Wall clock time and date at job start Mon Mar 30 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47119 * 119.99597 * 2 1 4 4 C 1.50703 * 120.00394 * 5.49820 * 3 2 1 5 5 C 1.32877 * 119.99683 * 185.50169 * 3 2 1 6 6 C 1.50694 * 120.00012 * 6.24333 * 5 3 2 7 7 C 1.50702 * 109.46862 * 126.12836 * 6 5 3 8 8 O 1.21285 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00246 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00368 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.01116 * 326.38976 * 10 9 7 12 12 C 1.53870 * 110.03356 * 87.83044 * 10 9 7 13 13 C 1.54263 * 106.59570 * 119.28866 * 12 10 9 14 14 C 1.54883 * 104.19896 * 23.60978 * 13 12 10 15 15 H 1.09005 * 110.91770 * 80.44803 * 14 13 12 16 16 C 1.50702 * 110.75879 * 203.74283 * 14 13 12 17 17 H 1.08000 * 120.00086 * 113.32504 * 16 14 13 18 18 C 1.37880 * 120.00187 * 293.60331 * 16 14 13 19 19 N 1.31512 * 119.99373 * 359.72564 * 18 16 14 20 20 Si 1.86794 * 120.00057 * 179.71964 * 18 16 14 21 21 H 1.48500 * 109.46790 * 90.00350 * 20 18 16 22 22 H 1.48500 * 109.47079 * 209.99950 * 20 18 16 23 23 H 1.48493 * 109.47532 * 330.00323 * 20 18 16 24 24 C 1.54269 * 110.03147 * 205.00385 * 10 9 7 25 25 H 1.08006 * 120.00086 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00615 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.00206 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46734 * 270.00162 * 4 3 2 29 29 H 1.08999 * 109.46707 * 30.00000 * 4 3 2 30 30 H 1.08992 * 109.47114 * 149.99749 * 4 3 2 31 31 H 1.07997 * 119.99863 * 186.25247 * 5 3 2 32 32 H 1.08998 * 109.47469 * 6.13273 * 6 5 3 33 33 H 1.08998 * 109.47320 * 246.12614 * 6 5 3 34 34 H 0.97006 * 120.00218 * 359.97438 * 9 7 6 35 35 H 1.08999 * 110.03416 * 238.56973 * 12 10 9 36 36 H 1.08998 * 110.03344 * 359.95651 * 12 10 9 37 37 H 1.08998 * 110.48690 * 264.92877 * 13 12 10 38 38 H 1.09006 * 110.48972 * 142.28817 * 13 12 10 39 39 H 0.97002 * 119.99581 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.48904 * 98.42479 * 24 10 9 41 41 H 1.09002 * 110.48454 * 335.77143 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0641 1.2741 0.0000 4 6 1.3158 2.5763 0.1250 5 6 3.3883 1.2768 -0.1103 6 6 4.1248 -0.0107 -0.3763 7 6 5.0034 0.1547 -1.5895 8 8 5.0293 1.2140 -2.1797 9 7 5.7604 -0.8744 -2.0187 10 6 6.6150 -0.7135 -3.1978 11 1 6.1414 -0.0406 -3.9127 12 6 7.9889 -0.1597 -2.7814 13 6 9.0342 -1.2143 -3.1996 14 6 8.3425 -2.0041 -4.3383 15 1 8.4089 -1.4639 -5.2827 16 6 8.9380 -3.3821 -4.4708 17 1 8.3428 -4.2524 -4.2369 18 6 10.2446 -3.5316 -4.8850 19 7 10.9693 -2.4718 -5.1697 20 14 10.9851 -5.2393 -5.0417 21 1 10.7521 -5.7558 -6.4144 22 1 12.4453 -5.1716 -4.7797 23 1 10.3469 -6.1480 -4.0559 24 6 6.8733 -2.0854 -3.8544 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8686 -0.9352 -0.0004 28 1 1.0501 2.9393 -0.8678 29 1 0.4091 2.4195 0.7093 30 1 1.9470 3.3115 0.6240 31 1 3.9367 2.2017 -0.0092 32 1 3.4060 -0.8104 -0.5547 33 1 4.7410 -0.2619 0.4870 34 1 5.7401 -1.7216 -1.5466 35 1 8.1829 0.7822 -3.2945 36 1 8.0196 -0.0099 -1.7022 37 1 9.2657 -1.8743 -2.3636 38 1 9.9392 -0.7300 -3.5664 39 1 11.8884 -2.5769 -5.4615 40 1 6.2012 -2.2366 -4.6992 41 1 6.7559 -2.8860 -3.1241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590863259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:43 Heat of formation + Delta-G solvation = -43.924913 kcal Electronic energy + Delta-G solvation = -19221.348837 eV Core-core repulsion = 16293.196482 eV Total energy + Delta-G solvation = -2928.152355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94912 -38.83742 -37.68790 -35.26085 -33.86685 -32.80533 -30.88898 -29.95024 -28.75029 -26.48586 -25.50601 -22.79344 -21.84599 -21.20934 -20.76707 -18.58814 -18.39596 -18.02978 -16.99797 -16.67938 -16.55492 -16.28730 -15.59791 -15.29342 -14.75099 -14.45407 -14.22037 -13.97803 -13.67781 -13.45694 -13.24150 -13.00783 -12.99032 -12.79071 -12.54462 -12.45692 -12.37081 -12.09913 -11.66647 -11.50739 -11.41590 -11.30086 -11.09126 -10.83284 -10.78794 -10.45941 -9.96421 -9.10438 -8.10074 -6.20041 0.46261 1.43683 1.44507 1.54322 1.71185 2.07089 2.42857 2.48802 3.21388 3.76115 3.83346 3.99293 4.02729 4.06515 4.19334 4.26999 4.46887 4.60889 4.68833 4.70097 4.77269 4.81456 4.82676 4.92220 4.95940 5.03166 5.07025 5.16108 5.16460 5.29807 5.40157 5.52036 5.60361 5.65473 5.69266 5.84431 5.92313 5.98821 6.06474 6.37772 6.67698 6.91334 7.35530 7.47858 8.99244 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.003239 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.030041 B = 8642.114637 C = 9046.964198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.108 4.108 7 C 0.509 3.491 8 O -0.589 6.589 9 N -0.710 5.710 10 C 0.150 3.850 11 H 0.066 0.934 12 C -0.123 4.123 13 C -0.092 4.092 14 C 0.039 3.961 15 H -0.001 1.001 16 C -0.527 4.527 17 H 0.061 0.939 18 C 0.009 3.991 19 N -0.923 5.923 20 Si 0.955 3.045 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.263 1.263 24 C -0.107 4.107 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.276 3.169 13.197 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.111 4.111 4 C -0.174 4.174 5 C -0.159 4.159 6 C -0.147 4.147 7 C 0.298 3.702 8 O -0.470 6.470 9 N -0.362 5.362 10 C 0.044 3.956 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.131 4.131 14 C 0.021 3.979 15 H 0.017 0.983 16 C -0.565 4.565 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.562 5.562 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.187 1.187 24 C -0.145 4.145 25 H 0.134 0.866 26 H 0.124 0.876 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.094 3.963 12.726 22.473 hybrid contribution 1.097 -0.846 -0.374 1.435 sum -16.997 3.117 12.351 21.240 Atomic orbital electron populations 1.24664 0.95486 1.03086 0.97781 1.22120 0.95964 0.96254 1.02127 1.20836 0.93745 0.95488 1.01054 1.20835 1.00533 0.93747 1.02278 1.22795 0.94550 0.97811 1.00707 1.20842 0.99021 0.98914 0.95891 1.21262 0.79751 0.83125 0.86085 1.90670 1.67952 1.28816 1.59529 1.46173 1.43777 1.15912 1.30318 1.21438 0.89696 0.97602 0.86816 0.91625 1.22505 0.95160 0.98172 1.00361 1.22116 0.96778 0.95914 0.98262 1.19537 0.90805 0.94553 0.93043 0.98254 1.21493 0.97236 0.93092 1.44683 0.92122 1.25807 0.97938 1.00124 0.95088 1.70106 1.09004 1.30518 1.46597 0.85607 0.77326 0.80484 0.78548 1.20399 1.21371 1.18698 1.22561 0.97708 0.94696 0.99487 0.86590 0.87629 0.85396 0.91564 0.90357 0.91453 0.87732 0.85921 0.85543 0.74885 0.93431 0.91684 0.93842 0.94779 0.93212 0.92274 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.07 66.64 0.94 -1.30 16 2 C -0.15 -2.31 9.20 23.43 0.22 -2.09 16 3 C -0.11 -2.09 5.98 -18.71 -0.11 -2.20 16 4 C -0.12 -1.85 9.39 71.24 0.67 -1.18 16 5 C -0.14 -3.00 8.43 24.51 0.21 -2.79 16 6 C -0.11 -2.03 5.92 29.10 0.17 -1.86 16 7 C 0.51 14.48 7.82 87.66 0.69 15.16 16 8 O -0.59 -22.34 15.69 -3.04 -0.05 -22.39 16 9 N -0.71 -19.56 4.98 -439.09 -2.19 -21.75 16 10 C 0.15 5.33 3.25 45.71 0.15 5.48 16 11 H 0.07 2.56 7.56 -2.39 -0.02 2.54 16 12 C -0.12 -4.81 6.59 31.32 0.21 -4.60 16 13 C -0.09 -4.30 5.75 31.67 0.18 -4.12 16 14 C 0.04 1.95 2.73 -10.25 -0.03 1.92 16 15 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 16 C -0.53 -28.19 8.49 25.60 0.22 -27.97 16 17 H 0.06 3.11 7.77 -2.91 -0.02 3.08 16 18 C 0.01 0.49 5.36 84.66 0.45 0.94 16 19 N -0.92 -53.95 12.40 21.45 0.27 -53.69 16 20 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 C -0.11 -4.08 5.94 31.67 0.19 -3.89 16 25 H 0.12 1.12 8.06 -2.91 -0.02 1.09 16 26 H 0.11 1.22 6.31 -2.91 -0.02 1.20 16 27 H 0.13 1.65 6.00 -2.91 -0.02 1.64 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 0.96 6.67 -2.39 -0.02 0.95 16 30 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 31 H 0.10 2.49 8.04 -2.91 -0.02 2.47 16 32 H 0.12 1.77 5.41 -2.39 -0.01 1.76 16 33 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 8.72 8.36 -92.70 -0.77 7.95 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 37 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 38 H 0.03 1.77 7.63 -2.38 -0.02 1.75 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 Total: -1.00 -67.17 335.32 4.43 -62.74 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.23 Total: 18.61 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 4.14 Total: -28.50 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.92 Total: -75.43 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.17 4.43 -62.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590863259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.814 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds