Wall clock time and date at job start Mon Mar 30 2020 07:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47119 * 119.99895 * 2 1 4 4 C 1.50693 * 120.00203 * 359.97438 * 3 2 1 5 5 C 1.32868 * 119.99895 * 179.97438 * 3 2 1 6 6 C 1.50703 * 120.00322 * 185.78660 * 5 3 2 7 7 C 1.50694 * 109.47389 * 125.67414 * 6 5 3 8 8 O 1.21277 * 120.00066 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99977 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99984 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.01609 * 326.38794 * 10 9 7 12 12 C 1.54266 * 110.03227 * 87.82900 * 10 9 7 13 13 C 1.54892 * 104.19551 * 95.67211 * 12 10 9 14 14 C 1.54894 * 102.74626 * 37.94689 * 13 12 10 15 15 H 1.08996 * 110.59953 * 80.78828 * 14 13 12 16 16 C 1.50696 * 110.48326 * 203.37765 * 14 13 12 17 17 H 1.08004 * 119.99995 * 114.77207 * 16 14 13 18 18 C 1.37881 * 120.00165 * 294.77370 * 16 14 13 19 19 N 1.31507 * 119.99734 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00000 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47128 * 119.99668 * 20 18 16 23 23 H 1.48499 * 109.47309 * 239.99919 * 20 18 16 24 24 C 1.53873 * 110.03484 * 204.99471 * 10 9 7 25 25 H 1.07998 * 120.00400 * 179.97438 * 1 2 3 26 26 H 1.08010 * 119.99903 * 359.72740 * 1 2 3 27 27 H 1.07993 * 120.00093 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47363 * 95.13738 * 4 3 2 29 29 H 1.09004 * 109.47183 * 215.14048 * 4 3 2 30 30 H 1.09003 * 109.47035 * 335.13451 * 4 3 2 31 31 H 1.08000 * 120.00055 * 5.77927 * 5 3 2 32 32 H 1.08994 * 109.47104 * 245.67863 * 6 5 3 33 33 H 1.09006 * 109.46379 * 5.67590 * 6 5 3 34 34 H 0.96997 * 120.00194 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.48809 * 214.35078 * 12 10 9 36 36 H 1.09000 * 110.48884 * 336.99410 * 12 10 9 37 37 H 1.08992 * 110.75723 * 279.62756 * 13 12 10 38 38 H 1.09000 * 110.91070 * 156.32902 * 13 12 10 39 39 H 0.97000 * 120.00078 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.02770 * 0.02562 * 24 10 9 41 41 H 1.08997 * 110.03407 * 121.37796 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3929 1.2741 0.0005 6 6 4.1465 2.5726 0.1321 7 6 5.1147 2.4771 1.2828 8 8 5.1857 1.4555 1.9325 9 7 5.9012 3.5274 1.5907 10 6 6.8422 3.4348 2.7098 11 1 6.4242 2.8083 3.4978 12 6 8.1846 2.8499 2.2244 13 6 9.0618 4.0951 1.9428 14 6 8.6650 5.0589 3.0886 15 1 9.1934 4.8014 4.0065 16 6 8.9509 6.4864 2.6996 17 1 8.1375 7.1869 2.5805 18 6 10.2509 6.8983 2.4958 19 7 11.2413 6.0455 2.6413 20 14 10.6053 8.6681 2.0144 21 1 9.3284 9.4201 1.9181 22 1 11.4729 9.2966 3.0428 23 1 11.2963 8.6947 0.7003 24 6 7.1477 4.8393 3.2592 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0045 27 1 1.8687 -0.9352 0.0004 28 1 1.2084 2.9401 1.0228 29 1 1.8572 3.3139 -0.5921 30 1 0.3218 2.4275 -0.4331 31 1 3.9330 0.3435 -0.0933 32 1 4.6950 2.7692 -0.7890 33 1 3.4423 3.3841 0.3161 34 1 5.8443 4.3447 1.0713 35 1 8.6356 2.2335 3.0021 36 1 8.0408 2.2704 1.3125 37 1 8.8184 4.5276 0.9724 38 1 10.1213 3.8451 1.9978 39 1 12.1559 6.3353 2.4983 40 1 6.5955 5.5897 2.6935 41 1 6.8779 4.8945 4.3138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590863258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:40 Heat of formation + Delta-G solvation = -44.296428 kcal Electronic energy + Delta-G solvation = -19305.872285 eV Core-core repulsion = 16377.703819 eV Total energy + Delta-G solvation = -2928.168465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95674 -38.84035 -37.66718 -35.19443 -33.86466 -33.19756 -30.13051 -29.77625 -28.65686 -27.28377 -25.70095 -22.72317 -21.42303 -20.92407 -20.65861 -18.76593 -18.48919 -18.10373 -16.95340 -16.90498 -16.59888 -16.11526 -15.49917 -15.18602 -14.88666 -14.54277 -14.13354 -14.04004 -13.75378 -13.53242 -13.27431 -12.95895 -12.78097 -12.56762 -12.43298 -12.34611 -12.27866 -12.14678 -11.72126 -11.65799 -11.45110 -11.37171 -11.07269 -10.82299 -10.76604 -10.44571 -9.93692 -9.09436 -8.09095 -6.18646 0.45191 1.42644 1.45292 1.55654 1.72263 2.07179 2.44394 2.49910 3.22371 3.76851 3.86854 3.99394 4.03125 4.09034 4.22881 4.36282 4.46626 4.47945 4.62817 4.70662 4.77493 4.82577 4.90950 4.95688 5.01241 5.02338 5.11496 5.15721 5.19862 5.27357 5.44447 5.50241 5.61649 5.67792 5.72909 5.81278 5.92122 6.00726 6.06652 6.39397 6.69229 6.93167 7.35885 7.49136 9.00124 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039097 B = 0.003360 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.999023 B = 8331.329872 C = 8718.374192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.110 4.110 4 C -0.125 4.125 5 C -0.140 4.140 6 C -0.107 4.107 7 C 0.511 3.489 8 O -0.589 6.589 9 N -0.709 5.709 10 C 0.150 3.850 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.089 4.089 14 C 0.038 3.962 15 H -0.002 1.002 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.283 1.283 24 C -0.110 4.110 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.412 0.588 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.034 0.966 39 H 0.258 0.742 40 H 0.074 0.926 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.185 -5.892 -7.609 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.110 4.110 4 C -0.181 4.181 5 C -0.158 4.158 6 C -0.146 4.146 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.361 5.361 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.164 4.164 13 C -0.127 4.127 14 C 0.020 3.980 15 H 0.016 0.984 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.562 5.562 20 Si 0.779 3.221 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.209 1.209 24 C -0.148 4.148 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.956 -6.601 -7.148 21.307 hybrid contribution 1.069 0.882 -0.172 1.396 sum -17.887 -5.719 -7.320 20.155 Atomic orbital electron populations 1.24647 0.95144 1.03234 0.98000 1.21986 0.96113 0.96039 1.02048 1.20828 0.93782 0.95525 1.00848 1.20972 1.00778 0.93683 1.02716 1.22747 0.94378 0.97651 1.01069 1.20809 0.97813 0.98723 0.97274 1.21193 0.80853 0.82538 0.85514 1.90660 1.70423 1.31534 1.54320 1.46194 1.38983 1.17217 1.33686 1.21425 0.88527 0.97200 0.88332 0.91065 1.22721 0.95912 0.97642 1.00131 1.22221 0.97390 0.94262 0.98818 1.19446 0.90876 0.94139 0.93568 0.98394 1.21589 0.92327 0.96179 1.46133 0.92140 1.25792 0.96490 1.01060 0.95625 1.70107 0.99384 1.36060 1.50642 0.85578 0.78341 0.80646 0.77505 1.18567 1.21237 1.20940 1.22420 0.97992 0.94248 1.00118 0.86815 0.86915 0.87310 0.91320 0.89915 0.90255 0.88227 0.85750 0.85687 0.75086 0.92385 0.92516 0.93879 0.94664 0.93274 0.90760 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 14.11 66.64 0.94 -1.50 16 2 C -0.14 -2.65 9.83 23.43 0.23 -2.41 16 3 C -0.11 -2.12 5.98 -18.71 -0.11 -2.24 16 4 C -0.13 -1.75 8.53 71.23 0.61 -1.14 16 5 C -0.14 -3.10 8.45 24.51 0.21 -2.89 16 6 C -0.11 -2.10 5.77 29.10 0.17 -1.93 16 7 C 0.51 14.76 7.82 87.65 0.69 15.45 16 8 O -0.59 -22.24 15.69 -3.02 -0.05 -22.29 16 9 N -0.71 -20.32 5.03 -439.10 -2.21 -22.53 16 10 C 0.15 5.29 3.25 45.71 0.15 5.44 16 11 H 0.07 2.62 7.56 -2.38 -0.02 2.60 16 12 C -0.13 -4.87 6.54 31.67 0.21 -4.66 16 13 C -0.09 -4.07 5.75 31.89 0.18 -3.89 16 14 C 0.04 1.86 2.72 -10.47 -0.03 1.83 16 15 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 16 C -0.52 -27.55 8.46 25.60 0.22 -27.33 16 17 H 0.06 3.05 7.54 -2.91 -0.02 3.03 16 18 C 0.01 0.47 5.35 84.66 0.45 0.93 16 19 N -0.92 -53.26 12.29 21.45 0.26 -52.99 16 20 Si 0.95 42.49 29.54 68.60 2.03 44.51 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.11 -4.18 6.13 31.32 0.19 -3.99 16 25 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 26 H 0.11 1.31 6.06 -2.91 -0.02 1.29 16 27 H 0.11 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.93 6.71 -2.39 -0.02 0.91 16 30 H 0.08 0.89 6.19 -2.39 -0.01 0.87 16 31 H 0.10 2.50 8.05 -2.91 -0.02 2.48 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.13 1.83 5.79 -2.38 -0.01 1.82 16 34 H 0.41 9.78 8.32 -92.71 -0.77 9.01 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.11 8.04 -2.39 -0.02 2.10 16 37 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 38 H 0.03 1.81 7.55 -2.39 -0.02 1.79 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.07 2.63 7.13 -2.39 -0.02 2.62 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -65.87 334.70 4.37 -61.50 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.24 Total: 20.14 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.10 Total: -28.35 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.95 Total: -75.52 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -65.87 4.37 -61.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590863258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds