Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99875 * 3 2 1 5 5 H 1.48506 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47444 * 119.99715 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.46845 * 110.99951 * 294.21172 * 12 11 10 14 14 C 1.53037 * 109.52225 * 174.15937 * 13 12 11 15 15 C 1.53120 * 109.27746 * 59.17801 * 14 13 12 16 16 C 1.50696 * 109.52244 * 182.43854 * 15 14 13 17 17 C 1.34513 * 125.79327 * 239.40037 * 16 15 14 18 18 C 1.41383 * 106.84500 * 179.88890 * 17 16 15 19 19 C 1.34521 * 106.83789 * 0.37412 * 18 17 16 20 20 O 1.34302 * 108.41821 * 359.76869 * 19 18 17 21 21 C 1.53114 * 109.16254 * 302.34805 * 15 14 13 22 22 C 1.46845 * 110.99877 * 169.99905 * 12 11 10 23 23 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 25 25 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 26 26 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 27 27 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 28 28 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 29 29 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 30 30 H 1.08998 * 109.46500 * 294.17496 * 13 12 11 31 31 H 1.08995 * 109.46400 * 54.14290 * 13 12 11 32 32 H 1.09001 * 109.50550 * 299.23861 * 14 13 12 33 33 H 1.09002 * 109.53767 * 179.14167 * 14 13 12 34 34 H 1.09005 * 109.52188 * 62.25161 * 15 14 13 35 35 H 1.08001 * 126.58076 * 0.02865 * 17 16 15 36 36 H 1.07998 * 126.58328 * 180.16713 * 18 17 16 37 37 H 1.07997 * 125.78888 * 179.75267 * 19 18 17 38 38 H 1.08996 * 109.50286 * 297.71173 * 21 15 14 39 39 H 1.08997 * 109.53662 * 177.61701 * 21 15 14 40 40 H 1.08995 * 109.46773 * 305.85989 * 22 12 11 41 41 H 1.09005 * 109.46091 * 65.83934 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 3.2034 -6.1384 -1.2503 14 6 4.2834 -7.2187 -1.1573 15 6 3.6205 -8.5758 -0.9058 16 6 4.6822 -9.6344 -0.7536 17 6 4.8168 -10.7299 -1.5225 18 6 5.9371 -11.4394 -1.0321 19 6 6.4151 -10.7394 0.0124 20 8 5.6511 -9.6471 0.1764 21 6 2.7875 -8.4984 0.3766 22 6 1.7510 -7.3809 0.2392 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6242 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8534 -5.0450 -0.8886 29 1 0.8540 -5.0446 0.8914 30 1 2.5348 -6.3638 -2.0811 31 1 3.6730 -5.1687 -1.4151 32 1 4.9605 -6.9865 -0.3353 33 1 4.8440 -7.2550 -2.0914 34 1 2.9729 -8.8263 -1.7461 35 1 4.1908 -11.0120 -2.3561 36 1 6.3312 -12.3673 -1.4195 37 1 7.2682 -11.0100 0.6167 38 1 3.4411 -8.2863 1.2228 39 1 2.2789 -9.4486 0.5389 40 1 1.1656 -7.3137 1.1562 41 1 1.0893 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595618999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -5.765105 kcal Electronic energy + Delta-G solvation = -19389.635703 eV Core-core repulsion = 16463.138081 eV Total energy + Delta-G solvation = -2926.497622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.72949 -38.98459 -35.12165 -33.33577 -32.97936 -31.27523 -30.76735 -29.02706 -26.43154 -24.24278 -23.15209 -22.20022 -21.90015 -20.65563 -19.80717 -19.56328 -17.55512 -16.35570 -16.09559 -15.63491 -15.00944 -14.71196 -14.43898 -14.28290 -13.97127 -13.63433 -13.34597 -12.98014 -12.91433 -12.55359 -12.24158 -12.11803 -11.72782 -11.39209 -11.18132 -11.02194 -10.85673 -10.72107 -10.58788 -10.40937 -10.32738 -10.06355 -9.54849 -9.28937 -9.02944 -8.57565 -8.30951 -8.02733 -5.96528 -3.98470 1.60182 2.45798 2.86927 3.35967 3.39892 3.42831 4.12334 4.39284 4.49742 4.66420 4.77561 4.84213 4.92557 5.16457 5.21574 5.38453 5.39222 5.48143 5.55980 5.61747 5.67330 5.67982 5.77950 5.86242 5.86827 5.95513 6.08130 6.09560 6.14155 6.31593 6.35362 6.36200 6.74854 6.81547 7.01741 7.16538 7.41177 7.43940 7.72023 7.87463 8.04173 8.47690 9.08647 9.65300 11.14945 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.003073 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.820185 B = 9108.985200 C = 9464.672295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.053 3.947 14 C -0.110 4.110 15 C -0.009 4.009 16 C 0.009 3.991 17 C -0.220 4.220 18 C -0.215 4.215 19 C -0.048 4.048 20 O -0.170 6.170 21 C -0.110 4.110 22 C 0.055 3.945 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.200 0.800 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -22.672 -2.066 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.075 4.075 14 C -0.148 4.148 15 C -0.027 4.027 16 C -0.042 4.042 17 C -0.240 4.240 18 C -0.234 4.234 19 C -0.116 4.116 20 O -0.066 6.066 21 C -0.147 4.147 22 C -0.073 4.073 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.217 0.783 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.802 -22.253 -1.460 23.975 hybrid contribution -0.071 0.476 -0.858 0.984 sum 8.731 -21.777 -2.318 23.577 Atomic orbital electron populations 1.69952 1.06059 1.26643 1.51023 1.25026 0.94841 0.99230 0.95410 0.86662 0.79577 0.83158 0.78626 1.20280 1.21334 1.20217 1.21227 0.93021 0.91078 1.50360 0.92732 1.19067 0.94039 0.91407 0.97047 1.21660 0.99143 0.92721 1.00771 1.22282 0.93625 0.90909 1.00212 1.61995 1.26912 1.02917 1.34568 1.22121 0.95336 0.99710 0.90315 1.21672 0.98210 0.92397 1.02522 1.19935 0.91738 0.91429 0.99643 1.22510 0.92288 0.98600 0.90800 1.21591 1.01584 0.96744 1.04039 1.21805 0.99259 1.02787 0.99546 1.24017 0.98661 0.87527 1.01400 1.84038 1.34805 1.40428 1.47282 1.21654 0.97800 0.98118 0.97171 1.22057 0.94994 0.89419 1.00826 0.93003 0.96875 0.96627 0.92587 0.93464 0.95367 0.91184 0.95103 0.89449 0.90456 0.91372 0.88706 0.83729 0.83699 0.78319 0.90474 0.91468 0.90469 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.21 5.08 -26.74 -0.14 -2.34 16 11 C 0.06 0.99 4.96 -3.82 -0.02 0.97 16 12 N -0.54 -8.11 4.66 -234.68 -1.09 -9.20 16 13 C 0.05 0.73 5.29 -3.83 -0.02 0.71 16 14 C -0.11 -1.30 5.36 -26.65 -0.14 -1.44 16 15 C -0.01 -0.10 2.66 -91.65 -0.24 -0.34 16 16 C 0.01 0.10 5.84 -35.63 -0.21 -0.11 16 17 C -0.22 -2.26 10.78 -39.70 -0.43 -2.68 16 18 C -0.21 -1.98 10.91 -39.70 -0.43 -2.42 16 19 C -0.05 -0.44 12.09 29.42 0.36 -0.09 16 20 O -0.17 -2.00 10.65 5.71 0.06 -1.94 16 21 C -0.11 -1.21 5.36 -26.65 -0.14 -1.35 16 22 C 0.06 0.69 5.46 -3.84 -0.02 0.67 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.30 6.21 -51.93 -0.32 0.98 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -31.29 331.16 -9.26 -40.55 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.94 Total: -3.04 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.99 Total: -21.71 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.36 Total: -35.77 kcal Atomic # 8 Polarization: -2.00 SS G_CDS: 0.06 Total: -1.94 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.29 -9.26 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.785 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds