -0.02 3.17 16 Total: -1.00 -71.60 335.16 4.63 -66.96 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.93 Total: 14.22 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 5.14 Total: -26.90 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.85 Total: -80.28 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.47 Total: -19.93 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -71.60 4.63 -66.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459594124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.037 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds