Wall clock time and date at job start Mon Mar 30 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47119 * 119.99597 * 2 1 4 4 C 1.50703 * 120.00394 * 5.49820 * 3 2 1 5 5 C 1.32877 * 119.99683 * 185.50169 * 3 2 1 6 6 C 1.50694 * 120.00012 * 6.24333 * 5 3 2 7 7 C 1.50702 * 109.46862 * 126.12836 * 6 5 3 8 8 O 1.21285 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00246 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00368 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.01116 * 326.38976 * 10 9 7 12 12 C 1.53870 * 110.03356 * 87.83044 * 10 9 7 13 13 C 1.54263 * 106.59570 * 119.28866 * 12 10 9 14 14 C 1.54883 * 104.19896 * 23.60978 * 13 12 10 15 15 H 1.09005 * 110.91770 * 80.44803 * 14 13 12 16 16 C 1.50702 * 110.75879 * 203.74283 * 14 13 12 17 17 H 1.08000 * 120.00086 * 113.32504 * 16 14 13 18 18 C 1.37880 * 120.00187 * 293.60331 * 16 14 13 19 19 N 1.31512 * 119.99373 * 359.72564 * 18 16 14 20 20 Si 1.86794 * 120.00057 * 179.71964 * 18 16 14 21 21 H 1.48500 * 109.46790 * 90.00350 * 20 18 16 22 22 H 1.48500 * 109.47079 * 209.99950 * 20 18 16 23 23 H 1.48493 * 109.47532 * 330.00323 * 20 18 16 24 24 C 1.54269 * 110.03147 * 205.00385 * 10 9 7 25 25 H 1.08006 * 120.00086 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00615 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.00206 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46734 * 270.00162 * 4 3 2 29 29 H 1.08999 * 109.46707 * 30.00000 * 4 3 2 30 30 H 1.08992 * 109.47114 * 149.99749 * 4 3 2 31 31 H 1.07997 * 119.99863 * 186.25247 * 5 3 2 32 32 H 1.08998 * 109.47469 * 6.13273 * 6 5 3 33 33 H 1.08998 * 109.47320 * 246.12614 * 6 5 3 34 34 H 0.97006 * 120.00218 * 359.97438 * 9 7 6 35 35 H 1.08999 * 110.03416 * 238.56973 * 12 10 9 36 36 H 1.08998 * 110.03344 * 359.95651 * 12 10 9 37 37 H 1.08998 * 110.48690 * 264.92877 * 13 12 10 38 38 H 1.09006 * 110.48972 * 142.28817 * 13 12 10 39 39 H 0.97002 * 119.99581 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.48904 * 98.42479 * 24 10 9 41 41 H 1.09002 * 110.48454 * 335.77143 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0641 1.2741 0.0000 4 6 1.3158 2.5763 0.1250 5 6 3.3883 1.2768 -0.1103 6 6 4.1248 -0.0107 -0.3763 7 6 5.0034 0.1547 -1.5895 8 8 5.0293 1.2140 -2.1797 9 7 5.7604 -0.8744 -2.0187 10 6 6.6150 -0.7135 -3.1978 11 1 6.1414 -0.0406 -3.9127 12 6 7.9889 -0.1597 -2.7814 13 6 9.0342 -1.2143 -3.1996 14 6 8.3425 -2.0041 -4.3383 15 1 8.4089 -1.4639 -5.2827 16 6 8.9380 -3.3821 -4.4708 17 1 8.3428 -4.2524 -4.2369 18 6 10.2446 -3.5316 -4.8850 19 7 10.9693 -2.4718 -5.1697 20 14 10.9851 -5.2393 -5.0417 21 1 10.7521 -5.7558 -6.4144 22 1 12.4453 -5.1716 -4.7797 23 1 10.3469 -6.1480 -4.0559 24 6 6.8733 -2.0854 -3.8544 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8686 -0.9352 -0.0004 28 1 1.0501 2.9393 -0.8678 29 1 0.4091 2.4195 0.7093 30 1 1.9470 3.3115 0.6240 31 1 3.9367 2.2017 -0.0092 32 1 3.4060 -0.8104 -0.5547 33 1 4.7410 -0.2619 0.4870 34 1 5.7401 -1.7216 -1.5466 35 1 8.1829 0.7822 -3.2945 36 1 8.0196 -0.0099 -1.7022 37 1 9.2657 -1.8743 -2.3636 38 1 9.9392 -0.7300 -3.5664 39 1 11.8884 -2.5769 -5.4615 40 1 6.2012 -2.2366 -4.6992 41 1 6.7559 -2.8860 -3.1241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590863259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:43 Heat of formation + Delta-G solvation = -26.568929 kcal Electronic energy + Delta-G solvation = -19220.596225 eV Core-core repulsion = 16293.196482 eV Total energy + Delta-G solvation = -2927.399743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68377 -37.46574 -36.67499 -33.62635 -32.29928 -31.78375 -30.08628 -28.16421 -27.21986 -25.37403 -23.75530 -22.04985 -20.56093 -19.63564 -19.05952 -17.75595 -16.90490 -16.59910 -15.86456 -15.44839 -15.15921 -14.65697 -14.20508 -14.07759 -13.71393 -13.35838 -12.76476 -12.62903 -12.52110 -12.34765 -12.19572 -11.83622 -11.67731 -11.12962 -10.99946 -10.92307 -10.81225 -10.61899 -10.58748 -10.29138 -9.96849 -9.58158 -9.54761 -9.21258 -8.83179 -8.58776 -8.37770 -8.36570 -6.01992 -4.05190 1.18290 2.82610 2.87577 3.29429 3.36562 3.38641 3.59251 4.42820 4.50550 4.68975 4.85120 5.00410 5.21161 5.30084 5.31193 5.37070 5.46144 5.50858 5.58214 5.61868 5.67988 5.82510 5.85070 6.20499 6.25294 6.32018 6.35842 6.55145 6.59256 6.66456 6.74254 6.77698 6.90493 6.92728 7.25294 7.31117 7.68560 7.82554 7.86591 8.01232 8.41778 8.50977 8.97372 9.58936 11.07696 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.003239 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.030041 B = 8642.114637 C = 9046.964198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.512 3.488 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.137 3.863 11 H 0.079 0.921 12 C -0.134 4.134 13 C -0.103 4.103 14 C 0.052 3.948 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.121 4.121 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.260 0.740 40 H 0.053 0.947 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 4.707 11.592 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.140 4.140 3 C -0.118 4.118 4 C -0.170 4.170 5 C -0.129 4.129 6 C -0.161 4.161 7 C 0.297 3.703 8 O -0.422 6.422 9 N -0.370 5.370 10 C 0.034 3.966 11 H 0.097 0.903 12 C -0.172 4.172 13 C -0.141 4.141 14 C 0.033 3.967 15 H 0.053 0.947 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.159 4.159 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.083 5.530 11.093 20.305 hybrid contribution 0.573 -1.371 0.139 1.492 sum -15.510 4.159 11.232 19.597 Atomic orbital electron populations 1.24402 0.95745 1.01960 1.00327 1.21986 0.95367 0.96388 1.00277 1.20547 0.93867 0.94325 1.03015 1.20764 0.99910 0.94203 1.02102 1.22830 0.94002 0.97916 0.98130 1.20871 0.99249 0.98492 0.97508 1.20465 0.80119 0.84186 0.85491 1.90684 1.66583 1.27010 1.57902 1.46367 1.44450 1.14854 1.31330 1.21863 0.90060 0.98979 0.85742 0.90250 1.22629 0.95368 0.99644 0.99589 1.22336 0.97232 0.95491 0.99035 1.19554 0.87422 0.95700 0.94047 0.94659 1.21094 0.96963 0.91938 1.45256 0.92671 1.24986 0.97283 0.96477 0.95191 1.69961 1.08817 1.28389 1.45502 0.86639 0.78357 0.84859 0.78383 1.20730 1.21298 1.19973 1.22762 1.00928 0.93399 0.98839 0.88217 0.88164 0.86494 0.91336 0.91918 0.91677 0.86236 0.88182 0.88036 0.76871 0.92616 0.93236 0.93471 0.91582 0.93040 0.92867 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 14.07 28.88 0.41 -1.09 16 2 C -0.12 -1.13 9.20 -37.83 -0.35 -1.48 16 3 C -0.12 -1.21 5.98 -102.87 -0.61 -1.82 16 4 C -0.11 -0.97 9.39 36.01 0.34 -0.64 16 5 C -0.11 -1.25 8.43 -36.16 -0.30 -1.55 16 6 C -0.12 -1.30 5.92 -29.04 -0.17 -1.47 16 7 C 0.51 7.67 7.82 -10.99 -0.09 7.58 16 8 O -0.54 -10.39 15.69 5.55 0.09 -10.30 16 9 N -0.72 -10.66 4.98 -52.72 -0.26 -10.92 16 10 C 0.14 2.50 3.25 -66.81 -0.22 2.28 16 11 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 12 C -0.13 -2.61 6.59 -25.62 -0.17 -2.78 16 13 C -0.10 -2.35 5.75 -25.08 -0.14 -2.49 16 14 C 0.05 1.25 2.73 -89.78 -0.25 1.00 16 15 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.51 -13.74 8.49 -34.44 -0.29 -14.04 16 17 H 0.06 1.44 7.77 -52.49 -0.41 1.04 16 18 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 19 N -0.89 -25.34 12.40 55.43 0.69 -24.66 16 20 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.12 -2.38 5.94 -25.07 -0.15 -2.53 16 25 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 26 H 0.10 0.73 6.31 -52.49 -0.33 0.40 16 27 H 0.12 0.95 6.00 -52.49 -0.31 0.64 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.45 6.67 -51.93 -0.35 0.11 16 30 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 32 H 0.10 0.89 5.41 -51.93 -0.28 0.61 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 4.82 8.36 -40.82 -0.34 4.48 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 37 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.07 1.66 7.63 -51.93 -0.40 1.26 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -30.60 335.32 -8.10 -38.70 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.55 Total: 3.58 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.09 Total: -17.40 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.42 Total: -35.58 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.60 -8.10 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590863259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.127 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds