Wall clock time and date at job start Mon Mar 30 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99875 * 3 2 1 5 5 H 1.48506 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47444 * 119.99715 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.46845 * 110.99951 * 294.21172 * 12 11 10 14 14 C 1.53037 * 109.52225 * 174.15937 * 13 12 11 15 15 C 1.53120 * 109.27746 * 59.17801 * 14 13 12 16 16 C 1.50696 * 109.52244 * 182.43854 * 15 14 13 17 17 C 1.34513 * 125.79327 * 239.40037 * 16 15 14 18 18 C 1.41383 * 106.84500 * 179.88890 * 17 16 15 19 19 C 1.34521 * 106.83789 * 0.37412 * 18 17 16 20 20 O 1.34302 * 108.41821 * 359.76869 * 19 18 17 21 21 C 1.53114 * 109.16254 * 302.34805 * 15 14 13 22 22 C 1.46845 * 110.99877 * 169.99905 * 12 11 10 23 23 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 25 25 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 26 26 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 27 27 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 28 28 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 29 29 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 30 30 H 1.08998 * 109.46500 * 294.17496 * 13 12 11 31 31 H 1.08995 * 109.46400 * 54.14290 * 13 12 11 32 32 H 1.09001 * 109.50550 * 299.23861 * 14 13 12 33 33 H 1.09002 * 109.53767 * 179.14167 * 14 13 12 34 34 H 1.09005 * 109.52188 * 62.25161 * 15 14 13 35 35 H 1.08001 * 126.58076 * 0.02865 * 17 16 15 36 36 H 1.07998 * 126.58328 * 180.16713 * 18 17 16 37 37 H 1.07997 * 125.78888 * 179.75267 * 19 18 17 38 38 H 1.08996 * 109.50286 * 297.71173 * 21 15 14 39 39 H 1.08997 * 109.53662 * 177.61701 * 21 15 14 40 40 H 1.08995 * 109.46773 * 305.85989 * 22 12 11 41 41 H 1.09005 * 109.46091 * 65.83934 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 3.2034 -6.1384 -1.2503 14 6 4.2834 -7.2187 -1.1573 15 6 3.6205 -8.5758 -0.9058 16 6 4.6822 -9.6344 -0.7536 17 6 4.8168 -10.7299 -1.5225 18 6 5.9371 -11.4394 -1.0321 19 6 6.4151 -10.7394 0.0124 20 8 5.6511 -9.6471 0.1764 21 6 2.7875 -8.4984 0.3766 22 6 1.7510 -7.3809 0.2392 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6242 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8534 -5.0450 -0.8886 29 1 0.8540 -5.0446 0.8914 30 1 2.5348 -6.3638 -2.0811 31 1 3.6730 -5.1687 -1.4151 32 1 4.9605 -6.9865 -0.3353 33 1 4.8440 -7.2550 -2.0914 34 1 2.9729 -8.8263 -1.7461 35 1 4.1908 -11.0120 -2.3561 36 1 6.3312 -12.3673 -1.4195 37 1 7.2682 -11.0100 0.6167 38 1 3.4411 -8.2863 1.2228 39 1 2.2789 -9.4486 0.5389 40 1 1.1656 -7.3137 1.1562 41 1 1.0893 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:39 Heat of formation + Delta-G solvation = -23.656172 kcal Electronic energy + Delta-G solvation = -19390.411518 eV Core-core repulsion = 16463.138081 eV Total energy + Delta-G solvation = -2927.273437 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.47347 -40.07428 -36.56508 -35.05362 -33.84037 -32.91875 -31.82570 -30.08794 -28.08653 -25.63546 -24.20655 -23.69303 -22.70043 -21.69920 -21.33347 -20.47891 -18.51274 -18.27610 -16.91181 -16.84847 -16.42330 -16.27917 -15.63380 -15.51034 -14.94422 -14.84717 -14.53395 -14.30396 -13.72411 -13.67497 -13.54404 -13.31326 -13.25874 -12.98102 -12.66142 -12.47459 -12.37387 -12.17617 -11.98427 -11.71568 -11.50054 -11.32965 -11.27459 -10.98720 -10.79138 -10.53785 -9.31433 -9.22547 -8.19640 -6.30628 0.86155 1.39958 1.43268 1.51183 1.75271 2.17946 2.41297 2.95906 3.13275 3.59277 3.78619 3.83693 4.15238 4.16078 4.23030 4.27535 4.34757 4.38326 4.47945 4.55002 4.66564 4.72000 4.75947 4.88217 4.90669 4.96387 5.01293 5.03754 5.07071 5.14529 5.16245 5.25787 5.30113 5.39692 5.52956 5.66927 5.75888 5.86764 6.12033 6.24657 6.28452 6.30250 6.86046 7.38427 8.92124 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.003073 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.820185 B = 9108.985200 C = 9464.672295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.090 4.090 11 C 0.069 3.931 12 N -0.549 5.549 13 C 0.053 3.947 14 C -0.102 4.102 15 C -0.004 4.004 16 C -0.014 4.014 17 C -0.224 4.224 18 C -0.226 4.226 19 C -0.051 4.051 20 O -0.193 6.193 21 C -0.102 4.102 22 C 0.055 3.945 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.008 1.008 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.231 0.769 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 -23.838 -2.500 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.274 5.274 13 C -0.075 4.075 14 C -0.139 4.139 15 C -0.022 4.022 16 C -0.063 4.063 17 C -0.243 4.243 18 C -0.245 4.245 19 C -0.118 4.118 20 O -0.089 6.089 21 C -0.139 4.139 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.247 0.753 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.053 -23.443 -1.897 25.578 hybrid contribution -0.444 0.772 -0.720 1.145 sum 9.609 -22.671 -2.617 24.762 Atomic orbital electron populations 1.70083 1.07778 1.27849 1.51682 1.25983 0.95789 1.03352 0.94710 0.85508 0.78302 0.78094 0.79201 1.19141 1.20703 1.19224 1.21674 0.93495 0.92480 1.50575 0.92380 1.18960 0.94382 0.93032 0.94727 1.21401 0.97963 0.92868 1.00519 1.21995 0.93475 0.90309 1.00126 1.61929 1.26566 1.03356 1.35506 1.22134 0.95736 0.99668 0.89983 1.21574 0.97350 0.92534 1.02489 1.19886 0.91813 0.90668 0.99855 1.22559 0.92879 0.99311 0.91597 1.21914 1.01893 0.96403 1.04042 1.22158 0.99062 1.03637 0.99616 1.24746 0.98867 0.86557 1.01650 1.84025 1.35419 1.41626 1.47861 1.21581 0.97238 0.98186 0.96925 1.22132 0.95485 0.88372 1.01311 0.92738 0.99088 0.99003 0.93255 0.93152 0.95504 0.91310 0.94303 0.91102 0.92046 0.90216 0.87235 0.82307 0.81557 0.75270 0.91973 0.89702 0.90277 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.84 5.08 30.59 0.16 -3.68 16 11 C 0.07 2.42 4.96 86.30 0.43 2.85 16 12 N -0.55 -16.24 4.66 -896.38 -4.17 -20.42 16 13 C 0.05 1.41 5.29 86.33 0.46 1.86 16 14 C -0.10 -2.31 5.36 30.65 0.16 -2.14 16 15 C 0.00 -0.08 2.66 -11.46 -0.03 -0.11 16 16 C -0.01 -0.28 5.84 24.83 0.14 -0.14 16 17 C -0.22 -4.11 10.78 22.19 0.24 -3.87 16 18 C -0.23 -3.65 10.91 22.19 0.24 -3.41 16 19 C -0.05 -0.84 12.09 66.97 0.81 -0.03 16 20 O -0.19 -4.31 10.65 -2.49 -0.03 -4.34 16 21 C -0.10 -2.09 5.36 30.64 0.16 -1.93 16 22 C 0.05 1.29 5.46 86.33 0.47 1.76 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.05 2.11 6.43 -2.39 -0.02 2.09 16 28 H 0.03 0.95 8.12 -2.38 -0.02 0.93 16 29 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 2.11 6.21 -2.39 -0.01 2.10 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.85 8.10 -2.38 -0.02 1.83 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.83 8.02 -2.39 -0.02 1.81 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -67.43 331.16 3.18 -64.25 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.98 Total: 9.33 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.09 Total: -38.42 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.89 Total: -77.84 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.03 Total: -4.34 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.43 3.18 -64.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.596 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds