Wall clock time and date at job start Mon Mar 30 2020 07:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47119 * 119.99895 * 2 1 4 4 C 1.50693 * 120.00203 * 359.97438 * 3 2 1 5 5 C 1.32868 * 119.99895 * 179.97438 * 3 2 1 6 6 C 1.50703 * 120.00322 * 185.78660 * 5 3 2 7 7 C 1.50694 * 109.47389 * 125.67414 * 6 5 3 8 8 O 1.21277 * 120.00066 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99977 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99984 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.01609 * 326.38794 * 10 9 7 12 12 C 1.54266 * 110.03227 * 87.82900 * 10 9 7 13 13 C 1.54892 * 104.19551 * 95.67211 * 12 10 9 14 14 C 1.54894 * 102.74626 * 37.94689 * 13 12 10 15 15 H 1.08996 * 110.59953 * 80.78828 * 14 13 12 16 16 C 1.50696 * 110.48326 * 203.37765 * 14 13 12 17 17 H 1.08004 * 119.99995 * 114.77207 * 16 14 13 18 18 C 1.37881 * 120.00165 * 294.77370 * 16 14 13 19 19 N 1.31507 * 119.99734 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00000 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47128 * 119.99668 * 20 18 16 23 23 H 1.48499 * 109.47309 * 239.99919 * 20 18 16 24 24 C 1.53873 * 110.03484 * 204.99471 * 10 9 7 25 25 H 1.07998 * 120.00400 * 179.97438 * 1 2 3 26 26 H 1.08010 * 119.99903 * 359.72740 * 1 2 3 27 27 H 1.07993 * 120.00093 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47363 * 95.13738 * 4 3 2 29 29 H 1.09004 * 109.47183 * 215.14048 * 4 3 2 30 30 H 1.09003 * 109.47035 * 335.13451 * 4 3 2 31 31 H 1.08000 * 120.00055 * 5.77927 * 5 3 2 32 32 H 1.08994 * 109.47104 * 245.67863 * 6 5 3 33 33 H 1.09006 * 109.46379 * 5.67590 * 6 5 3 34 34 H 0.96997 * 120.00194 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.48809 * 214.35078 * 12 10 9 36 36 H 1.09000 * 110.48884 * 336.99410 * 12 10 9 37 37 H 1.08992 * 110.75723 * 279.62756 * 13 12 10 38 38 H 1.09000 * 110.91070 * 156.32902 * 13 12 10 39 39 H 0.97000 * 120.00078 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.02770 * 0.02562 * 24 10 9 41 41 H 1.08997 * 110.03407 * 121.37796 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3929 1.2741 0.0005 6 6 4.1465 2.5726 0.1321 7 6 5.1147 2.4771 1.2828 8 8 5.1857 1.4555 1.9325 9 7 5.9012 3.5274 1.5907 10 6 6.8422 3.4348 2.7098 11 1 6.4242 2.8083 3.4978 12 6 8.1846 2.8499 2.2244 13 6 9.0618 4.0951 1.9428 14 6 8.6650 5.0589 3.0886 15 1 9.1934 4.8014 4.0065 16 6 8.9509 6.4864 2.6996 17 1 8.1375 7.1869 2.5805 18 6 10.2509 6.8983 2.4958 19 7 11.2413 6.0455 2.6413 20 14 10.6053 8.6681 2.0144 21 1 9.3284 9.4201 1.9181 22 1 11.4729 9.2966 3.0428 23 1 11.2963 8.6947 0.7003 24 6 7.1477 4.8393 3.2592 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0045 27 1 1.8687 -0.9352 0.0004 28 1 1.2084 2.9401 1.0228 29 1 1.8572 3.3139 -0.5921 30 1 0.3218 2.4275 -0.4331 31 1 3.9330 0.3435 -0.0933 32 1 4.6950 2.7692 -0.7890 33 1 3.4423 3.3841 0.3161 34 1 5.8443 4.3447 1.0713 35 1 8.6356 2.2335 3.0021 36 1 8.0408 2.2704 1.3125 37 1 8.8184 4.5276 0.9724 38 1 10.1213 3.8451 1.9978 39 1 12.1559 6.3353 2.4983 40 1 6.5955 5.5897 2.6935 41 1 6.8779 4.8945 4.3138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590863258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:41 Heat of formation + Delta-G solvation = -27.409877 kcal Electronic energy + Delta-G solvation = -19305.140029 eV Core-core repulsion = 16377.703819 eV Total energy + Delta-G solvation = -2927.436210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67584 -37.46227 -36.65782 -33.54346 -32.63269 -31.84348 -29.04997 -28.16219 -27.36017 -26.23237 -23.83288 -21.67692 -20.19245 -19.43334 -19.05616 -17.98009 -17.01960 -16.56648 -16.04131 -15.46771 -14.94475 -14.56197 -14.29068 -13.99338 -13.79541 -13.31673 -13.00250 -12.76127 -12.52880 -12.30750 -11.77774 -11.70172 -11.58980 -11.05765 -11.03342 -10.96957 -10.84150 -10.65816 -10.54010 -10.42445 -9.96210 -9.60597 -9.51697 -9.22999 -8.82388 -8.57406 -8.37539 -8.32848 -6.03233 -4.06367 1.20738 2.85139 2.91209 3.27060 3.35689 3.38256 3.63139 4.41431 4.53869 4.71362 4.94865 5.07705 5.16825 5.27599 5.28756 5.32804 5.48167 5.53985 5.61515 5.66041 5.70025 5.82478 5.84283 6.21023 6.32378 6.33552 6.34855 6.54644 6.60762 6.63746 6.75192 6.80637 6.93069 6.93665 7.24951 7.33586 7.68552 7.84082 7.88346 8.00678 8.41145 8.53874 8.96559 9.57802 11.06278 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039097 B = 0.003360 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.999023 B = 8331.329872 C = 8718.374192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.512 3.488 8 O -0.547 6.547 9 N -0.715 5.715 10 C 0.139 3.861 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.100 4.100 14 C 0.047 3.953 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.122 4.122 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.400 0.600 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 -6.985 -6.486 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.179 4.179 5 C -0.127 4.127 6 C -0.161 4.161 7 C 0.298 3.702 8 O -0.425 6.425 9 N -0.366 5.366 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.138 4.138 14 C 0.029 3.971 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.161 4.161 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.429 -7.714 -6.005 19.117 hybrid contribution 0.372 1.293 -0.545 1.451 sum -16.057 -6.421 -6.549 18.492 Atomic orbital electron populations 1.24375 0.95704 1.01901 1.01187 1.21863 0.95281 0.96119 0.99549 1.20525 0.93902 0.94324 1.03095 1.20885 1.00113 0.94599 1.02282 1.22816 0.93820 0.97926 0.98180 1.20842 0.98433 0.98250 0.98527 1.20430 0.80980 0.83632 0.85136 1.90676 1.69188 1.29947 1.52652 1.46318 1.39584 1.16347 1.34345 1.21771 0.88760 0.98499 0.87453 0.90676 1.22833 0.95688 0.99036 0.99848 1.22454 0.98758 0.93050 0.99515 1.19468 0.88069 0.94756 0.94825 0.94913 1.21204 0.92120 0.94992 1.46860 0.92677 1.24990 0.96469 0.97136 0.95395 1.69967 0.99126 1.34161 1.49399 0.86598 0.78281 0.85347 0.78114 1.19841 1.21090 1.21111 1.22608 1.01214 0.93064 0.99168 0.88288 0.88103 0.86867 0.91422 0.91303 0.91595 0.86422 0.87911 0.88126 0.76592 0.92094 0.93208 0.93512 0.91493 0.93115 0.92039 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 14.11 28.88 0.41 -1.21 16 2 C -0.11 -1.08 9.83 -37.83 -0.37 -1.45 16 3 C -0.12 -1.24 5.98 -102.87 -0.62 -1.86 16 4 C -0.12 -1.04 8.53 36.00 0.31 -0.73 16 5 C -0.11 -1.26 8.45 -36.16 -0.31 -1.57 16 6 C -0.12 -1.32 5.77 -29.04 -0.17 -1.49 16 7 C 0.51 7.78 7.82 -10.99 -0.09 7.70 16 8 O -0.55 -10.42 15.69 5.56 0.09 -10.33 16 9 N -0.72 -10.91 5.03 -52.72 -0.27 -11.18 16 10 C 0.14 2.51 3.25 -66.81 -0.22 2.30 16 11 H 0.08 1.41 7.56 -51.93 -0.39 1.02 16 12 C -0.14 -2.63 6.54 -25.07 -0.16 -2.79 16 13 C -0.10 -2.25 5.75 -24.73 -0.14 -2.39 16 14 C 0.05 1.13 2.72 -90.11 -0.25 0.89 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.51 -13.53 8.46 -34.44 -0.29 -13.83 16 17 H 0.06 1.43 7.54 -52.48 -0.40 1.03 16 18 C 0.06 1.67 5.35 -17.82 -0.10 1.58 16 19 N -0.89 -25.10 12.29 55.43 0.68 -24.42 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.12 -2.39 6.13 -25.62 -0.16 -2.55 16 25 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 26 H 0.10 0.75 6.06 -52.48 -0.32 0.43 16 27 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 6.71 -51.93 -0.35 0.16 16 30 H 0.07 0.48 6.19 -51.93 -0.32 0.16 16 31 H 0.12 1.44 8.05 -52.49 -0.42 1.01 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.91 5.79 -51.93 -0.30 0.61 16 34 H 0.40 5.28 8.32 -40.82 -0.34 4.94 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 37 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.20 334.70 -8.15 -38.35 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.53 Total: 4.19 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.14 Total: -17.41 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.42 Total: -35.60 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.20 -8.15 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590863258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.944 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds